Ibrahim Eldaghayes - Academia.edu (original) (raw)

Papers by Ibrahim Eldaghayes

Journal of world's poultry research, Jun 25, 2024

The Libyan coast has various types of wetlands that are passed by many migratory birds throughout... more The Libyan coast has various types of wetlands that are passed by many migratory birds throughout the year, however, studies on bacterial isolation from these birds in Lybia are scarce. The present study aimed to isolate enteropathogenic bacterial species from the seagulls that migrated to the Libyan coast as well as identification of the antibiotics that are resistant to these bacteria. A total of 50 fresh fecal samples were collected from slender-billed gulls in January 2023 at Farwa Island near the city of Zuwara, in Western Libya. Bacteria were isolated by conventional culturing method, identified using the Enterosystem 18R, and antibiotic susceptibility tests were conducted on the isolated bacteria. The results revealed the isolation of 46 bacteria, but only 32 of them were identified using biochemical tests. These identified bacteria belong to six species of Enterobacteriacae, namely Citrobacter (C.) freundii, Pantoea (P.) agglomerans, Escherichia (E.) coli, Enterobacter (En.) cloacae, Serratia liquifaciens, and Proteus mirabilis, with percentages of 53.125%, 31.25%, 6.25%, 3.125%, 3.125%, and 3.125%, respectively. All isolated bacteria were 100% sensitive to gentamicin (10 µg) and ciprofloxacin (5 µg). The highest resistance result was observed against the antibiotic cefoxitin (30 µg), with both C. freundii (5 samples) and P. agglomerans (4 samples). Resistance was observed in 5 samples of C. freundii and 4 samples of P. agglomerans out of 11 samples. Resistance to antibiotics, such as azithromycin (15 µg), ceftriaxone (30 µg), and ampicillin (10 µg), was also noted in a few isolates. The results indicated that C. freundii was the most antibiotic-resistant bacterial species isolated in this study. The highest multiple antibiotic resistance index was demonstrated by bacteria C. freundii, P. agglomerans, and En. cloacae, with a value of 0.33 for each of them. In conclusion, slender-billed gulls carry multi-drug-resistant bacteria. The study recommends the implementation of a national program to survey antibiotic-resistant bacteria, determine their prevalence, and assess the presence of antibiotic residues in animal-derived food. Furthermore, the present study advises expanding scientific studies on risk analysis, and antibiotic alternatives in migratory birds.

Veterinary world/Veterinary World, May 1, 2024

Background and Aim: Klebsiella pneumoniae is one of the most common causes of clinical and asympt... more Background and Aim: Klebsiella pneumoniae is one of the most common causes of clinical and asymptomatic mastitis in dairy cattle, as well as in milk and dairy products that affect milk quality. Mastitis caused by K. pneumoniae is even more serious due to its poor response to antibiotic therapy. The aim of this study was to detect and identify the presence of K. pneumoniae in milk and dairy products produced in Libya. Materials and Methods: A total of 234 samples were randomly collected from various locations in Libya. Samples were examined for the presence of K. pneumoniae using conventional cultural techniques, including cultivation in violet red bile agar plus 4-methylumbelliferyl-ß-D-glucuronide broth and CHROM agar, followed by polymerase chain reaction identification and partial sequencing of 16S rRNA. Results: Of the 234 samples of milk and dairy products collected, 16 (6.8%) isolates revealed mucoid colonies on agar media that were phenotypically suggested to be K. pneumoniae. Identification of isolates was confirmed using molecular techniques (16S rRNA). Among the examined samples, K. pneumoniae was recovered from camel's milk, raw cow's milk, raw fermented milk, Maasora cheese, Ricotta cheese, soft cheese, full cream milk powder, milk powder infant formula, cereal baby food, and growing-up formula. Antibiotic susceptibility testing was performed on 12 of the 16 K. pneumoniae isolates, and the results showed that K. pneumoniae isolates were resistant to more than eight antibiotics; interestingly, two isolates showed metallo-beta-lactamase (MBL) production. Conclusion: K. pneumoniae is considered a risk to human health because many of these products do not comply with the microbiological criteria of international and/or Libyan standards. This study emphasized the relationship between K. pneumoniae and raw milk, cheese, milk powder, and infant milk retailed in Libya. There is a need to take the necessary measures to ensure effective hygiene practices during production in dairy factories, handling, and distribution on the market, in particular at a small local production scale.

Vaccines, Nov 13, 2023

This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY

This study aimed to isolate, identify enteric bacterial species from the migratory seagulls migra... more This study aimed to isolate, identify enteric bacterial species from the migratory seagulls migrated to Libyan cost and to assess the antibiotic resistance of these bacteria. A total of 50 fecal samples were collected from slender-billed gulls in January, 2023 at Farwa Island near the city of Zwara. Bacteria were isolated by conventional culturing method, identified by using the Enterosystem 18R, and antibiotic susceptibility testing was conducted on the isolated bacteria. Only 32 of 46 bacteria were identified using biochemical tests. These identified bacteria belong to six species of Enterobacteriacae namely Citrobacter freundii, Pantoea agglomerans, E. coli, Enterobacter cloacae, Serratia liquifaciens, and Proteus mirabilis, with percentages of (17) 53.125%, (10) 31.25%, (2) 6.25%, (1) 3.125%, (1) 3.125%, and (1) 3.125%, respectively. All isolated bacterial species in this study were 100% sensitive to gentamicin and ciprofloxacin. The highest resistance rate was observed against ...

Journal of Microbiology and Infectious Diseases

Background: There is a scarcity of data on thyroid function abnormality in coronavirus disease 20... more Background: There is a scarcity of data on thyroid function abnormality in coronavirus disease 2019 (COVID-19) outpatients in the world literature since previous studies were done on admitted patients. Aim: The objective of this study was to assess thyroid function tests (TFT) in Libyan outpatients with COVID-19 as well as the possible association between them and some routine hematological, inflammatory and biochemical markers. Methods: Laboratory results were retrospectively reviewed for a total number of 246 patients, where 214 patients with laboratory-confirmed COVID-19 and 32 non-COVID-19 patients were included in the study as a control group. The majority of the patients were females 179 (72.8%) and age range between 18 and 88 years old. They were registered in the outpatient department of COVID-19 at Zaweit-Dahmany Polyclinic in Tripoli, Libya between May and October 2021. Serum levels of thyroid-stimulating hormone (TSH), thyroid hormones (THs) (triiodothyronine (T3), thyrox...

International Journal of Infectious Diseases

Open Veterinary Journal

Background: Libyan wetlands are diverse; the coastline of Libya in particular has different kinds... more Background: Libyan wetlands are diverse; the coastline of Libya in particular has different kinds of wetlands such as salt marshes, bays, lakes, lagoons and islands. These varieties in habitats provide good shelters and foraging sites for migratory birds during their journeys between Eurasia and Africa. Since the beginning of the Libyan winter census of waterbirds (Libya IWC) in 2005 which continued regularly until 2012, it had relatively the same performance in the number of covered sites. Since 2013, due to the security situation that Libya has experienced as a result of wars and conflict which negatively affected the quality of the IWC in Libya, the number of sites has dramatically decreased, reaching only 6 sites during the middle of the previous decade. Aim: The IWC 2022 aimed to counting the birds along the Libyan coast from January 10 to 29. Methods: The census activities were conducted from the dawn to dusk along the period of the study, by using high quality Telescopes, bin...

Open veterinary journal, 2023

Background: Cronobacter sspecies are the most significant foodborne pathogen in infant milk formu... more Background: Cronobacter sspecies are the most significant foodborne pathogen in infant milk formula (IMF). These pathogens have been incriminated in severe forms of neonatal meningitis, sepsis, and necrotizing enterocolitis with a high mortality rate. Aim: This study was performed to elucidate the effect of heat stress on Cronobacter spp. (C. sakazakii and C. pulveris) in reconstituted IMF (RIMF). Methods: The reconstituted formula was inoculated with five C. sakazakii isolates and four C. pulveris isolates separately. The nine isolates of Cronobacter spp. were heated in RIMF at 48°C, 52°C, 56°C, 60°C, 64°C, and 66°C. The D-and z-values were determined by using linear regression analysis. Results: The D˗values of all isolates of C.

Innovations in Microbiology and Biotechnology Vol. 5

This study was focused mainly on the third of these components to measure the level of NSP antibo... more This study was focused mainly on the third of these components to measure the level of NSP antibodies as indicator of past or current FMDV infection, irrespective of the vaccination status. Footand-mouth disease (FMD) outbreaks have been sporadic in Libya for nearly fifty years. A countrywide serosurvey was conducted in the spring of 2013 to assess the extent of FMD virus circulation and identify FMD virus serotypes in the country. A total of 4221 sera were collected, comprising samples from large ruminants (LR; samples from 357 farms) and small ruminants (SR; samples from 141 farms). FMD sero-prevalence of NSP antibodies determined by ELISA were 19.0% (271/1428) with 95% CI (16.9-21.0) and 13.5% (378/2793) with CI (12.3-14.8) for LR and SR samples, respectively. The sero-prevalence of NSP antibodies in LR was and for age group year and year, respectively , while in SR was , and for age group year, year and year, respectively. These observed NSP serologic profiles support the hypothesis of an endemic level of FMD circulation in Libya. All positive sera were tested for SP antibodies for O, A and SAT-2 FMD virus serotypes. Serotype O was the dominant circulating serotype followed by serotype A, while evidence of SAT-2 was not found. These data provide an insight into the wider epidemiology of FMD in Libya, and contribute to field and laboratory investigations that during 2013 serotype 0 (O/ME-SA/Ind-2001 lineage) was isolated from clinical samples collected from the country. To have a better understanding of livestock production, data collecting on the management system, and risk factor analysis, more study should be done. As a result of the findings, scientists can better understand the epidemiology of FMD and design scientifically sound disease control techniques to reduce the impact of FMD on Libyan livestock.

Animal Genetics, 2019

SummaryNorth Africa has a great diversity of indigenous sheep breeds whose origin is linked to it... more SummaryNorth Africa has a great diversity of indigenous sheep breeds whose origin is linked to its environmental characteristics and to certain historical events that took place in the region. To date, few genome‐wide studies have been conducted to investigate the population structure of North African indigenous sheep. The objective of the present study was to provide a detailed assessment of the genetic structure and admixture patterns of six Maghreb sheep populations using the Illumina 50K Ovine BeadChip and comparisons with 22 global populations of sheep and mouflon. Regardless of the method of analysis used, patterns of multiple hybridization events were observed within all North African populations, leading to a heterogeneous genetic architecture that varies according to the breed. The Barbarine population showed the lowest genetic heterogeneity and major southwest Asian ancestry, providing additional support to the Asian origin of the North African fat‐tailed sheep. All other ...

Libyan Journal of Medical Sciences, 2018

Background: This study was conducted to investigate the presence of Bacillus cereus in meat, meat... more Background: This study was conducted to investigate the presence of Bacillus cereus in meat, meat products, and some seafood in Libya. Materials and Methods: One hundred and thirty-one samples were collected from different geographic localities in Libya. The samples were subjected to microbiological analysis for enumeration and isolation of B. cereus by conventional cultural, biochemical, and molecular identification using polymerase chain reaction (PCR) and partial sequencing of 16S rDNA techniques. Results: Of 131 samples, only 38 (29%) isolates were found to be B. cereus based on their cultural characteristics on Mannitol Egg-Yolk Polymyxin (MYP) medium that included 30% beef, 38.2% beef products (minced, burger, kabab, and sausage), 31.8% camel meat, and 48% chicken products (burger, sausage, kabab, and liver). However, B. cereus was not detected from mutton and seafood samples. Seventeen isolates were subjected to molecular identification using PCR and partial sequencing of 16S rDNA technique and confirmed to be B. cereus. The confirmed B. cereus strains were tested for their antibiotic sensitivity profiles and showed a high percentage of multiresistance phenotype. Conclusions: The results provide a better understanding of B. cereus isolated from food of animal origin in Libya and suggest that meat and meat products might play an important role in the spreading of B. cereus through the food chain with antimicrobial resistance characteristics.

West Nile virus (WNV) is a global important mosquito-borne Flavivirus causing West Nile disease (... more West Nile virus (WNV) is a global important mosquito-borne Flavivirus causing West Nile disease (WND). In Libya, evidence of WNV circulation has been reported in humans but never in animals. The aim of this study was to determine the seroprevalence of the WNV infection in horses and dogs in Libya. A total of 574 and 63 serum samples from horses and dogs, respectively, were collected from healthy unvaccinated animals between 2016 - 2019. A commercially available competitive ELISA (c-ELISA) kit was initially used to test the collected samples for the presence of WNV Ig-G antibodies. Positive and doubtful sera were also tested by using the more specific virus neutralization assays to confirm whether the ELISA positive results were due to WNV or Usutu virus (USUV) antibodies. The seroprevalence of WNV IgG ELISA antibodies was 13.2% (76/574) and 30.2% (19/63) in horses and dogs, respectively. Virus neutralization test (VNT) showed that 77.5% (62/80) and 89.5% (17/19) of positive and doub...

The deleterious effects of the residues of antibacterial drugs have been considered as one of the... more The deleterious effects of the residues of antibacterial drugs have been considered as one of the most serious problems in the world on the basis of their importance in both veterinary and human fields. Therefore, the present study was planned out to evaluate the residual levels of oxytetracycline in camel tissues in Tripoli area in Libya. Forty samples of slaughtered camel's tissues (10 of muscle, 10 of liver, 10 of kidney, and 10 of fat) were collected from different carcasses at different slaughter houses in Tripoli districts. The samples were homogenized, extracted and residual concentrations of oxytetracycline have been measured using liquid chromatography-Mass spectroscopy (LC-MS) technique and oxytetracycline standard. Oxytetracycline residues have been detected in 60% in muscle, 80% in liver, 90% in kidney and 70% in fat samples. The samples, although positive, yet decided acceptable as the detected levels were less than that were regulated by Codex Alimentarius Commissi...

Background: Cronobacter sakazakii is associated with illness in infants from contaminated powdere... more Background: Cronobacter sakazakii is associated with illness in infants from contaminated powdered infant formula (PIF) and it is frequently recovered from PIF factory environment. Limited information is available on contamination of other food such as dairy and meat products in Libya. Methods and findings: A total of 261 samples of milk, dairy products and coarse ground meat products were collected from different localities in Libya. Samples were examined for Cronobacter spp. with an adapted ISO /DTS 22964 cultural protocol using HiChrome™ Enterobacter sakazakii modified agar coupled with 16S rDNA partial sequencing to identify the organism. The identified isolates were biochemically characterized and tested for their ability to produce yellow pigment. Out of the 261 analyzed samples, only two beef burgers, one fermented milk “Laban”, one she-camel’s milk, two raw cow’s milk, two cereal baby food, one Maassora cheese and one ready to feed baby milk were contaminated with Cronobacte...

A total number of 432 day-old broiler chicks from Ross 308 parent stock were used in this study. ... more A total number of 432 day-old broiler chicks from Ross 308 parent stock were used in this study. These chicks were divided randomly into equal groups at 21 days of age under normal conditions and under heat stress. These birds were fed different concentrations of amino acids (Lysine, Threionine and Methionine) according to the NRC and higher than that. These birds were vaccinated according to the program provided by the Animal Health Center, and the antibodies level against Newcastle disease virus was measured. The results show that an increase of lysine has no significant effect on antibody production whereas the increases of threionine and methionine have good effect on immunity as the titer of antibodies against Newcastle disease was increased (higher for methionine under normal conditions). Moreover, heat stressed birds fed higher concentrations of threionine has no significant effect on antibody production compared to birds under normal conditions, whereas there was drop of ant...

Fowlpox virus (FPV) has been under development as a recombinant vaccine vector for 20 years. To d... more Fowlpox virus (FPV) has been under development as a recombinant vaccine vector for 20 years. To date, surprisingly, very few data exist on the persistence of fowlpox vaccine virus in chicken tissues, or the immune cells that respond to the vaccination at the site of inoculation. Although both humoral and cellular mediated immunity (CMI) play a part in overall immunity against FPV, little is known regarding the cell-mediated immune responses to FPV infection. The main aim of this study was to measure persistence of recombinant fowlpox vaccine virus in skin tissues following vaccination. The recombinant FPVs did not persist for long. Virus was detected in skin tissue after vaccination at very high concentrations 2 days post-vaccination (dpv), to a lesser degree at 4 dpv and was almost cleared from 6 dpv. We also investigated the kinetics of response of immune cells (macrophages, B cells, CD4+ and CD8+ T cells) in infiltrating the site of vaccination.

Animals

Foot-and-mouth disease (FMD) is a viral disease, widespread and highly contagious, that mainly af... more Foot-and-mouth disease (FMD) is a viral disease, widespread and highly contagious, that mainly affects cloven-hoofed domestic and wild animals. FMD can lead to high economic losses due to the reduction in animal production such as a drop in milk production, loss of body weight, and a high mortality rate in young ruminants. Sixteen samples were collected from animals showing typical clinical signs of FMD during the last FMD outbreak in Libya in 2018–2019. Flinders Technology Associates (FTA) cards impressed with blood, swabs, or vesicular epithelium samples were shipped to the WOAH FMD reference laboratory in Brescia, Italy, and tested for the detection of FMD viruses. Nucleic acids were extracted from the FTA cards, and molecular testing based on real-time RT-PCR assays was carried out, of which one was specifically designed for the detection of the FMD virus of serotype O, topotype O/East Africa-3 (O/EA-3), that was further confirmed by a sequence analysis of the VP1 gene. The phyl...