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Papers by Francisco Hontoria
The American Naturalist, Aug 1, 2022
International Journal of Molecular Sciences, May 15, 2020
Zoological Journal of the Linnean Society
Hypersaline lakes in arid and semi-arid areas are unique ecosystems that harbour unique extremoph... more Hypersaline lakes in arid and semi-arid areas are unique ecosystems that harbour unique extremophile organisms such as Artemia, the paradigmatic example of adaptation to harsh living conditions. We assessed the mitogenomic biodiversity of Artemia species from the Tibetan Plateau, China, a remote and yet minimally disturbed ecosystem with a variety of hypersaline lakes. Analysis of ten Tibetan salt lakes demonstrated the occurrence of two regionally endemic species, Artemia tibetiana and Artemia sorgeloosi, with the latter being the dominant species with eight localities. Both species coexist in Jingyu and Jibu lakes, representing the first case of natural distribution overlap between sexual Artemia species. Artemia sorgeloosi exhibits higher genetic diversity and interpopulation differences, a result consistent with the heterogeneity of local salt lakes, local Artemia population demographics, and their adaptive potentials. Significant FST values demonstrate a gene flow barrier betwe...
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
Journal of Crustacean Biology
Species of Artemia are regionally endemic branchiopod crustaceans composed of sexual species and ... more Species of Artemia are regionally endemic branchiopod crustaceans composed of sexual species and parthenogenetic lineages, and represent an excellent model for studying adaptation and speciation to extreme and heterogeneous hypersaline environments. We tested hypotheses of whether populations from the Tibetan Plateau belong to A. tibetianaAbatzopoulos, Zhang & Sorgeloos,1998 and whether a population from Kazakhstan is a new species, using other Asian species of Artemia as outgroups. We conducted a multitrait phylogenetic study based on the complete mitogenome, mitochondrial (COI, 12S, 16S) and nuclear (microsatellites, ITS1) markers, and a suit of uni- and multivariate morphological traits. Our results led to the discovery of two new species, one from the Tibetan Plateau (Haiyan Lake) in China (Artemia sorgeloosin. sp.) and a second from Kazakhstan (Artemia amatin. sp.). Our analysis demonstrate that A. tibetiana and A. amatin. sp. are monophyletic, whereas A. sorgeloosin. sp., and ...
Genetics
Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthen... more Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to have ZW chromosomes, these are not well characterized, and it is unclear whether they are shared across the clade. Furthermore, the underlying genetic architecture of the transmission of asexuality, which can occur when rare males mate with closely related sexual females, is not well understood. We produced a chromosome-level assembly for the sexual Eurasian species Artemia sinica and characterized in detail the pair of sex chromosomes of this species. We combined this new assembly with short-read genomic data for the sexual species Artemia sp. Kazakhstan and several asexual lineages of Artemia parthenogenetica, allowing us to perform an in-depth characterization of sex-chromosome evolution across the genus. We identified a small differentiated region of the ZW pair that is shared by all sexual and ...
Frontiers in Marine Science
The fast and remarkable growth of global aquaculture in recent years has created new challenges, ... more The fast and remarkable growth of global aquaculture in recent years has created new challenges, such as guaranteeing a sustainable supply of raw materials used for aquafeed formulation. Gammarids are low-trophic crustaceans with an increasing interest in aquaculture due to their high nutritional profiles and their capacity to grow under high-density conditions. Moreover, gammarids have the ability to thrive on a wide range of sidestreams while accumulating relatively high levels of long-chain (≥C20) polyunsaturated fatty acids (LC-PUFA). In the present study, juveniles of the marine gammarid Gammarus locusta were cultured at four different temperatures (5°C, 10°C, 15°C, and 20°C) for 21 days and fed three diets, including the seaweed Fucus sp. as control, and carrot leaves and coconut flesh representing two agri-food industry sidestreams. Our results indicate that both the survival and biomass of G. locusta were highly affected by diet, with coconut showing the lowest growth perfor...
Determining how and how often asexual lineages emerge within sexual species is central to our und... more Determining how and how often asexual lineages emerge within sexual species is central to our understanding of sex-asex transitions and the long-term maintenance of sex. Asexuality can arise "by transmission" from an existing asexual lineage to a new one, through different types of crosses. The occurrence of these crosses, cryptic sex, variation in ploidy and recombination within asexuals greatly complicates the study of sex-asex transitions, as they preclude the use of standard phylogenetic methods and genetic distance metrics. In this study we show how to overcome these challenges by developing new approaches to investigate the origin of the various asexual lineages of the brine shrimp Artemia parthenogenetica. We use a large sample of asexuals, including all known polyploids, and their sexual relatives. We combine flow cytometry with mitochondrial and nuclear DNA data. We develop new genetic distance measures and methods to compare various scenarios describing the origi...
Trabajo presentado en el 7th Fish and Shellfish Larviculture Symposium (Larvi 2017), celebrado en... more Trabajo presentado en el 7th Fish and Shellfish Larviculture Symposium (Larvi 2017), celebrado en Ghent (Belgica) del 4 al 7 de septiembre de 2017
Trabajo presentado en la XV Reunion Cientifica de la Sociedad Espanola de Cromatografia y Tecnica... more Trabajo presentado en la XV Reunion Cientifica de la Sociedad Espanola de Cromatografia y Tecnicas Afines (SECyTA 2015) junto con la VII Reunion Nacional de la Sociedad Espanola de Espectrometria de Masas (SEEM 2015), celebrada en Castellon de la Plana (Espana), del 27 al 30 de octubre de 2015
Trabajo presentado en el XV Congreso Nacional de Acuicultura y el I Congreso Iberico de Acuicultu... more Trabajo presentado en el XV Congreso Nacional de Acuicultura y el I Congreso Iberico de Acuicultura, celebrados en Huelva (Espana) del 13 al 16 de octubre de 2015
The American Naturalist, Aug 1, 2022
International Journal of Molecular Sciences, May 15, 2020
Zoological Journal of the Linnean Society
Hypersaline lakes in arid and semi-arid areas are unique ecosystems that harbour unique extremoph... more Hypersaline lakes in arid and semi-arid areas are unique ecosystems that harbour unique extremophile organisms such as Artemia, the paradigmatic example of adaptation to harsh living conditions. We assessed the mitogenomic biodiversity of Artemia species from the Tibetan Plateau, China, a remote and yet minimally disturbed ecosystem with a variety of hypersaline lakes. Analysis of ten Tibetan salt lakes demonstrated the occurrence of two regionally endemic species, Artemia tibetiana and Artemia sorgeloosi, with the latter being the dominant species with eight localities. Both species coexist in Jingyu and Jibu lakes, representing the first case of natural distribution overlap between sexual Artemia species. Artemia sorgeloosi exhibits higher genetic diversity and interpopulation differences, a result consistent with the heterogeneity of local salt lakes, local Artemia population demographics, and their adaptive potentials. Significant FST values demonstrate a gene flow barrier betwe...
Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
Journal of Crustacean Biology
Species of Artemia are regionally endemic branchiopod crustaceans composed of sexual species and ... more Species of Artemia are regionally endemic branchiopod crustaceans composed of sexual species and parthenogenetic lineages, and represent an excellent model for studying adaptation and speciation to extreme and heterogeneous hypersaline environments. We tested hypotheses of whether populations from the Tibetan Plateau belong to A. tibetianaAbatzopoulos, Zhang & Sorgeloos,1998 and whether a population from Kazakhstan is a new species, using other Asian species of Artemia as outgroups. We conducted a multitrait phylogenetic study based on the complete mitogenome, mitochondrial (COI, 12S, 16S) and nuclear (microsatellites, ITS1) markers, and a suit of uni- and multivariate morphological traits. Our results led to the discovery of two new species, one from the Tibetan Plateau (Haiyan Lake) in China (Artemia sorgeloosin. sp.) and a second from Kazakhstan (Artemia amatin. sp.). Our analysis demonstrate that A. tibetiana and A. amatin. sp. are monophyletic, whereas A. sorgeloosin. sp., and ...
Genetics
Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthen... more Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to have ZW chromosomes, these are not well characterized, and it is unclear whether they are shared across the clade. Furthermore, the underlying genetic architecture of the transmission of asexuality, which can occur when rare males mate with closely related sexual females, is not well understood. We produced a chromosome-level assembly for the sexual Eurasian species Artemia sinica and characterized in detail the pair of sex chromosomes of this species. We combined this new assembly with short-read genomic data for the sexual species Artemia sp. Kazakhstan and several asexual lineages of Artemia parthenogenetica, allowing us to perform an in-depth characterization of sex-chromosome evolution across the genus. We identified a small differentiated region of the ZW pair that is shared by all sexual and ...
Frontiers in Marine Science
The fast and remarkable growth of global aquaculture in recent years has created new challenges, ... more The fast and remarkable growth of global aquaculture in recent years has created new challenges, such as guaranteeing a sustainable supply of raw materials used for aquafeed formulation. Gammarids are low-trophic crustaceans with an increasing interest in aquaculture due to their high nutritional profiles and their capacity to grow under high-density conditions. Moreover, gammarids have the ability to thrive on a wide range of sidestreams while accumulating relatively high levels of long-chain (≥C20) polyunsaturated fatty acids (LC-PUFA). In the present study, juveniles of the marine gammarid Gammarus locusta were cultured at four different temperatures (5°C, 10°C, 15°C, and 20°C) for 21 days and fed three diets, including the seaweed Fucus sp. as control, and carrot leaves and coconut flesh representing two agri-food industry sidestreams. Our results indicate that both the survival and biomass of G. locusta were highly affected by diet, with coconut showing the lowest growth perfor...
Determining how and how often asexual lineages emerge within sexual species is central to our und... more Determining how and how often asexual lineages emerge within sexual species is central to our understanding of sex-asex transitions and the long-term maintenance of sex. Asexuality can arise "by transmission" from an existing asexual lineage to a new one, through different types of crosses. The occurrence of these crosses, cryptic sex, variation in ploidy and recombination within asexuals greatly complicates the study of sex-asex transitions, as they preclude the use of standard phylogenetic methods and genetic distance metrics. In this study we show how to overcome these challenges by developing new approaches to investigate the origin of the various asexual lineages of the brine shrimp Artemia parthenogenetica. We use a large sample of asexuals, including all known polyploids, and their sexual relatives. We combine flow cytometry with mitochondrial and nuclear DNA data. We develop new genetic distance measures and methods to compare various scenarios describing the origi...
Trabajo presentado en el 7th Fish and Shellfish Larviculture Symposium (Larvi 2017), celebrado en... more Trabajo presentado en el 7th Fish and Shellfish Larviculture Symposium (Larvi 2017), celebrado en Ghent (Belgica) del 4 al 7 de septiembre de 2017
Trabajo presentado en la XV Reunion Cientifica de la Sociedad Espanola de Cromatografia y Tecnica... more Trabajo presentado en la XV Reunion Cientifica de la Sociedad Espanola de Cromatografia y Tecnicas Afines (SECyTA 2015) junto con la VII Reunion Nacional de la Sociedad Espanola de Espectrometria de Masas (SEEM 2015), celebrada en Castellon de la Plana (Espana), del 27 al 30 de octubre de 2015
Trabajo presentado en el XV Congreso Nacional de Acuicultura y el I Congreso Iberico de Acuicultu... more Trabajo presentado en el XV Congreso Nacional de Acuicultura y el I Congreso Iberico de Acuicultura, celebrados en Huelva (Espana) del 13 al 16 de octubre de 2015