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Papers by Kevin D Hyde

Research paper thumbnail of Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Current Research in Environmental & Applied Mycology, 2013

Research paper thumbnail of Families of Dothideomycetes - Springer

Research paper thumbnail of The need for re-inventory of Thai phytopathogens

Research paper thumbnail of Endophytic fungi from Calamus kerrianus and Wallichia caryotoides (Arecaceae) at Doi Suthep-Pui National Park, Thailand

Research paper thumbnail of Submersisphaeria palmae sp. nov. with a key to species, and notes on Helicoubisia

Research paper thumbnail of Colletotrichum—names in current use

Research paper thumbnail of A polyphasic approach for studying Colletotrichum

Research paper thumbnail of Biodiversity of Lignicolous Freshwater Hyphomycetes from China and Thailand and Description of Sixteen Species

Journal of Fungi, 2021

Freshwater hyphomycetes are a highly diverse group of fungi with a worldwide distribution and hav... more Freshwater hyphomycetes are a highly diverse group of fungi with a worldwide distribution and have been mostly reported from tropical and subtropical regions. During investigations of freshwater fungi from the Greater Mekong subregion in China and Thailand, sixteen freshwater hyphomycetes (three of them belong to the class Dothideomycetes while thirteen belong to the class Sordariomycetes) were collected. Based on morphology and multi-gene phylogenetic analyses, Neospadicoides thailandica, Pseudodactylaria aquatica, Sporidesmium nujiangense, Tetraploa thailandica, Vamsapriyaaquatica and Wongia fusiformis are described as new species; Aquapteridospora bambusinum is proposed as a new combination; Acrodictys liputii, Chloridium gonytrichii, Pseudoberkleasmium chiangmaiense, Pleomonodictys capensis, Sporidesmium aturbinatum and Vamsapriya indica are reported as new country records; and Sporidesmium tropicale, Sporoschisma chiangraiense and Sporoschisma longicatenatum are introduced as t...

Research paper thumbnail of Recommendations for competing sexual-asexually typified generic names in Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales)

Research paper thumbnail of Intergeneric relationships within Magnaporthaceae and its phylogenetic placement based on rDNA sequence analyses

Research paper thumbnail of Recommended names for pleomorphic genera in Dothideomycetes

Research paper thumbnail of Pam et al. 2007 Endophytes- Microbial Ecology

Research paper thumbnail of Towards a natural classification and backbone tree for Pleosporaceae

Research paper thumbnail of Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

Research paper thumbnail of Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Database : the journal of biological databases and curation, 2014

DNA phylogenetic comparisons have shown that morphology-based species recognition often underesti... more DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequenc...

Research paper thumbnail of Improving ITS sequence data for identification of plant pathogenic fungi

Research paper thumbnail of Towards a natural classification of Dothideomycetes: The genera Dermatodothella, Dothideopsella, Grandigallia, Hysteropeltella and Gloeodiscus (Dothideomycetes incertae sedis)

Phytotaxa, 2013

One-hundred and sixteen genera are listed as incertae sedis in the class Dothideomycetes. This is... more One-hundred and sixteen genera are listed as incertae sedis in the class Dothideomycetes. This is a first of a series of papers in which we re-examine the herbarium types of these genera, which are generally poorly known. By examining the generic types we can suggest higher level placements, but more importantly we illustrate the taxa so that they are better understood. In this way the taxa can be recollected, sequenced and placed in a natural taxonomic framework in the Ascomycota. In this study we re-examined the genera Dermatodothella, Dothideopsella, Gloeodiscus, Grandigallia and Hysteropeltella. We re-describe and illustrate the type species of these genera and discuss their placements using modern concepts. Dermatodothella is placed in Polystomellaceae, Dothideopsella in Phaeosphaeriaceae, Grandigallia in Shiraiaceae and Hysteropeltella in Schizothyriaceae, while Gloeodiscus is retained in Dothideomycetes incertae sedis. Fresh collections of these genera are needed for further ...

Research paper thumbnail of Three New Species of Pyricularia Are Isolated as Zingiberaceous Endophytes from Thailand

Research paper thumbnail of A Phylogenetic Evaluation of Whether Endophytes Become Saprotrophs at Host Senescence

Research paper thumbnail of Phyllosticta—an overview of current status of species recognition

Research paper thumbnail of Incorporating molecular data in fungal systematics: a guide for aspiring researchers

Current Research in Environmental & Applied Mycology, 2013

Research paper thumbnail of Families of Dothideomycetes - Springer

Research paper thumbnail of The need for re-inventory of Thai phytopathogens

Research paper thumbnail of Endophytic fungi from Calamus kerrianus and Wallichia caryotoides (Arecaceae) at Doi Suthep-Pui National Park, Thailand

Research paper thumbnail of Submersisphaeria palmae sp. nov. with a key to species, and notes on Helicoubisia

Research paper thumbnail of Colletotrichum—names in current use

Research paper thumbnail of A polyphasic approach for studying Colletotrichum

Research paper thumbnail of Biodiversity of Lignicolous Freshwater Hyphomycetes from China and Thailand and Description of Sixteen Species

Journal of Fungi, 2021

Freshwater hyphomycetes are a highly diverse group of fungi with a worldwide distribution and hav... more Freshwater hyphomycetes are a highly diverse group of fungi with a worldwide distribution and have been mostly reported from tropical and subtropical regions. During investigations of freshwater fungi from the Greater Mekong subregion in China and Thailand, sixteen freshwater hyphomycetes (three of them belong to the class Dothideomycetes while thirteen belong to the class Sordariomycetes) were collected. Based on morphology and multi-gene phylogenetic analyses, Neospadicoides thailandica, Pseudodactylaria aquatica, Sporidesmium nujiangense, Tetraploa thailandica, Vamsapriyaaquatica and Wongia fusiformis are described as new species; Aquapteridospora bambusinum is proposed as a new combination; Acrodictys liputii, Chloridium gonytrichii, Pseudoberkleasmium chiangmaiense, Pleomonodictys capensis, Sporidesmium aturbinatum and Vamsapriya indica are reported as new country records; and Sporidesmium tropicale, Sporoschisma chiangraiense and Sporoschisma longicatenatum are introduced as t...

Research paper thumbnail of Recommendations for competing sexual-asexually typified generic names in Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales)

Research paper thumbnail of Intergeneric relationships within Magnaporthaceae and its phylogenetic placement based on rDNA sequence analyses

Research paper thumbnail of Recommended names for pleomorphic genera in Dothideomycetes

Research paper thumbnail of Pam et al. 2007 Endophytes- Microbial Ecology

Research paper thumbnail of Towards a natural classification and backbone tree for Pleosporaceae

Research paper thumbnail of Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names

Research paper thumbnail of Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Database : the journal of biological databases and curation, 2014

DNA phylogenetic comparisons have shown that morphology-based species recognition often underesti... more DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequenc...

Research paper thumbnail of Improving ITS sequence data for identification of plant pathogenic fungi

Research paper thumbnail of Towards a natural classification of Dothideomycetes: The genera Dermatodothella, Dothideopsella, Grandigallia, Hysteropeltella and Gloeodiscus (Dothideomycetes incertae sedis)

Phytotaxa, 2013

One-hundred and sixteen genera are listed as incertae sedis in the class Dothideomycetes. This is... more One-hundred and sixteen genera are listed as incertae sedis in the class Dothideomycetes. This is a first of a series of papers in which we re-examine the herbarium types of these genera, which are generally poorly known. By examining the generic types we can suggest higher level placements, but more importantly we illustrate the taxa so that they are better understood. In this way the taxa can be recollected, sequenced and placed in a natural taxonomic framework in the Ascomycota. In this study we re-examined the genera Dermatodothella, Dothideopsella, Gloeodiscus, Grandigallia and Hysteropeltella. We re-describe and illustrate the type species of these genera and discuss their placements using modern concepts. Dermatodothella is placed in Polystomellaceae, Dothideopsella in Phaeosphaeriaceae, Grandigallia in Shiraiaceae and Hysteropeltella in Schizothyriaceae, while Gloeodiscus is retained in Dothideomycetes incertae sedis. Fresh collections of these genera are needed for further ...

Research paper thumbnail of Three New Species of Pyricularia Are Isolated as Zingiberaceous Endophytes from Thailand

Research paper thumbnail of A Phylogenetic Evaluation of Whether Endophytes Become Saprotrophs at Host Senescence

Research paper thumbnail of Phyllosticta—an overview of current status of species recognition

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