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Papers by Jose Maria Vieites

Research paper thumbnail of Retraction

Research paper thumbnail of Isolation, identification and characterisation of three novel probiotic strains (<i>Lactobacillus paracasei</i>CNCM I-4034,<i>Bifidobacterium breve</i>CNCM I-4035 and<i>Lactobacillus rhamnosus</i>CNCM I-4036) from the faeces of exclusively breast-fed infants

British Journal of Nutrition, Jan 29, 2013

Research paper thumbnail of The antioxidant effect of β-caryophyllene protects rat liver from carbon tetrachloride-induced fibrosis by inhibiting hepatic stellate cell activation

British Journal of Nutrition, May 1, 2012

Research paper thumbnail of Exogenous nucleosides accelerate differentiation of rat intestinal epithelial cells

British Journal of Nutrition, Oct 8, 2007

Research paper thumbnail of Active hexose correlated compound acts as a prebiotic and is antiinflammatory in rats with hapten-induced colitis

The Journal of nutrition, 2007

Active hexose correlated compound (AHCC) is a product prepared from the mycelium of edible Basidi... more Active hexose correlated compound (AHCC) is a product prepared from the mycelium of edible Basidiomycete fungi that contains oligosaccharides. Here we have studied the antiinflammatory effect of AHCC in the trinitrobenzenesulfonic acid (TNBS) model of colitis in rats. Rats received AHCC (100 or 500 mg/kg) daily starting 2 d before (pretreatment) colitis induction and were killed 6 d after the TNBS challenge. The status of the rats was assessed by morphological and biochemical methods. The effect of AHCC on the colonic microflora was also assessed by studying the bacteria profile in feces by standard culture techniques. AHCC administration attenuated colonic inflammation, improving rat weight, food intake, damage score, extension of necrosis, colonic weight, colonic weight-to-length ratio, myeloperoxidase and alkaline phosphatase activities, glutathione concentration, and the expression of proinflammatory cytokines and chemokines (IL-1beta, IL-1 receptor antagonist, TNF, and monocyte...

Research paper thumbnail of Characterization of human cd200 glycoprotein receptor gene located on chromosome 3q12-13

Research paper thumbnail of Metagenomics approaches in systems microbiology

Fems Microbiology Reviews, 2009

Research paper thumbnail of Interplay of metagenomics and <i>in vitro</i> compartmentalization

Microbial biotechnology, Oct 13, 2008

Research paper thumbnail of Isolation, identification and characterisation of strains with probiotic activity, from faeces of infants fed exclusively with breast milk

Research paper thumbnail of Molecular Methods to Study Complex Microbial Communities

Methods in Molecular Biology, 2010

Microbes, which constitute a major fraction of the total biomass, are the main source of biodiver... more Microbes, which constitute a major fraction of the total biomass, are the main source of biodiversity on our Planet and play an essential role in maintaining global processes, which ultimately regulate the functioning of the Biosphere. Recent emergence of &amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;quot;metagenomics&amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;quot; allows for the analysis of microbial communities without tedious cultivation efforts. Metagenomics approach is analogous to the genomics with the difference that it does not deal with the single genome from a clone or microbe cultured or characterized in laboratory, but rather with that from the entire microbial community present in an environmental sample; it is the community genome. Global understanding by metagenomics depends essentially on the possibility of isolating the entire bulk DNA and identifying the genomes, genes, and proteins more relevant to each of the environmental sample under investigation. Following on this, in this chapter, we provide an analysis of methods available to isolate environmental DNA and to establish metagenomic libraries that can further be used for extensive activity screens.

Research paper thumbnail of Retraction

Research paper thumbnail of Expression andin vivo determination of firefly luciferase as gene reporter inSaccharomyces cerevisiae

Research paper thumbnail of Exogenous nucleosides accelerate differentiation of rat intestinal epithelial cells

British Journal of Nutrition, 2007

Several studies have reported differing data on the effect of exogenous nucleosides and nucleotid... more Several studies have reported differing data on the effect of exogenous nucleosides and nucleotides on the proliferation and differentiation in various intestinal cell lines and explants. To study whether exogenous nucleosides modulate intestinal cell differentiation, IEC-6 cells were differentiated in the presence or absence of a nucleoside mixture (cytidine, uridine, guanosine and inosine, 30 μmeach), and the concentrations of nucleoside derivatives were determined by HPLC. Cell differentiation was assessed by electron microscopy, alkaline phosphatase activity andRnd3gene expression. The present results showed that uridine, guanosine and inosine were cleared from culture media (up to 32, 63 and 100 % in proliferating cells, and 31, 80 and 94 % in differentiated cells, respectively) whereas cytidine concentrations increased. Differentiation of IEC-6 cells was associated with a significant increase in intracellular nucleotide concentrations. Clearance of nucleosides correlated with ...

Research paper thumbnail of Reactome Array: Forging a Link Between Metabolome and Genome

Science, 2009

Metabolite Arrays Methods suitable for the biochemical analysis of multiple metabolic pathways in... more Metabolite Arrays Methods suitable for the biochemical analysis of multiple metabolic pathways in mixed samples are in short supply. Beloqui et al. (p. 252 ) report a method to sample the global metabolic state of an organism or mixture of organisms using an array of more than 1500 metabolites linked to a glass slide. The substrates are linked to the plate so that the reaction of an enzyme with one of the metabolites releases a fluorescent dye, which allows sensitive detection of the enzymatic activity. From a sample with small numbers of a mixture of bacteria, the authors were able to collect DNA, amplify it in a host bacterium, and measure its encoded metabolic activity with the array. Furthermore, by coating the substrates on nanoparticles with a specially designed linker, the authors could trap and purify enzymes that reacted with the immobilized substrate. The metabolite array may be useful in the characterization of environmental samples, in diagnostic procedures, and in enzym...

Research paper thumbnail of Changes in faecal microbiota of infants with cow’s milk protein allergy - a Spanish prospective case-control 6-month follow-up study

Pediatric Allergy and Immunology, 2010

Research paper thumbnail of Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres

Microbiology, 2011

Although it is well established that early infant feeding has a major influence on the establishm... more Although it is well established that early infant feeding has a major influence on the establishment of the gut microbiota, very little is understood about how the introduction of first solid food influences the colonization process. This study aimed to determine the impact of weaning on the faecal microbiota composition of infants from five European countries (Sweden, Scotland, Germany, Italy and Spain) which have different lifestyle characteristics and infant feeding practices. Faecal samples were collected from 605 infants approximately 4 weeks after the introduction of first solid foods and the results were compared with the same infants before weaning (6 weeks of age) to investigate the association with determining factors such as geographical origin, mode of delivery, previous feeding method and age of weaning. Samples were analysed by fluorescence in situ hybridization and flow cytometry using a panel of 10 rRNA targeted group- and species-specific oligonucleotide probes. The...

Research paper thumbnail of Inter-conversion of catalytic abilities in a bifunctional carboxyl/feruloyl-esterase from earthworm gut metagenome

Microbial Biotechnology, 2010

Research paper thumbnail of Interplay of metagenomics and in vitro compartmentalization

Microbial Biotechnology, 2009

Research paper thumbnail of Faecal Microbiota and Short-Chain Fatty Acid Levels in Faeces from Infants with Cow‘s Milk Protein Allergy

International Archives of Allergy and Immunology, 2011

Research paper thumbnail of Metagenomics approaches in systems microbiology

FEMS Microbiology Reviews, 2009

Research paper thumbnail of Retraction

Research paper thumbnail of Isolation, identification and characterisation of three novel probiotic strains (<i>Lactobacillus paracasei</i>CNCM I-4034,<i>Bifidobacterium breve</i>CNCM I-4035 and<i>Lactobacillus rhamnosus</i>CNCM I-4036) from the faeces of exclusively breast-fed infants

British Journal of Nutrition, Jan 29, 2013

Research paper thumbnail of The antioxidant effect of β-caryophyllene protects rat liver from carbon tetrachloride-induced fibrosis by inhibiting hepatic stellate cell activation

British Journal of Nutrition, May 1, 2012

Research paper thumbnail of Exogenous nucleosides accelerate differentiation of rat intestinal epithelial cells

British Journal of Nutrition, Oct 8, 2007

Research paper thumbnail of Active hexose correlated compound acts as a prebiotic and is antiinflammatory in rats with hapten-induced colitis

The Journal of nutrition, 2007

Active hexose correlated compound (AHCC) is a product prepared from the mycelium of edible Basidi... more Active hexose correlated compound (AHCC) is a product prepared from the mycelium of edible Basidiomycete fungi that contains oligosaccharides. Here we have studied the antiinflammatory effect of AHCC in the trinitrobenzenesulfonic acid (TNBS) model of colitis in rats. Rats received AHCC (100 or 500 mg/kg) daily starting 2 d before (pretreatment) colitis induction and were killed 6 d after the TNBS challenge. The status of the rats was assessed by morphological and biochemical methods. The effect of AHCC on the colonic microflora was also assessed by studying the bacteria profile in feces by standard culture techniques. AHCC administration attenuated colonic inflammation, improving rat weight, food intake, damage score, extension of necrosis, colonic weight, colonic weight-to-length ratio, myeloperoxidase and alkaline phosphatase activities, glutathione concentration, and the expression of proinflammatory cytokines and chemokines (IL-1beta, IL-1 receptor antagonist, TNF, and monocyte...

Research paper thumbnail of Characterization of human cd200 glycoprotein receptor gene located on chromosome 3q12-13

Research paper thumbnail of Metagenomics approaches in systems microbiology

Fems Microbiology Reviews, 2009

Research paper thumbnail of Interplay of metagenomics and <i>in vitro</i> compartmentalization

Microbial biotechnology, Oct 13, 2008

Research paper thumbnail of Isolation, identification and characterisation of strains with probiotic activity, from faeces of infants fed exclusively with breast milk

Research paper thumbnail of Molecular Methods to Study Complex Microbial Communities

Methods in Molecular Biology, 2010

Microbes, which constitute a major fraction of the total biomass, are the main source of biodiver... more Microbes, which constitute a major fraction of the total biomass, are the main source of biodiversity on our Planet and play an essential role in maintaining global processes, which ultimately regulate the functioning of the Biosphere. Recent emergence of &amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;quot;metagenomics&amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;amp;quot; allows for the analysis of microbial communities without tedious cultivation efforts. Metagenomics approach is analogous to the genomics with the difference that it does not deal with the single genome from a clone or microbe cultured or characterized in laboratory, but rather with that from the entire microbial community present in an environmental sample; it is the community genome. Global understanding by metagenomics depends essentially on the possibility of isolating the entire bulk DNA and identifying the genomes, genes, and proteins more relevant to each of the environmental sample under investigation. Following on this, in this chapter, we provide an analysis of methods available to isolate environmental DNA and to establish metagenomic libraries that can further be used for extensive activity screens.

Research paper thumbnail of Retraction

Research paper thumbnail of Expression andin vivo determination of firefly luciferase as gene reporter inSaccharomyces cerevisiae

Research paper thumbnail of Exogenous nucleosides accelerate differentiation of rat intestinal epithelial cells

British Journal of Nutrition, 2007

Several studies have reported differing data on the effect of exogenous nucleosides and nucleotid... more Several studies have reported differing data on the effect of exogenous nucleosides and nucleotides on the proliferation and differentiation in various intestinal cell lines and explants. To study whether exogenous nucleosides modulate intestinal cell differentiation, IEC-6 cells were differentiated in the presence or absence of a nucleoside mixture (cytidine, uridine, guanosine and inosine, 30 μmeach), and the concentrations of nucleoside derivatives were determined by HPLC. Cell differentiation was assessed by electron microscopy, alkaline phosphatase activity andRnd3gene expression. The present results showed that uridine, guanosine and inosine were cleared from culture media (up to 32, 63 and 100 % in proliferating cells, and 31, 80 and 94 % in differentiated cells, respectively) whereas cytidine concentrations increased. Differentiation of IEC-6 cells was associated with a significant increase in intracellular nucleotide concentrations. Clearance of nucleosides correlated with ...

Research paper thumbnail of Reactome Array: Forging a Link Between Metabolome and Genome

Science, 2009

Metabolite Arrays Methods suitable for the biochemical analysis of multiple metabolic pathways in... more Metabolite Arrays Methods suitable for the biochemical analysis of multiple metabolic pathways in mixed samples are in short supply. Beloqui et al. (p. 252 ) report a method to sample the global metabolic state of an organism or mixture of organisms using an array of more than 1500 metabolites linked to a glass slide. The substrates are linked to the plate so that the reaction of an enzyme with one of the metabolites releases a fluorescent dye, which allows sensitive detection of the enzymatic activity. From a sample with small numbers of a mixture of bacteria, the authors were able to collect DNA, amplify it in a host bacterium, and measure its encoded metabolic activity with the array. Furthermore, by coating the substrates on nanoparticles with a specially designed linker, the authors could trap and purify enzymes that reacted with the immobilized substrate. The metabolite array may be useful in the characterization of environmental samples, in diagnostic procedures, and in enzym...

Research paper thumbnail of Changes in faecal microbiota of infants with cow’s milk protein allergy - a Spanish prospective case-control 6-month follow-up study

Pediatric Allergy and Immunology, 2010

Research paper thumbnail of Determinants of the human infant intestinal microbiota after the introduction of first complementary foods in infant samples from five European centres

Microbiology, 2011

Although it is well established that early infant feeding has a major influence on the establishm... more Although it is well established that early infant feeding has a major influence on the establishment of the gut microbiota, very little is understood about how the introduction of first solid food influences the colonization process. This study aimed to determine the impact of weaning on the faecal microbiota composition of infants from five European countries (Sweden, Scotland, Germany, Italy and Spain) which have different lifestyle characteristics and infant feeding practices. Faecal samples were collected from 605 infants approximately 4 weeks after the introduction of first solid foods and the results were compared with the same infants before weaning (6 weeks of age) to investigate the association with determining factors such as geographical origin, mode of delivery, previous feeding method and age of weaning. Samples were analysed by fluorescence in situ hybridization and flow cytometry using a panel of 10 rRNA targeted group- and species-specific oligonucleotide probes. The...

Research paper thumbnail of Inter-conversion of catalytic abilities in a bifunctional carboxyl/feruloyl-esterase from earthworm gut metagenome

Microbial Biotechnology, 2010

Research paper thumbnail of Interplay of metagenomics and in vitro compartmentalization

Microbial Biotechnology, 2009

Research paper thumbnail of Faecal Microbiota and Short-Chain Fatty Acid Levels in Faeces from Infants with Cow‘s Milk Protein Allergy

International Archives of Allergy and Immunology, 2011

Research paper thumbnail of Metagenomics approaches in systems microbiology

FEMS Microbiology Reviews, 2009