David Liewald - Academia.edu (original) (raw)

Papers by David Liewald

Research paper thumbnail of Novel genetic loci underlying human intracranial volume identified through genome-wide association

Nature neuroscience, Dec 3, 2016

Intracranial volume reflects the maximally attained brain size during development, and remains st... more Intracranial volume reflects the maximally attained brain size during development, and remains stable with loss of tissue in late life. It is highly heritable, but the underlying genes remain largely undetermined. In a genome-wide association study of 32,438 adults, we discovered five previously unknown loci for intracranial volume and confirmed two known signals. Four of the loci were also associated with adult human stature, but these remained associated with intracranial volume after adjusting for height. We found a high genetic correlation with child head circumference (ρgenetic = 0.748), which indicates a similar genetic background and allowed us to identify four additional loci through meta-analysis (Ncombined = 37,345). Variants for intracranial volume were also related to childhood and adult cognitive function, and…

Research paper thumbnail of Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept

Nature Neuroscience, 2016

Research paper thumbnail of Systems genetics identifies a convergent gene network for cognition and neurodevelopmental disease

Nature neuroscience, Jan 21, 2015

Genetic determinants of cognition are poorly characterized, and their relationship to genes that ... more Genetic determinants of cognition are poorly characterized, and their relationship to genes that confer risk for neurodevelopmental disease is unclear. Here we performed a systems-level analysis of genome-wide gene expression data to infer gene-regulatory networks conserved across species and brain regions. Two of these networks, M1 and M3, showed replicable enrichment for common genetic variants underlying healthy human cognitive abilities, including memory. Using exome sequence data from 6,871 trios, we found that M3 genes were also enriched for mutations ascertained from patients with neurodevelopmental disease generally, and intellectual disability and epileptic encephalopathy in particular. M3 consists of 150 genes whose expression is tightly developmentally regulated, but which are collectively poorly annotated for known functional pathways. These results illustrate how systems-level analyses can reveal previously unappreciated relationships between neurodevelopmental disease-...

Research paper thumbnail of Genetic Associations with Subjective Well-Being Also Implicate Depression and Neuroticism

We conducted a genome-wide association study of subjective well-being (SWB) in 298,420 individual... more We conducted a genome-wide association study of subjective well-being (SWB) in 298,420 individuals. We also performed auxiliary analyses of depressive symptoms ("DS";N= 161,460) and neuroticism (N= 170,910), both of which have a substantial genetic correlation with SWB (ρ≈-0.8). We identify three SNPs associated with SWB at genome-wide significance. Two of them are significantly associated with DS in an independent sample. In our auxiliary analyses, we identify 13 additional genome-wide-significant associations: two with DS and eleven with neuroticism, including two inversion polymorphisms. Across our phenotypes, loci regulating expression in central nervous system and adrenal/pancreas tissues are enriched. The discovery of genetic loci associated with the three phenotypes we study has proven elusive; our findings illustrate the payoffs from studying them jointly.

Research paper thumbnail of Genome-wide analysis of over 106,000 individuals identifies 9 neuroticism-associated loci

Neuroticism is a personality trait of fundamental importance for psychological wellbeing and publ... more Neuroticism is a personality trait of fundamental importance for psychological wellbeing and public health. It is strongly associated with major depressive disorder (MDD) and several other psychiatric conditions. Although neuroticism is heritable, attempts to identify the alleles involved in previous studies have been limited by relatively small sample sizes and heterogeneity in the measurement of neuroticism. Here we report a genome-wide association study of neuroticism in 91,370 participants of the UK Biobank cohort and a combined meta-analysis which includes a further 6,659 participants from the Generation Scotland Scottish Family Health Study (GS:SFHS) and 8,687 participants from a QIMR Berghofer Medical Research Institute (QIMR) cohort. All participants were assessed using the same neuroticism instrument, the Eysenck Personality Questionnaire-Revised (EPQ-R-S) Short Form Neuroticism scale. We found a SNP-based heritability estimate for neuroticism of approximately 15% (SE = 0.7...

Research paper thumbnail of GWAS for executive function and processing speed suggests involvement of the CADM2 gene

Molecular psychiatry, Jan 14, 2015

To identify common variants contributing to normal variation in two specific domains of cognitive... more To identify common variants contributing to normal variation in two specific domains of cognitive functioning, we conducted a genome-wide association study (GWAS) of executive functioning and information processing speed in non-demented older adults from the CHARGE (Cohorts for Heart and Aging Research in Genomic Epidemiology) consortium. Neuropsychological testing was available for 5429-32 070 subjects of European ancestry aged 45 years or older, free of dementia and clinical stroke at the time of cognitive testing from 20 cohorts in the discovery phase. We analyzed performance on the Trail Making Test parts A and B, the Letter Digit Substitution Test (LDST), the Digit Symbol Substitution Task (DSST), semantic and phonemic fluency tests, and the Stroop Color and Word Test. Replication was sought in 1311-21860 subjects from 20 independent cohorts. A significant association was observed in the discovery cohorts for the single-nucleotide polymorphism (SNP) rs17518584 (discovery P-valu...

Research paper thumbnail of Common polygenic risk for autism spectrum disorder (ASD) is associated with cognitive ability in the general population

Molecular psychiatry, Jan 10, 2015

Cognitive impairment is common among individuals diagnosed with autism spectrum disorder (ASD) an... more Cognitive impairment is common among individuals diagnosed with autism spectrum disorder (ASD) and attention-deficit hyperactivity disorder (ADHD). It has been suggested that some aspects of intelligence are preserved or even superior in people with ASD compared with controls, but consistent evidence is lacking. Few studies have examined the genetic overlap between cognitive ability and ASD/ADHD. The aim of this study was to examine the polygenic overlap between ASD/ADHD and cognitive ability in individuals from the general population. Polygenic risk for ADHD and ASD was calculated from genome-wide association studies of ASD and ADHD conducted by the Psychiatric Genetics Consortium. Risk scores were created in three independent cohorts: Generation Scotland Scottish Family Health Study (GS:SFHS) (n=9863), the Lothian Birth Cohorts 1936 and 1921 (n=1522), and the Brisbane Adolescent Twin Sample (BATS) (n=921). We report that polygenic risk for ASD is positively correlated with general...

Research paper thumbnail of Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53 949)

Molecular psychiatry, 2015

General cognitive function is substantially heritable across the human life course from adolescen... more General cognitive function is substantially heritable across the human life course from adolescence to old age. We investigated the genetic contribution to variation in this important, health- and well-being-related trait in middle-aged and older adults. We conducted a meta-analysis of genome-wide association studies of 31 cohorts (N=53 949) in which the participants had undertaken multiple, diverse cognitive tests. A general cognitive function phenotype was tested for, and created in each cohort by principal component analysis. We report 13 genome-wide significant single-nucleotide polymorphism (SNP) associations in three genomic regions, 6q16.1, 14q12 and 19q13.32 (best SNP and closest gene, respectively: rs10457441, P=3.93 × 10(-9), MIR2113; rs17522122, P=2.55 × 10(-8), AKAP6; rs10119, P=5.67 × 10(-9), APOE/TOMM40). We report one gene-based significant association with the HMGN1 gene located on chromosome 21 (P=1 × 10(-6)). These genes have previously been associated with neurops...

Research paper thumbnail of Multi-Ethnic Genome-Wide Association Study of Cerebral White Matter Hyperintensities on MRI

Circulation. Cardiovascular genetics, Jan 7, 2015

Research paper thumbnail of Genetic diversity is a predictor of mortality in humans

Research paper thumbnail of Genetic Predictors of Fibrin D-Dimer Levels in Healthy Adults

Circulation, 2011

Background— Fibrin fragment D-dimer, one of several peptides produced when crosslinked fibrin is ... more Background— Fibrin fragment D-dimer, one of several peptides produced when crosslinked fibrin is degraded by plasmin, is the most widely used clinical marker of activated blood coagulation. To identity genetic loci influencing D-dimer levels, we performed the first large-scale, genome-wide association search. Methods and Results— A genome-wide investigation of the genomic correlates of plasma D-dimer levels was conducted among 21 052 European-ancestry adults. Plasma levels of D-dimer were measured independently in each of 13 cohorts. Each study analyzed the association between ≈2.6 million genotyped and imputed variants across the 22 autosomal chromosomes and natural-log–transformed D-dimer levels using linear regression in additive genetic models adjusted for age and sex. Among all variants, 74 exceeded the genome-wide significance threshold and marked 3 regions. At 1p22, rs12029080 ( P =6.4×10 −52 ) was 46.0 kb upstream from F3 , coagulation factor III (tissue factor). At 1q24, rs...

Research paper thumbnail of Multiethnic Meta-Analysis of Genome-Wide Association Studies in >100 000 Subjects Identifies 23 Fibrinogen-Associated Loci but No Strong Evidence of a Causal Association Between Circulating Fibrinogen and Cardiovascular Disease

Circulation, 2013

Background— Estimates of the heritability of plasma fibrinogen concentration, an established pred... more Background— Estimates of the heritability of plasma fibrinogen concentration, an established predictor of cardiovascular disease, range from 34% to 50%. Genetic variants so far identified by genome-wide association studies explain only a small proportion (<2%) of its variation. Methods and Results— We conducted a meta-analysis of 28 genome-wide association studies including >90 000 subjects of European ancestry, the first genome-wide association meta-analysis of fibrinogen levels in 7 studies in blacks totaling 8289 samples, and a genome-wide association study in Hispanics totaling 1366 samples. Evaluation for association of single-nucleotide polymorphisms with clinical outcomes included a total of 40 695 cases and 85 582 controls for coronary artery disease, 4752 cases and 24 030 controls for stroke, and 3208 cases and 46 167 controls for venous thromboembolism. Overall, we identified 24 genome-wide significant ( P <5×10 −8 ) independent signals in 23 loci, including 15 no...

Research paper thumbnail of Polygenic risk scores for smoking: predictors for alcohol and cannabis use?

Research paper thumbnail of GWAS of 126,559 Individuals Identifies Genetic Variants Associated with Educational Attainment

Science, 2013

Genetic College Many genomic elements in humans are associated with behavior, including education... more Genetic College Many genomic elements in humans are associated with behavior, including educational attainment. In a genome-wide association study including more than 100,000 samples, Rietveld et al. (p. 1467 , published online 30 May; see the Perspective by Flint and Munafò ) looked for genes related to educational attainment in Caucasians. Small genetic effects at three loci appeared to impact educational attainment.

Research paper thumbnail of Integration of DNA methylation datasets for individual prediction

BackgroundEpigenetic scores (EpiScores) can provide blood-based biomarkers of lifestyle and disea... more BackgroundEpigenetic scores (EpiScores) can provide blood-based biomarkers of lifestyle and disease risk. Projecting a new individual onto a reference panel would aid precision medicine and risk communication but is challenging due to the separation of technical and biological sources of variation with array data. Normalisation methods can standardize data distributions but may also remove population-level biological variation.MethodsWe compared two independent birth cohorts (Lothian Birth Cohorts of 1921 and 1936 – nLBC1921= 387 and nLBC1936= 498) with DNA methylation assessed at the same chronological age (79 years) and processed in the same lab but in different years and experimental batches. We examined the effect of 15 normalisation methods on a BMI EpiScore (trained in an external cohort of 18,413 individuals) when the cohorts were normalised separately and together.ResultsThe BMI EpiScore explained a maximum variance of R2=24.5% in BMI in LBC1936 after SWAN normalisation. Alt...

Research paper thumbnail of Genetic and epigenetic architectures of neurological protein biomarkers in the Lothian Birth Cohort 1936 - GWAS Proteins

bioRxiv, 2019

Data supporting the paper Hillary et al. "Genetic and epigenetic architectures of neurologic... more Data supporting the paper Hillary et al. "Genetic and epigenetic architectures of neurological protein biomarkers in the Lothian Birth Cohort 1936" (In submission). Specifically GWAS proteins.

Research paper thumbnail of Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits

Research paper thumbnail of Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits

Research paper thumbnail of Genetic contributions to Trail Making Test performance in UK Biobank

Molecular Psychiatry, 2017

Research paper thumbnail of Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting

Neurology, 2019

ObjectiveTo explore genetic and lifestyle risk factors of MRI-defined brain infarcts (BI) in larg... more ObjectiveTo explore genetic and lifestyle risk factors of MRI-defined brain infarcts (BI) in large population-based cohorts.MethodsWe performed meta-analyses of genome-wide association studies (GWAS) and examined associations of vascular risk factors and their genetic risk scores (GRS) with MRI-defined BI and a subset of BI, namely, small subcortical BI (SSBI), in 18 population-based cohorts (n = 20,949) from 5 ethnicities (3,726 with BI, 2,021 with SSBI). Top loci were followed up in 7 population-based cohorts (n = 6,862; 1,483 with BI, 630 with SBBI), and we tested associations with related phenotypes including ischemic stroke and pathologically defined BI.ResultsThe mean prevalence was 17.7% for BI and 10.5% for SSBI, steeply rising after age 65. Two loci showed genome-wide significant association with BI: FBN2, p = 1.77 × 10−8; and LINC00539/ZDHHC20, p = 5.82 × 10−9. Both have been associated with blood pressure (BP)–related phenotypes, but did not replicate in the smaller follo...

Research paper thumbnail of Novel genetic loci underlying human intracranial volume identified through genome-wide association

Nature neuroscience, Dec 3, 2016

Intracranial volume reflects the maximally attained brain size during development, and remains st... more Intracranial volume reflects the maximally attained brain size during development, and remains stable with loss of tissue in late life. It is highly heritable, but the underlying genes remain largely undetermined. In a genome-wide association study of 32,438 adults, we discovered five previously unknown loci for intracranial volume and confirmed two known signals. Four of the loci were also associated with adult human stature, but these remained associated with intracranial volume after adjusting for height. We found a high genetic correlation with child head circumference (ρgenetic = 0.748), which indicates a similar genetic background and allowed us to identify four additional loci through meta-analysis (Ncombined = 37,345). Variants for intracranial volume were also related to childhood and adult cognitive function, and…

Research paper thumbnail of Genetic influences on schizophrenia and subcortical brain volumes: large-scale proof of concept

Nature Neuroscience, 2016

Research paper thumbnail of Systems genetics identifies a convergent gene network for cognition and neurodevelopmental disease

Nature neuroscience, Jan 21, 2015

Genetic determinants of cognition are poorly characterized, and their relationship to genes that ... more Genetic determinants of cognition are poorly characterized, and their relationship to genes that confer risk for neurodevelopmental disease is unclear. Here we performed a systems-level analysis of genome-wide gene expression data to infer gene-regulatory networks conserved across species and brain regions. Two of these networks, M1 and M3, showed replicable enrichment for common genetic variants underlying healthy human cognitive abilities, including memory. Using exome sequence data from 6,871 trios, we found that M3 genes were also enriched for mutations ascertained from patients with neurodevelopmental disease generally, and intellectual disability and epileptic encephalopathy in particular. M3 consists of 150 genes whose expression is tightly developmentally regulated, but which are collectively poorly annotated for known functional pathways. These results illustrate how systems-level analyses can reveal previously unappreciated relationships between neurodevelopmental disease-...

Research paper thumbnail of Genetic Associations with Subjective Well-Being Also Implicate Depression and Neuroticism

We conducted a genome-wide association study of subjective well-being (SWB) in 298,420 individual... more We conducted a genome-wide association study of subjective well-being (SWB) in 298,420 individuals. We also performed auxiliary analyses of depressive symptoms ("DS";N= 161,460) and neuroticism (N= 170,910), both of which have a substantial genetic correlation with SWB (ρ≈-0.8). We identify three SNPs associated with SWB at genome-wide significance. Two of them are significantly associated with DS in an independent sample. In our auxiliary analyses, we identify 13 additional genome-wide-significant associations: two with DS and eleven with neuroticism, including two inversion polymorphisms. Across our phenotypes, loci regulating expression in central nervous system and adrenal/pancreas tissues are enriched. The discovery of genetic loci associated with the three phenotypes we study has proven elusive; our findings illustrate the payoffs from studying them jointly.

Research paper thumbnail of Genome-wide analysis of over 106,000 individuals identifies 9 neuroticism-associated loci

Neuroticism is a personality trait of fundamental importance for psychological wellbeing and publ... more Neuroticism is a personality trait of fundamental importance for psychological wellbeing and public health. It is strongly associated with major depressive disorder (MDD) and several other psychiatric conditions. Although neuroticism is heritable, attempts to identify the alleles involved in previous studies have been limited by relatively small sample sizes and heterogeneity in the measurement of neuroticism. Here we report a genome-wide association study of neuroticism in 91,370 participants of the UK Biobank cohort and a combined meta-analysis which includes a further 6,659 participants from the Generation Scotland Scottish Family Health Study (GS:SFHS) and 8,687 participants from a QIMR Berghofer Medical Research Institute (QIMR) cohort. All participants were assessed using the same neuroticism instrument, the Eysenck Personality Questionnaire-Revised (EPQ-R-S) Short Form Neuroticism scale. We found a SNP-based heritability estimate for neuroticism of approximately 15% (SE = 0.7...

Research paper thumbnail of GWAS for executive function and processing speed suggests involvement of the CADM2 gene

Molecular psychiatry, Jan 14, 2015

To identify common variants contributing to normal variation in two specific domains of cognitive... more To identify common variants contributing to normal variation in two specific domains of cognitive functioning, we conducted a genome-wide association study (GWAS) of executive functioning and information processing speed in non-demented older adults from the CHARGE (Cohorts for Heart and Aging Research in Genomic Epidemiology) consortium. Neuropsychological testing was available for 5429-32 070 subjects of European ancestry aged 45 years or older, free of dementia and clinical stroke at the time of cognitive testing from 20 cohorts in the discovery phase. We analyzed performance on the Trail Making Test parts A and B, the Letter Digit Substitution Test (LDST), the Digit Symbol Substitution Task (DSST), semantic and phonemic fluency tests, and the Stroop Color and Word Test. Replication was sought in 1311-21860 subjects from 20 independent cohorts. A significant association was observed in the discovery cohorts for the single-nucleotide polymorphism (SNP) rs17518584 (discovery P-valu...

Research paper thumbnail of Common polygenic risk for autism spectrum disorder (ASD) is associated with cognitive ability in the general population

Molecular psychiatry, Jan 10, 2015

Cognitive impairment is common among individuals diagnosed with autism spectrum disorder (ASD) an... more Cognitive impairment is common among individuals diagnosed with autism spectrum disorder (ASD) and attention-deficit hyperactivity disorder (ADHD). It has been suggested that some aspects of intelligence are preserved or even superior in people with ASD compared with controls, but consistent evidence is lacking. Few studies have examined the genetic overlap between cognitive ability and ASD/ADHD. The aim of this study was to examine the polygenic overlap between ASD/ADHD and cognitive ability in individuals from the general population. Polygenic risk for ADHD and ASD was calculated from genome-wide association studies of ASD and ADHD conducted by the Psychiatric Genetics Consortium. Risk scores were created in three independent cohorts: Generation Scotland Scottish Family Health Study (GS:SFHS) (n=9863), the Lothian Birth Cohorts 1936 and 1921 (n=1522), and the Brisbane Adolescent Twin Sample (BATS) (n=921). We report that polygenic risk for ASD is positively correlated with general...

Research paper thumbnail of Genetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53 949)

Molecular psychiatry, 2015

General cognitive function is substantially heritable across the human life course from adolescen... more General cognitive function is substantially heritable across the human life course from adolescence to old age. We investigated the genetic contribution to variation in this important, health- and well-being-related trait in middle-aged and older adults. We conducted a meta-analysis of genome-wide association studies of 31 cohorts (N=53 949) in which the participants had undertaken multiple, diverse cognitive tests. A general cognitive function phenotype was tested for, and created in each cohort by principal component analysis. We report 13 genome-wide significant single-nucleotide polymorphism (SNP) associations in three genomic regions, 6q16.1, 14q12 and 19q13.32 (best SNP and closest gene, respectively: rs10457441, P=3.93 × 10(-9), MIR2113; rs17522122, P=2.55 × 10(-8), AKAP6; rs10119, P=5.67 × 10(-9), APOE/TOMM40). We report one gene-based significant association with the HMGN1 gene located on chromosome 21 (P=1 × 10(-6)). These genes have previously been associated with neurops...

Research paper thumbnail of Multi-Ethnic Genome-Wide Association Study of Cerebral White Matter Hyperintensities on MRI

Circulation. Cardiovascular genetics, Jan 7, 2015

Research paper thumbnail of Genetic diversity is a predictor of mortality in humans

Research paper thumbnail of Genetic Predictors of Fibrin D-Dimer Levels in Healthy Adults

Circulation, 2011

Background— Fibrin fragment D-dimer, one of several peptides produced when crosslinked fibrin is ... more Background— Fibrin fragment D-dimer, one of several peptides produced when crosslinked fibrin is degraded by plasmin, is the most widely used clinical marker of activated blood coagulation. To identity genetic loci influencing D-dimer levels, we performed the first large-scale, genome-wide association search. Methods and Results— A genome-wide investigation of the genomic correlates of plasma D-dimer levels was conducted among 21 052 European-ancestry adults. Plasma levels of D-dimer were measured independently in each of 13 cohorts. Each study analyzed the association between ≈2.6 million genotyped and imputed variants across the 22 autosomal chromosomes and natural-log–transformed D-dimer levels using linear regression in additive genetic models adjusted for age and sex. Among all variants, 74 exceeded the genome-wide significance threshold and marked 3 regions. At 1p22, rs12029080 ( P =6.4×10 −52 ) was 46.0 kb upstream from F3 , coagulation factor III (tissue factor). At 1q24, rs...

Research paper thumbnail of Multiethnic Meta-Analysis of Genome-Wide Association Studies in >100 000 Subjects Identifies 23 Fibrinogen-Associated Loci but No Strong Evidence of a Causal Association Between Circulating Fibrinogen and Cardiovascular Disease

Circulation, 2013

Background— Estimates of the heritability of plasma fibrinogen concentration, an established pred... more Background— Estimates of the heritability of plasma fibrinogen concentration, an established predictor of cardiovascular disease, range from 34% to 50%. Genetic variants so far identified by genome-wide association studies explain only a small proportion (<2%) of its variation. Methods and Results— We conducted a meta-analysis of 28 genome-wide association studies including >90 000 subjects of European ancestry, the first genome-wide association meta-analysis of fibrinogen levels in 7 studies in blacks totaling 8289 samples, and a genome-wide association study in Hispanics totaling 1366 samples. Evaluation for association of single-nucleotide polymorphisms with clinical outcomes included a total of 40 695 cases and 85 582 controls for coronary artery disease, 4752 cases and 24 030 controls for stroke, and 3208 cases and 46 167 controls for venous thromboembolism. Overall, we identified 24 genome-wide significant ( P <5×10 −8 ) independent signals in 23 loci, including 15 no...

Research paper thumbnail of Polygenic risk scores for smoking: predictors for alcohol and cannabis use?

Research paper thumbnail of GWAS of 126,559 Individuals Identifies Genetic Variants Associated with Educational Attainment

Science, 2013

Genetic College Many genomic elements in humans are associated with behavior, including education... more Genetic College Many genomic elements in humans are associated with behavior, including educational attainment. In a genome-wide association study including more than 100,000 samples, Rietveld et al. (p. 1467 , published online 30 May; see the Perspective by Flint and Munafò ) looked for genes related to educational attainment in Caucasians. Small genetic effects at three loci appeared to impact educational attainment.

Research paper thumbnail of Integration of DNA methylation datasets for individual prediction

BackgroundEpigenetic scores (EpiScores) can provide blood-based biomarkers of lifestyle and disea... more BackgroundEpigenetic scores (EpiScores) can provide blood-based biomarkers of lifestyle and disease risk. Projecting a new individual onto a reference panel would aid precision medicine and risk communication but is challenging due to the separation of technical and biological sources of variation with array data. Normalisation methods can standardize data distributions but may also remove population-level biological variation.MethodsWe compared two independent birth cohorts (Lothian Birth Cohorts of 1921 and 1936 – nLBC1921= 387 and nLBC1936= 498) with DNA methylation assessed at the same chronological age (79 years) and processed in the same lab but in different years and experimental batches. We examined the effect of 15 normalisation methods on a BMI EpiScore (trained in an external cohort of 18,413 individuals) when the cohorts were normalised separately and together.ResultsThe BMI EpiScore explained a maximum variance of R2=24.5% in BMI in LBC1936 after SWAN normalisation. Alt...

Research paper thumbnail of Genetic and epigenetic architectures of neurological protein biomarkers in the Lothian Birth Cohort 1936 - GWAS Proteins

bioRxiv, 2019

Data supporting the paper Hillary et al. "Genetic and epigenetic architectures of neurologic... more Data supporting the paper Hillary et al. "Genetic and epigenetic architectures of neurological protein biomarkers in the Lothian Birth Cohort 1936" (In submission). Specifically GWAS proteins.

Research paper thumbnail of Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits

Research paper thumbnail of Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits

Research paper thumbnail of Genetic contributions to Trail Making Test performance in UK Biobank

Molecular Psychiatry, 2017

Research paper thumbnail of Genetic and lifestyle risk factors for MRI-defined brain infarcts in a population-based setting

Neurology, 2019

ObjectiveTo explore genetic and lifestyle risk factors of MRI-defined brain infarcts (BI) in larg... more ObjectiveTo explore genetic and lifestyle risk factors of MRI-defined brain infarcts (BI) in large population-based cohorts.MethodsWe performed meta-analyses of genome-wide association studies (GWAS) and examined associations of vascular risk factors and their genetic risk scores (GRS) with MRI-defined BI and a subset of BI, namely, small subcortical BI (SSBI), in 18 population-based cohorts (n = 20,949) from 5 ethnicities (3,726 with BI, 2,021 with SSBI). Top loci were followed up in 7 population-based cohorts (n = 6,862; 1,483 with BI, 630 with SBBI), and we tested associations with related phenotypes including ischemic stroke and pathologically defined BI.ResultsThe mean prevalence was 17.7% for BI and 10.5% for SSBI, steeply rising after age 65. Two loci showed genome-wide significant association with BI: FBN2, p = 1.77 × 10−8; and LINC00539/ZDHHC20, p = 5.82 × 10−9. Both have been associated with blood pressure (BP)–related phenotypes, but did not replicate in the smaller follo...