Graham Timmins - Academia.edu (original) (raw)

Papers by Graham Timmins

Research paper thumbnail of AMPK is activated during lysosomal damage via a galectin-ubiquitin signal transduction system

Autophagy, 2020

Lysosomal damage activates AMPK, a regulator of macroautophagy/autophagy and metabolism, and elic... more Lysosomal damage activates AMPK, a regulator of macroautophagy/autophagy and metabolism, and elicits a strong ubiquitination response. Here we show that the cytosolic lectin LGALS9 detects lysosomal membrane breach by binding to lumenal glycoepitopes, and directs both the ubiquitination response and AMPK activation. Proteomic analyses have revealed increased LGALS9 association with lysosomes, and concomitant changes in LGALS9 interactions with its newly identified partners that control ubiquitination-deubiquitination processes. An LGALS9-inetractor, deubiquitinase USP9X, dissociates from damaged lysosomes upon recognition of lumenal glycans by LGALS9. USP9X's departure from lysosomes promotes K63 ubiquitination and stimulation of MAP3K7/TAK1, an upstream kinase and activator of AMPK hitherto orphaned for a precise physiological function. Ubiquitin-activated MAP3K7/TAK1 controls AMPK specifically during lysosomal injury, caused by a spectrum of membrane-damaging or -permeabilizing agents, including silica crystals, the intracellular pathogen Mycobacterium tuberculosis, TNFSF10/TRAIL signaling, and the anti-diabetes drugs metformin. The LGALS9-ubiquitin system activating AMPK represents a novel signal transduction system contributing to various physiological outputs that are under the control of AMPK, including autophagy, MTOR, lysosomal maintenance and biogenesis, immunity, defense against microbes, and metabolic reprograming.

Research paper thumbnail of What are the challenges in commercial non-tuberculous mycobacteria (NTM) drug discovery and how should we move forward?

Expert Opinion on Drug Discovery, 2019

Research paper thumbnail of Potential for breath test diagnosis of urease positive pathogens in lung infections

Journal of Breath Research, 2019

Research paper thumbnail of Stable isotope biomarker breath tests for human metabolic and infectious diseases: a review of recent patent literature

Expert opinion on therapeutic patents, 2016

Stable isotope breath tests can rapidly and quantitatively report metabolic phenotypes and diseas... more Stable isotope breath tests can rapidly and quantitatively report metabolic phenotypes and disease in both humans and microbes in situ. The labelled compound is administered and acted upon by human or microbial metabolism, producing a labelled gas that is detected in exhaled breath. Areas covered: This review details the unique advantages (and disadvantages) of phenotypic stable isotope based breath tests. A review of recent US patent applications and prosecutions since 2010 is conducted. Finally, current clinical trials, product pipelines and approved products are discussed. Expert opinion: Stable isotope breath tests offer new approaches for rapid and minimally invasive detection and study of metabolic phenotypes, both human and microbial. The patent literature has developed considerably in the last 6 years, with over 30 patent applications made. Rates of issuance remain high, although rejections citing 35 U.S.C. §101(subject matter eligibility), §102 (novelty), §103 (obviousness)...

Research paper thumbnail of Ambroxol Induces Autophagy and Potentiates Rifampin Antimycobacterial Activity

Antimicrobial agents and chemotherapy, 2018

Host-directed therapy in tuberculosis is a potential adjunct to antibiotic chemotherapy directed ... more Host-directed therapy in tuberculosis is a potential adjunct to antibiotic chemotherapy directed at Ambroxol, a lead compound, emerged from a screen for autophagy-inducing drugs. At clinically relevant doses, ambroxol induced autophagy and and promoted mycobacterial killing in macrophages. Ambroxol also potentiated rifampin activity in a murine tuberculosis model.

Research paper thumbnail of Deuterated drugs; updates and obviousness analysis

Expert Opinion on Therapeutic Patents, 2017

Research paper thumbnail of Normobaric Hyperoxia Reduces Blood Occludin Fragments in Rats and Patients With Acute Ischemic Stroke

Stroke, 2017

Background and Purpose— Damage of the blood–brain barrier (BBB) increases the incidence of neurov... more Background and Purpose— Damage of the blood–brain barrier (BBB) increases the incidence of neurovascular complications, especially for cerebral hemorrhage after tPA (tissue-type plasminogen activator) therapy. Currently, there is no effective method to evaluate the extent of BBB damage to guide tPA use. Herein, we investigated whether blood levels of tight junction proteins could serve as biomarker of BBB damages in acute ischemic stroke (AIS) in both rats and patients. We examined whether this biomarker could reflect the extent of BBB permeability during cerebral ischemia/reperfusion and the effects of normobaric hyperoxia (NBO) on BBB damage. Methods— Rats were exposed to NBO (100% O 2 ) or normoxia (21% O 2 ) during middle cerebral artery occlusion. BBB permeability was determined. Occludin and claudin-5 in blood and cerebromicrovessels were measured. Patients with AIS were assigned to oxygen therapy or room air for 4 hours, and blood occludin and claudin-5 were measured at diffe...

Research paper thumbnail of Analysis of P. aeruginosa infection in patients

Research paper thumbnail of Use of a phosphorylated spin trap to discriminate between the hydroxyl radical and other oxidising species

Journal of the Chemical Society, Perkin Transactions 2, 1998

Page 1. J. Chem. Soc., Perkin Trans. 2, 1998 1715 Use of a phosphorylated spin trap to discrimina... more Page 1. J. Chem. Soc., Perkin Trans. 2, 1998 1715 Use of a phosphorylated spin trap to discriminate between the hydroxyl radical and other oxidising species Jean-Louis Clément,b Bruce C. Gilbert,*,a Win F. Ho,a Natalie D. Jackson ...

Research paper thumbnail of Direct Visualization of Mouse Brain Oxygen Distribution by Electron Paramagnetic Resonance Imaging: Application to Focal Cerebral Ischemia

Journal of Cerebral Blood Flow & Metabolism, 2009

Electron paramagnetic resonance imaging (EPRI) is a new modality for visualizing O2 distribution ... more Electron paramagnetic resonance imaging (EPRI) is a new modality for visualizing O2 distribution in tissues, such as the brain after stroke or after administration of drugs of abuse. We have recently shown that 3-acetoxymethoxycarbonyl-2,2,5,5-tetramethyl-1-pyrrolidinyloxyl [1] is a pro-imaging agent that can cross the blood–brain barrier. After hydrolysis by esterases, the anion of 3-carboxy-2,2,5,5-tetramethyl-1-tetramethyl-1-pyrrolidinyloxyl [2] is trapped in brain tissue. In this study, we investigated the feasibility of using this to map the changes of O2 concentration in mouse brain after focal ischemia. The decrease in tissue O2 concentration in the ischemic region of mouse brain was clearly visualized by EPRI. The hypoxic zone mapped by EPRI was spatially well correlated with the infarction area in the brain imaged by diffusion-weighted magnetic resonance imaging (MRI). Finally, we observed a decrease in the size of the hypoxic region when the mouse breathed higher levels of...

Research paper thumbnail of Measurement of S-nitrosothiols in extracellular fluids from healthy human volunteers and rheumatoid arthritis patients, using electron paramagnetic resonance spectrometry

Free Radical Biology and Medicine, 2005

In human tissues, S-nitrosothiols (RSNOs) are generated by the nitric oxide (NO.)-dependent S-nit... more In human tissues, S-nitrosothiols (RSNOs) are generated by the nitric oxide (NO.)-dependent S-nitrosation of thiol-containing species. Here, a novel electron paramagnetic resonance spectrometry assay for RSNOs is described, together with its application to studies of human health and disease. The assay involves degrading RSNOs using N-methyl-d-glucamine dithiocarbamate (MGD) at high pH and spin trapping the NO. released using (MGD)2-Fe2+. Because dietary nitrate might contribute to tissue RSNOs, the assay was used to monitor the effect of Na15NO3 ingestion on plasma and gastric juice RSNOs in healthy human volunteers. Na15NO3 ingestion (2 mmol) increased gastric RS15NO concentrations (p<0.01), but there was no significant effect on plasma RS15NO concentrations. Having established that dietary nitrate was not a confounding factor, we applied the RSNO assay to matched plasma and knee-joint synovial fluid (SF) from rheumatoid arthritis (RA) patients, with healthy subjects as controls. Clinical markers of RA inflammatory disease activity were quantified, as were plasma and SF NO2- and NO3-. Median RSNO concentrations were 0 (interquartile range 68) nM, 109 (282) nM, and 309 (470) nM in normal plasma, RA plasma, and SF, respectively. The median RSNO concentration was significantly elevated in RA SF compared with RA plasma (p<0.05) and in RA plasma compared with normal plasma (p<0.05). SF RSNO concentrations correlated positively with SF neutrophil counts (rs=0.55,…

Research paper thumbnail of Lipid Peroxidation-Dependent Chemiluminescence from the Cyclization of Alkylperoxyl Radicals to Dioxetane Radical Intermediates

Chemical Research in Toxicology, 1997

This work reveals a novel mechanism for triplet carbonyl formation (and hence chemiluminescence) ... more This work reveals a novel mechanism for triplet carbonyl formation (and hence chemiluminescence) during lipid peroxidation, whose chemiluminescence has been attributed to both triplet carbonyls and singlet oxygen. As a model for polyunsaturated fatty acid hydroperoxides, we have synthesized 3-hydroperoxy-2,3-dimethyl-1-butene by photooxygenation of tetramethylethylene. One-electron oxidation of this hydroperoxide with heme proteins and peroxynitrite to the corresponding alkylperoxyl radical results in chemiluminescence, both direct and 9,10-dibromoanthracene-2-sulfonate-sensitized, the latter attributed to the formation of triplet acetone. It is postulated that triplet acetone results from the cyclization of the alkylperoxyl radical to a dioxetane radical intermediate followed by its thermolysis. This is supported by EPR spin-trapping experiments in which discrimination between carbon-centered radicals derived from the alkyloxyl and alkylperoxyl radicals is achieved through the use of one-electron oxidants and reductants, e.g., FeII- and TiIII.

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Confinement-induced quorum sensing of individual Staphylococcus aureus bacteria

Nature Chemical Biology, 2010

Research paper thumbnail of A Proof of Concept Study to Detect Urease Producing Bacteria in Lungs Using Aerosolized13C-Urea

Pediatric Allergy, Immunology, and Pulmonology, 2016

This is a "proof of concept" study to determine whether inhalation of (13)C-ure... more This is a "proof of concept" study to determine whether inhalation of (13)C-urea can be safely used to detect the presence of urease producing bacteria in the airways of patients with cystic fibrosis (CF) by detecting (13)CO2 in breath. This was a prospective, 2-part, open label, single-center, single-arm, single-administration, dose-escalation investigational device exemption trial. First, the safety of 20 and 50 mg inhaled (13)C-urea was evaluated in 6 healthy adult participants. Then, 3 adult CF participants colonized with Pseudomonas aeruginosa were enrolled for each dose of inhaled (13)C-urea. The safety of inhaled (13)C-urea was assessed by spirometry and physical examination. (13)C-urea was administered using a jet nebulizer, followed by serial spirometry (10 min and 30 min post inhalation) and collection of exhaled breath at 5, 10, and 15 min post inhalation. There was no clinical significant change in any of the spirometry values compared to baseline in healthy participants and CF patients. Mean of (13)CO2/(12)CO2 delta over baseline (DOB) values in CF participants at 5, 10, and 15 min post inhalation was as follows: 20 mg dose 4‰ (2.2‰-4.9‰), 1‰ (1.0‰-1.4‰), and 1‰ (0.4‰-1.5‰); 50 mg dose: 10‰ (6.2‰-14.5‰), 3‰ (2.1‰-4.3‰), and 1.5‰ (0.6‰-2.3‰). Inhaled (13)C-urea for detection of urease producing bacteria was safe, and preliminary data suggest that (13)CO2/(12)CO2 DOB values may be higher in CF patients with P. aeruginosa at 5-10 min after inhalation of (13)C-urea. A future direction is to investigate use of inhaled (13)C-urea in young children who have difficulty producing sputum for culturing.

Research paper thumbnail of System and Methods of Melanoma Prevention

Research paper thumbnail of Methods of Using Isoniazid for the Diagnosis of Lung Infections

Research paper thumbnail of Firefly Flashing is Controlled by Gating Oxygen to Light-Emitting Cells

The Journal of Experimental Biology, Aug 15, 2001

Research paper thumbnail of AMPK is activated during lysosomal damage via a galectin-ubiquitin signal transduction system

Autophagy, 2020

Lysosomal damage activates AMPK, a regulator of macroautophagy/autophagy and metabolism, and elic... more Lysosomal damage activates AMPK, a regulator of macroautophagy/autophagy and metabolism, and elicits a strong ubiquitination response. Here we show that the cytosolic lectin LGALS9 detects lysosomal membrane breach by binding to lumenal glycoepitopes, and directs both the ubiquitination response and AMPK activation. Proteomic analyses have revealed increased LGALS9 association with lysosomes, and concomitant changes in LGALS9 interactions with its newly identified partners that control ubiquitination-deubiquitination processes. An LGALS9-inetractor, deubiquitinase USP9X, dissociates from damaged lysosomes upon recognition of lumenal glycans by LGALS9. USP9X's departure from lysosomes promotes K63 ubiquitination and stimulation of MAP3K7/TAK1, an upstream kinase and activator of AMPK hitherto orphaned for a precise physiological function. Ubiquitin-activated MAP3K7/TAK1 controls AMPK specifically during lysosomal injury, caused by a spectrum of membrane-damaging or -permeabilizing agents, including silica crystals, the intracellular pathogen Mycobacterium tuberculosis, TNFSF10/TRAIL signaling, and the anti-diabetes drugs metformin. The LGALS9-ubiquitin system activating AMPK represents a novel signal transduction system contributing to various physiological outputs that are under the control of AMPK, including autophagy, MTOR, lysosomal maintenance and biogenesis, immunity, defense against microbes, and metabolic reprograming.

Research paper thumbnail of What are the challenges in commercial non-tuberculous mycobacteria (NTM) drug discovery and how should we move forward?

Expert Opinion on Drug Discovery, 2019

Research paper thumbnail of Potential for breath test diagnosis of urease positive pathogens in lung infections

Journal of Breath Research, 2019

Research paper thumbnail of Stable isotope biomarker breath tests for human metabolic and infectious diseases: a review of recent patent literature

Expert opinion on therapeutic patents, 2016

Stable isotope breath tests can rapidly and quantitatively report metabolic phenotypes and diseas... more Stable isotope breath tests can rapidly and quantitatively report metabolic phenotypes and disease in both humans and microbes in situ. The labelled compound is administered and acted upon by human or microbial metabolism, producing a labelled gas that is detected in exhaled breath. Areas covered: This review details the unique advantages (and disadvantages) of phenotypic stable isotope based breath tests. A review of recent US patent applications and prosecutions since 2010 is conducted. Finally, current clinical trials, product pipelines and approved products are discussed. Expert opinion: Stable isotope breath tests offer new approaches for rapid and minimally invasive detection and study of metabolic phenotypes, both human and microbial. The patent literature has developed considerably in the last 6 years, with over 30 patent applications made. Rates of issuance remain high, although rejections citing 35 U.S.C. §101(subject matter eligibility), §102 (novelty), §103 (obviousness)...

Research paper thumbnail of Ambroxol Induces Autophagy and Potentiates Rifampin Antimycobacterial Activity

Antimicrobial agents and chemotherapy, 2018

Host-directed therapy in tuberculosis is a potential adjunct to antibiotic chemotherapy directed ... more Host-directed therapy in tuberculosis is a potential adjunct to antibiotic chemotherapy directed at Ambroxol, a lead compound, emerged from a screen for autophagy-inducing drugs. At clinically relevant doses, ambroxol induced autophagy and and promoted mycobacterial killing in macrophages. Ambroxol also potentiated rifampin activity in a murine tuberculosis model.

Research paper thumbnail of Deuterated drugs; updates and obviousness analysis

Expert Opinion on Therapeutic Patents, 2017

Research paper thumbnail of Normobaric Hyperoxia Reduces Blood Occludin Fragments in Rats and Patients With Acute Ischemic Stroke

Stroke, 2017

Background and Purpose— Damage of the blood–brain barrier (BBB) increases the incidence of neurov... more Background and Purpose— Damage of the blood–brain barrier (BBB) increases the incidence of neurovascular complications, especially for cerebral hemorrhage after tPA (tissue-type plasminogen activator) therapy. Currently, there is no effective method to evaluate the extent of BBB damage to guide tPA use. Herein, we investigated whether blood levels of tight junction proteins could serve as biomarker of BBB damages in acute ischemic stroke (AIS) in both rats and patients. We examined whether this biomarker could reflect the extent of BBB permeability during cerebral ischemia/reperfusion and the effects of normobaric hyperoxia (NBO) on BBB damage. Methods— Rats were exposed to NBO (100% O 2 ) or normoxia (21% O 2 ) during middle cerebral artery occlusion. BBB permeability was determined. Occludin and claudin-5 in blood and cerebromicrovessels were measured. Patients with AIS were assigned to oxygen therapy or room air for 4 hours, and blood occludin and claudin-5 were measured at diffe...

Research paper thumbnail of Analysis of P. aeruginosa infection in patients

Research paper thumbnail of Use of a phosphorylated spin trap to discriminate between the hydroxyl radical and other oxidising species

Journal of the Chemical Society, Perkin Transactions 2, 1998

Page 1. J. Chem. Soc., Perkin Trans. 2, 1998 1715 Use of a phosphorylated spin trap to discrimina... more Page 1. J. Chem. Soc., Perkin Trans. 2, 1998 1715 Use of a phosphorylated spin trap to discriminate between the hydroxyl radical and other oxidising species Jean-Louis Clément,b Bruce C. Gilbert,*,a Win F. Ho,a Natalie D. Jackson ...

Research paper thumbnail of Direct Visualization of Mouse Brain Oxygen Distribution by Electron Paramagnetic Resonance Imaging: Application to Focal Cerebral Ischemia

Journal of Cerebral Blood Flow & Metabolism, 2009

Electron paramagnetic resonance imaging (EPRI) is a new modality for visualizing O2 distribution ... more Electron paramagnetic resonance imaging (EPRI) is a new modality for visualizing O2 distribution in tissues, such as the brain after stroke or after administration of drugs of abuse. We have recently shown that 3-acetoxymethoxycarbonyl-2,2,5,5-tetramethyl-1-pyrrolidinyloxyl [1] is a pro-imaging agent that can cross the blood–brain barrier. After hydrolysis by esterases, the anion of 3-carboxy-2,2,5,5-tetramethyl-1-tetramethyl-1-pyrrolidinyloxyl [2] is trapped in brain tissue. In this study, we investigated the feasibility of using this to map the changes of O2 concentration in mouse brain after focal ischemia. The decrease in tissue O2 concentration in the ischemic region of mouse brain was clearly visualized by EPRI. The hypoxic zone mapped by EPRI was spatially well correlated with the infarction area in the brain imaged by diffusion-weighted magnetic resonance imaging (MRI). Finally, we observed a decrease in the size of the hypoxic region when the mouse breathed higher levels of...

Research paper thumbnail of Measurement of S-nitrosothiols in extracellular fluids from healthy human volunteers and rheumatoid arthritis patients, using electron paramagnetic resonance spectrometry

Free Radical Biology and Medicine, 2005

In human tissues, S-nitrosothiols (RSNOs) are generated by the nitric oxide (NO.)-dependent S-nit... more In human tissues, S-nitrosothiols (RSNOs) are generated by the nitric oxide (NO.)-dependent S-nitrosation of thiol-containing species. Here, a novel electron paramagnetic resonance spectrometry assay for RSNOs is described, together with its application to studies of human health and disease. The assay involves degrading RSNOs using N-methyl-d-glucamine dithiocarbamate (MGD) at high pH and spin trapping the NO. released using (MGD)2-Fe2+. Because dietary nitrate might contribute to tissue RSNOs, the assay was used to monitor the effect of Na15NO3 ingestion on plasma and gastric juice RSNOs in healthy human volunteers. Na15NO3 ingestion (2 mmol) increased gastric RS15NO concentrations (p<0.01), but there was no significant effect on plasma RS15NO concentrations. Having established that dietary nitrate was not a confounding factor, we applied the RSNO assay to matched plasma and knee-joint synovial fluid (SF) from rheumatoid arthritis (RA) patients, with healthy subjects as controls. Clinical markers of RA inflammatory disease activity were quantified, as were plasma and SF NO2- and NO3-. Median RSNO concentrations were 0 (interquartile range 68) nM, 109 (282) nM, and 309 (470) nM in normal plasma, RA plasma, and SF, respectively. The median RSNO concentration was significantly elevated in RA SF compared with RA plasma (p<0.05) and in RA plasma compared with normal plasma (p<0.05). SF RSNO concentrations correlated positively with SF neutrophil counts (rs=0.55,…

Research paper thumbnail of Lipid Peroxidation-Dependent Chemiluminescence from the Cyclization of Alkylperoxyl Radicals to Dioxetane Radical Intermediates

Chemical Research in Toxicology, 1997

This work reveals a novel mechanism for triplet carbonyl formation (and hence chemiluminescence) ... more This work reveals a novel mechanism for triplet carbonyl formation (and hence chemiluminescence) during lipid peroxidation, whose chemiluminescence has been attributed to both triplet carbonyls and singlet oxygen. As a model for polyunsaturated fatty acid hydroperoxides, we have synthesized 3-hydroperoxy-2,3-dimethyl-1-butene by photooxygenation of tetramethylethylene. One-electron oxidation of this hydroperoxide with heme proteins and peroxynitrite to the corresponding alkylperoxyl radical results in chemiluminescence, both direct and 9,10-dibromoanthracene-2-sulfonate-sensitized, the latter attributed to the formation of triplet acetone. It is postulated that triplet acetone results from the cyclization of the alkylperoxyl radical to a dioxetane radical intermediate followed by its thermolysis. This is supported by EPR spin-trapping experiments in which discrimination between carbon-centered radicals derived from the alkyloxyl and alkylperoxyl radicals is achieved through the use of one-electron oxidants and reductants, e.g., FeII- and TiIII.

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Spray-Dried Multiscale Nano-biocomposites Containing Living Cells

ACS nano, Jan 17, 2015

Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables ap... more Three-dimensional encapsulation of cells within nanostructured silica gels or matrices enables applications as diverse as biosensors, microbial fuel cells, artificial organs, and vaccines; it also allows the study of individual cell behaviors. Recent progress has improved the performance and flexibility of cellular encapsulation, yet there remains a need for robust scalable processes. Here, we report a spray-drying process enabling the large-scale production of functional nano-biocomposites (NBCs) containing living cells within ordered 3D lipid-silica nanostructures. The spray-drying process is demonstrated to work with multiple cell types and results in dry powders exhibiting a unique combination of properties including highly ordered 3D nanostructure, extended lipid fluidity, tunable macromorphologies and aerodynamic diameters, and unexpectedly high physical strength. Nanoindentation of the encasing nanostructure revealed a Young's modulus and hardness of 13 and 1.4 GPa, respe...

Research paper thumbnail of Confinement-induced quorum sensing of individual Staphylococcus aureus bacteria

Nature Chemical Biology, 2010

Research paper thumbnail of A Proof of Concept Study to Detect Urease Producing Bacteria in Lungs Using Aerosolized13C-Urea

Pediatric Allergy, Immunology, and Pulmonology, 2016

This is a "proof of concept" study to determine whether inhalation of (13)C-ure... more This is a "proof of concept" study to determine whether inhalation of (13)C-urea can be safely used to detect the presence of urease producing bacteria in the airways of patients with cystic fibrosis (CF) by detecting (13)CO2 in breath. This was a prospective, 2-part, open label, single-center, single-arm, single-administration, dose-escalation investigational device exemption trial. First, the safety of 20 and 50 mg inhaled (13)C-urea was evaluated in 6 healthy adult participants. Then, 3 adult CF participants colonized with Pseudomonas aeruginosa were enrolled for each dose of inhaled (13)C-urea. The safety of inhaled (13)C-urea was assessed by spirometry and physical examination. (13)C-urea was administered using a jet nebulizer, followed by serial spirometry (10 min and 30 min post inhalation) and collection of exhaled breath at 5, 10, and 15 min post inhalation. There was no clinical significant change in any of the spirometry values compared to baseline in healthy participants and CF patients. Mean of (13)CO2/(12)CO2 delta over baseline (DOB) values in CF participants at 5, 10, and 15 min post inhalation was as follows: 20 mg dose 4‰ (2.2‰-4.9‰), 1‰ (1.0‰-1.4‰), and 1‰ (0.4‰-1.5‰); 50 mg dose: 10‰ (6.2‰-14.5‰), 3‰ (2.1‰-4.3‰), and 1.5‰ (0.6‰-2.3‰). Inhaled (13)C-urea for detection of urease producing bacteria was safe, and preliminary data suggest that (13)CO2/(12)CO2 DOB values may be higher in CF patients with P. aeruginosa at 5-10 min after inhalation of (13)C-urea. A future direction is to investigate use of inhaled (13)C-urea in young children who have difficulty producing sputum for culturing.

Research paper thumbnail of System and Methods of Melanoma Prevention

Research paper thumbnail of Methods of Using Isoniazid for the Diagnosis of Lung Infections

Research paper thumbnail of Firefly Flashing is Controlled by Gating Oxygen to Light-Emitting Cells

The Journal of Experimental Biology, Aug 15, 2001