Fadwa Jroundi - Academia.edu (original) (raw)

Papers by Fadwa Jroundi

Microorganisms, May 19, 2024

This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY

Boletín informativo, Oct 10, 2023

Science of The Total Environment

Journal of Hazardous Materials, Mar 1, 2023

INTED proceedings, Mar 1, 2022

Journal of Hazardous Materials, Feb 1, 2021

The potential use of microorganisms in the bioremediation of U pollution has been extensively des... more The potential use of microorganisms in the bioremediation of U pollution has been extensively described. However, a lack of knowledge on molecular resistance mechanisms has become a challenge for the use of these technologies. We reported on the transcriptomic and microscopic response of Stenotrophomonas bentonitica BII-R7 exposed to 100 and 250 μM of U. Results showed that exposure to 100 μM displayed up-regulation of 185 and 148 genes during the lag and exponential phases, respectively, whereas 143 and 194 were down-regulated, out of 3786 genes (>1.5-fold change). Exposure to 250 μM of U showed up-regulation of 68 genes and down-regulation of 290 during the lag phase. Genes involved in cell wall and membrane protein synthesis, efflux systems and phosphatases were up-regulated under all conditions tested. Microscopic observations evidenced the formation of U-phosphate minerals at membrane and extracellular levels. Thus, a biphasic process is likely to occur: the increased cell wall would promote the biosorption of U to the cell surface and its precipitation as U-phosphate minerals enhanced by phosphatases. Transport systems would prevent U accumulation in the cytoplasm. These findings contribute to an understanding of how microbes cope with U toxicity, thus allowing for the development of efficient bioremediation strategies.

Journal of Hazardous Materials, Sep 1, 2023

Science of The Total Environment, Mar 1, 2023

Frontiers in Microbiology, Mar 16, 2023

To date, the increasing production of radioactive waste due to the extensive use of nuclear power... more To date, the increasing production of radioactive waste due to the extensive use of nuclear power is becoming a global environmental concern for society. For this reason, many countries have been considering the use of deep geological repositories (DGRs) for the safe disposal of this waste in the near future. Several DGR designs have been chemically, physically, and geologically well characterized. However, less is known about the influence of microbial processes for the safety of these disposal systems. The existence of microorganisms in many materials selected for their use as barriers for DGRs, including clay, cementitious materials, or crystalline rocks (e.g., granites), has previously been reported. The role that microbial processes could play in the metal corrosion of canisters containing radioactive waste, the transformation of clay minerals, gas production, and the mobility of the radionuclides characteristic of such residues is well known. Among the radionuclides present in radioactive waste, selenium (Se), uranium (U), and curium (Cm) are of great interest. Se and Cm are common components of the spent nuclear fuel residues, mainly as 79 Se isotope (half-life 3.27 × 10 5 years), 247 Cm (half-life: 1.6 × 10 7 years) and 248 Cm (half-life: 3.5 × 10 6 years) isotopes, respectively. This review presents an up-to-date overview about how microbes occurring in the surroundings of a DGR may influence their safety, with a particular focus on the radionuclide-microbial interactions. Consequently, this paper will provide an exhaustive understanding about the influence of microorganisms in the safety of planned radioactive waste repositories, which in turn might improve their implementation and efficiency.

Science of The Total Environment

Microbiology monographs, 2022

Microbial Ecology, Apr 13, 2010

The deterioration of the stone built and sculptural heritage has prompted the search and developm... more The deterioration of the stone built and sculptural heritage has prompted the search and development of novel consolidation/protection treatments that can overcome the limitations of traditional ones. Attention has been drawn to bioconservation, particularly bacterial carbonatogenesis (i.e. bacterially induced calcium carbonate precipitation), as a new environmentally friendly effective conservation strategy, especially suitable for carbonate stones. Here, we study the effects of an in situ bacterial bioconsolidation treatment applied on porous limestone (calcarenite) in the sixteenth century San Jeronimo Monastery in Granada, Spain. The treatment consisted in the application of a nutritional solution (with and without Myxococcus xanthus inoculation) on decayed calcarenite stone blocks. The treatment promoted the development of heterotrophic bacteria able to induce carbonatogenesis. Both the consolidation effect of the treatment and the response of the culturable bacterial community present in the decayed stone were evaluated. A significant surface strengthening (consolidation) of the stone, without altering its surface appearance or inducing any detrimental side effect, was achieved upon application of the nutritional solution. The treatment efficacy was independent of the presence of M. xanthus (which is known as an effective carbonatogenic bacterium). The genetic diversity of 116 bacterial strains isolated from the stone, of which 113 strains showed carbonatogenic activity, was analysed by repetitive extragenic palindromic-polymerase chain reaction (REP-PCR) and 16S rRNA gene sequencing. The strains were distributed into 31 groups on the basis of their REP-PCR patterns, and a representative strain of each group was subjected to 16S rRNA gene sequencing. Analysis of these sequences showed that isolates belong to a wide variety of phylogenetic groups being closely related to species of 15 genera within the Proteobacteria, Firmicutes and the Actinobacteria. This study shows that the abundant carbonatogenic bacteria present in the decayed stone are able to effectively consolidate the degraded stone by producing new calcite (and vaterite) cement if an adequate nutritional solution is used. The implications of these results for the conservation of cultural heritage are discussed.

Goldschmidt 2019, Barcelona (Spain), 18th-23th august, 201

Frontiers in Earth Science, 2020

Mechanisms underlying barite precipitation in seawater and the precise depths of barite precipita... more Mechanisms underlying barite precipitation in seawater and the precise depths of barite precipitation in the water column have been debated for decades. Here we present a detailed study of water column barite distribution in the mesopelagic zone at diverse stations in the open ocean by analyzing samples collected using multiple unit large volume in-situ filtration systems in the Pacific, Atlantic and Indian oceans. Our results demonstrate that barite is an organo-mineral particularly abundant at intermediate depths throughout the world's ocean regardless of saturation state with respect to barite. This is confirming the notion of precipitation at depths of intense organic matter mineralization. Our observations further support the link between barite formation and microbial activity, demonstrated by the association of barite particles with organic matter aggregates and with extracellular polymeric substances. Evidence for microbial mediation is consistent with previous experimental work showing that in bacterial biofilms Ba binds to phosphate groups on cell surfaces and within extracellular polymeric substances. This organoaccumulation promotes high concentrations of Ba leading to saturated microenvironments and nucleation sites favoring precipitation. The distribution of Ba isotopes in the water column and in particulate matter is also consistent with the proposed precipitation mechanism.

Chemical Geology, 2018

Ocean export production is a key constituent in the global carbon cycle impacting climate. Past o... more Ocean export production is a key constituent in the global carbon cycle impacting climate. Past ocean export production is commonly estimated by means of barite and Barium proxies. However, the precise mechanisms underlying barite precipitation in the undersaturated marine water column are not fully understood. Here we present a detailed mineralogical and crystallographic analysis of barite from size-fractionated particulate material collected using multiple unit large volume in-situ filtration systems in the North Atlantic and the Southern Ocean. Our data suggest that marine barite forms from an initial amorphous phosphorus-rich phase that binds Ba, which evolves into barite crystals whereby phosphate groups are substituted by sulfate. Scanning electron microscopy observations also show the association of barite particles with organic matter aggregates and with extracellular polymeric substances (EPS). These results are consistent with experimental work showing that in bacterial biofilms Ba binds to phosphate groups in both cells and EPS, which promotes locally high concentrations of Ba leading to saturated microenvironments favoring barite precipitation. These results strongly suggest a similar precipitation mechanism in the ocean, which is consistent with the close link between bacterial production and abundance of Ba-rich particulates in the water column. We argue that EPS play a major role in mediating barite formation in the undersaturated oceanic water column; specifically, increased productivity and organic matter degradation in the mesopelagic zone would entail more extensive EPS production, thereby promoting Ba bioaccumulation and appropriate microenvironments for barite precipitation. This observation contributes toward better understanding of Ba proxies and their utility for reconstructing past ocean export productivity. This article is part of a special issue entitled: "Cycles of trace elements and isotopes in the ocean-GEOT-RACES and beyond"-edited by Tim M. Conway, Tristan Horner, Yves Plancherel, and Aridane G. González. contradiction, it has been suggested that barite precipitates in baritesupersaturated microenvironments generated by the biological degradation of sinking organic matter. Since the early sixties (e.g., Chow and Goldberg, 1960) a vast literature on Ba has provided evidence for a link between barite formation in the ocean and biological activity. Dehairs et al. (1980) and Bishop (1988) proposed that decomposition of

Science of The Total Environment

INTED2022 Proceedings, 2022

Journal of Building Engineering, 2022

npj Materials Degradation, 2021

Much stone sculptural and architectural heritage is crumbling, especially in intense tropical env... more Much stone sculptural and architectural heritage is crumbling, especially in intense tropical environments. This is exemplified by significant losses on carvings made of tuff stone at the Classic Maya site of Copan. Here we demonstrate that Copan stone primarily decays due to stress generated by humidity-related clay swelling resulting in spalling and material loss, a damaging process that appears to be facilitated by the microbial bioweathering of the tuff stone minerals (particularly feldspars). Such a weathering process is not prevented by traditional polymer- and alkoxysilane-based consolidants applied in the past. As an alternative to such unsuccessful conservation treatments, we prove the effectiveness of a bioconservation treatment based on the application of a sterile nutritional solution that selectively activates the stone´s indigenous bacteria able to produce CaCO3 biocement. The treatment generates a bond with the original matrix to significantly strengthen areas of loss...

Microorganisms, May 19, 2024

This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY

Boletín informativo, Oct 10, 2023

Science of The Total Environment

Journal of Hazardous Materials, Mar 1, 2023

INTED proceedings, Mar 1, 2022

Journal of Hazardous Materials, Feb 1, 2021

The potential use of microorganisms in the bioremediation of U pollution has been extensively des... more The potential use of microorganisms in the bioremediation of U pollution has been extensively described. However, a lack of knowledge on molecular resistance mechanisms has become a challenge for the use of these technologies. We reported on the transcriptomic and microscopic response of Stenotrophomonas bentonitica BII-R7 exposed to 100 and 250 μM of U. Results showed that exposure to 100 μM displayed up-regulation of 185 and 148 genes during the lag and exponential phases, respectively, whereas 143 and 194 were down-regulated, out of 3786 genes (>1.5-fold change). Exposure to 250 μM of U showed up-regulation of 68 genes and down-regulation of 290 during the lag phase. Genes involved in cell wall and membrane protein synthesis, efflux systems and phosphatases were up-regulated under all conditions tested. Microscopic observations evidenced the formation of U-phosphate minerals at membrane and extracellular levels. Thus, a biphasic process is likely to occur: the increased cell wall would promote the biosorption of U to the cell surface and its precipitation as U-phosphate minerals enhanced by phosphatases. Transport systems would prevent U accumulation in the cytoplasm. These findings contribute to an understanding of how microbes cope with U toxicity, thus allowing for the development of efficient bioremediation strategies.

Journal of Hazardous Materials, Sep 1, 2023

Science of The Total Environment, Mar 1, 2023

Frontiers in Microbiology, Mar 16, 2023

To date, the increasing production of radioactive waste due to the extensive use of nuclear power... more To date, the increasing production of radioactive waste due to the extensive use of nuclear power is becoming a global environmental concern for society. For this reason, many countries have been considering the use of deep geological repositories (DGRs) for the safe disposal of this waste in the near future. Several DGR designs have been chemically, physically, and geologically well characterized. However, less is known about the influence of microbial processes for the safety of these disposal systems. The existence of microorganisms in many materials selected for their use as barriers for DGRs, including clay, cementitious materials, or crystalline rocks (e.g., granites), has previously been reported. The role that microbial processes could play in the metal corrosion of canisters containing radioactive waste, the transformation of clay minerals, gas production, and the mobility of the radionuclides characteristic of such residues is well known. Among the radionuclides present in radioactive waste, selenium (Se), uranium (U), and curium (Cm) are of great interest. Se and Cm are common components of the spent nuclear fuel residues, mainly as 79 Se isotope (half-life 3.27 × 10 5 years), 247 Cm (half-life: 1.6 × 10 7 years) and 248 Cm (half-life: 3.5 × 10 6 years) isotopes, respectively. This review presents an up-to-date overview about how microbes occurring in the surroundings of a DGR may influence their safety, with a particular focus on the radionuclide-microbial interactions. Consequently, this paper will provide an exhaustive understanding about the influence of microorganisms in the safety of planned radioactive waste repositories, which in turn might improve their implementation and efficiency.

Science of The Total Environment

Microbiology monographs, 2022

Microbial Ecology, Apr 13, 2010

The deterioration of the stone built and sculptural heritage has prompted the search and developm... more The deterioration of the stone built and sculptural heritage has prompted the search and development of novel consolidation/protection treatments that can overcome the limitations of traditional ones. Attention has been drawn to bioconservation, particularly bacterial carbonatogenesis (i.e. bacterially induced calcium carbonate precipitation), as a new environmentally friendly effective conservation strategy, especially suitable for carbonate stones. Here, we study the effects of an in situ bacterial bioconsolidation treatment applied on porous limestone (calcarenite) in the sixteenth century San Jeronimo Monastery in Granada, Spain. The treatment consisted in the application of a nutritional solution (with and without Myxococcus xanthus inoculation) on decayed calcarenite stone blocks. The treatment promoted the development of heterotrophic bacteria able to induce carbonatogenesis. Both the consolidation effect of the treatment and the response of the culturable bacterial community present in the decayed stone were evaluated. A significant surface strengthening (consolidation) of the stone, without altering its surface appearance or inducing any detrimental side effect, was achieved upon application of the nutritional solution. The treatment efficacy was independent of the presence of M. xanthus (which is known as an effective carbonatogenic bacterium). The genetic diversity of 116 bacterial strains isolated from the stone, of which 113 strains showed carbonatogenic activity, was analysed by repetitive extragenic palindromic-polymerase chain reaction (REP-PCR) and 16S rRNA gene sequencing. The strains were distributed into 31 groups on the basis of their REP-PCR patterns, and a representative strain of each group was subjected to 16S rRNA gene sequencing. Analysis of these sequences showed that isolates belong to a wide variety of phylogenetic groups being closely related to species of 15 genera within the Proteobacteria, Firmicutes and the Actinobacteria. This study shows that the abundant carbonatogenic bacteria present in the decayed stone are able to effectively consolidate the degraded stone by producing new calcite (and vaterite) cement if an adequate nutritional solution is used. The implications of these results for the conservation of cultural heritage are discussed.

Goldschmidt 2019, Barcelona (Spain), 18th-23th august, 201

Frontiers in Earth Science, 2020

Mechanisms underlying barite precipitation in seawater and the precise depths of barite precipita... more Mechanisms underlying barite precipitation in seawater and the precise depths of barite precipitation in the water column have been debated for decades. Here we present a detailed study of water column barite distribution in the mesopelagic zone at diverse stations in the open ocean by analyzing samples collected using multiple unit large volume in-situ filtration systems in the Pacific, Atlantic and Indian oceans. Our results demonstrate that barite is an organo-mineral particularly abundant at intermediate depths throughout the world's ocean regardless of saturation state with respect to barite. This is confirming the notion of precipitation at depths of intense organic matter mineralization. Our observations further support the link between barite formation and microbial activity, demonstrated by the association of barite particles with organic matter aggregates and with extracellular polymeric substances. Evidence for microbial mediation is consistent with previous experimental work showing that in bacterial biofilms Ba binds to phosphate groups on cell surfaces and within extracellular polymeric substances. This organoaccumulation promotes high concentrations of Ba leading to saturated microenvironments and nucleation sites favoring precipitation. The distribution of Ba isotopes in the water column and in particulate matter is also consistent with the proposed precipitation mechanism.

Chemical Geology, 2018

Ocean export production is a key constituent in the global carbon cycle impacting climate. Past o... more Ocean export production is a key constituent in the global carbon cycle impacting climate. Past ocean export production is commonly estimated by means of barite and Barium proxies. However, the precise mechanisms underlying barite precipitation in the undersaturated marine water column are not fully understood. Here we present a detailed mineralogical and crystallographic analysis of barite from size-fractionated particulate material collected using multiple unit large volume in-situ filtration systems in the North Atlantic and the Southern Ocean. Our data suggest that marine barite forms from an initial amorphous phosphorus-rich phase that binds Ba, which evolves into barite crystals whereby phosphate groups are substituted by sulfate. Scanning electron microscopy observations also show the association of barite particles with organic matter aggregates and with extracellular polymeric substances (EPS). These results are consistent with experimental work showing that in bacterial biofilms Ba binds to phosphate groups in both cells and EPS, which promotes locally high concentrations of Ba leading to saturated microenvironments favoring barite precipitation. These results strongly suggest a similar precipitation mechanism in the ocean, which is consistent with the close link between bacterial production and abundance of Ba-rich particulates in the water column. We argue that EPS play a major role in mediating barite formation in the undersaturated oceanic water column; specifically, increased productivity and organic matter degradation in the mesopelagic zone would entail more extensive EPS production, thereby promoting Ba bioaccumulation and appropriate microenvironments for barite precipitation. This observation contributes toward better understanding of Ba proxies and their utility for reconstructing past ocean export productivity. This article is part of a special issue entitled: "Cycles of trace elements and isotopes in the ocean-GEOT-RACES and beyond"-edited by Tim M. Conway, Tristan Horner, Yves Plancherel, and Aridane G. González. contradiction, it has been suggested that barite precipitates in baritesupersaturated microenvironments generated by the biological degradation of sinking organic matter. Since the early sixties (e.g., Chow and Goldberg, 1960) a vast literature on Ba has provided evidence for a link between barite formation in the ocean and biological activity. Dehairs et al. (1980) and Bishop (1988) proposed that decomposition of

Science of The Total Environment

INTED2022 Proceedings, 2022

Journal of Building Engineering, 2022

npj Materials Degradation, 2021

Much stone sculptural and architectural heritage is crumbling, especially in intense tropical env... more Much stone sculptural and architectural heritage is crumbling, especially in intense tropical environments. This is exemplified by significant losses on carvings made of tuff stone at the Classic Maya site of Copan. Here we demonstrate that Copan stone primarily decays due to stress generated by humidity-related clay swelling resulting in spalling and material loss, a damaging process that appears to be facilitated by the microbial bioweathering of the tuff stone minerals (particularly feldspars). Such a weathering process is not prevented by traditional polymer- and alkoxysilane-based consolidants applied in the past. As an alternative to such unsuccessful conservation treatments, we prove the effectiveness of a bioconservation treatment based on the application of a sterile nutritional solution that selectively activates the stone´s indigenous bacteria able to produce CaCO3 biocement. The treatment generates a bond with the original matrix to significantly strengthen areas of loss...