Richard McGarvey - Academia.edu (original) (raw)

Papers by Richard McGarvey

Biological Conservation, 2008

... beaked common dolphins (Delphinus delphis). Derek J. Hamer a , b , Corresponding Author Conta... more ... beaked common dolphins (Delphinus delphis). Derek J. Hamer a , b , Corresponding Author Contact Information , E-mail The Corresponding Author , Tim M. Ward a and Richard McGarvey a. a South Australian Research and ...

The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-p... more The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.

Journal of the Marine Biological Association of the United Kingdom, 2021

The Western Kangaroo Island Marine Park (WKIMP) was declared as part of South Australia's rep... more The Western Kangaroo Island Marine Park (WKIMP) was declared as part of South Australia's representative system of Marine Protected Areas in 2009. Sanctuary Zone 3 (SZ-3) of the WKIMP is a no-take area protected from fishing since 1 October 2014 and is located within the Northern Zone Rock Lobster Fishery (NZRLF). In February 2017, a dedicated survey was undertaken to estimate the relative abundance (catch per unit effort (CPUE), kg/potlift) and size of southern rock lobster (Jasus edwardsii) inside and outside SZ-3. Survey results were then compared with historical estimates of abundance and size obtained from commercial fishery-dependent data. Survey estimates of relative abundance of legal-size lobsters were 4.4 times greater inside SZ-3 compared with outside in 2017. Since 2014, when fishing was last permitted inside SZ-3, the relative abundance of lobsters increased by 75%. The mean size of legal-size female and male lobsters also increased by 4.1% and 12.5%, respectively. ...

Samples of 11,000 King George whiting (Sillaginodes punctata) from the South Australian commercia... more Samples of 11,000 King George whiting (Sillaginodes punctata) from the South Australian commercial and recreational catch, supplemented by research samples, were aged from otoliths. Samples were analyzed from three coastal regions and by sex. Most sampling was undertaken at fish processing plants, from which only fish longer than the legal minimum length were obtained. A left-truncated normal distribution of lengths at monthly age was therefore employed as model likelihood. Mean length-at-monthly-age was described by a generalized von Bertalanffy formula with sinusoidal seasonality. Likelihood standard deviation was modeled to vary allometrically with mean length. A range of related formulas (with 6 to 8 parameters) for seasonal mean length at age were compared. In addition to likelihood ratio tests of relative fit, model selection criteria were a minimum occurrence of high uncertainties (>20% SE), of high correlations (>0.9, >0.95, and >0.99) and of parameter estimates ...

Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The aut... more Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI internal review process, and has been formally approved for release by the Research Chief, Aquatic Sciences. Although all reasonable efforts have been made to ensure quality, SARDI does not warrant that the information in this report is free from errors or omissions. SARDI does not accept any liability for the contents of this report or for any consequences arising from its use or any reliance placed upon it. The SARDI Report Series is an Administrative Report Series which has not been reviewed outside the department and is not considered peer-reviewed literature. Material presented in these Administrative Reports may later be published in formal peer-reviewed scientific literature.

Monitoring the density of natural populations is crucial for ecosystem management decision making... more Monitoring the density of natural populations is crucial for ecosystem management decision making and natural resource management. The most widely used method to measure the population density of animal and plant species in natural habitats is to count organisms in sample plots. Yet evaluation of survey performance by different sample plot shapes, e.g. quadrats compared with transects, has been largely neglected since the 1990s and has not been undertaken using simulation. Simulating populations and surveys, we evaluated population density measurement precision for 900 cases, testing 30 sample plot survey designs in each of 30 spatially clustered populations. We varied three design options: elongation of plot shape while keeping sample area constant, systematic or random plot allocation, and sample size. Survey design performance varied markedly: elongating the plot shape always improved survey precision; allocating plots systematically sometimes did. (i) Averaged across all tested ...

ICES Journal of Marine Science

This paper reviews application of the Daily Egg Production Method (DEPM) to sardine (Sardinops sa... more This paper reviews application of the Daily Egg Production Method (DEPM) to sardine (Sardinops sagax) off southern Australia between 1995 and 2019. Coefficients of variation (CVs) of estimates of spawning biomass (SB) were reduced from 23–59% to 8–12% by: (i) estimating mean daily egg production (P0), spawning fraction (S), and sex ratio (R) from all historical data rather than annually; and (ii) combining batch fecundity (F) and female weight (W) into a single parameter, relative fecundity (F′ = F^/W). Total daily egg production was estimated most precisely from annual estimates of spawning area (A) and estimates of P0 obtained from historical data. Both S and R were estimated most precisely from historical data. Estimating W and F from historical data did not increase precision. F′ had lower CVs than both W and F, and was stable across years and a wide range of W. Findings demonstrate that A can be converted into a precise estimates of SB using estimates of P0, S, R, and F′ obtain...

The American Naturalist, Mar 1, 2018

We proposed two hypotheses to explain why food chains are longer in pelagic than terrestrial ecos... more We proposed two hypotheses to explain why food chains are longer in pelagic than terrestrial ecosystems: greater trophic efficiency of pelagic animal taxa at lower trophic levels and a higher pelagic biomass production rate at lower trophic levels because of smaller pelagic body masses. Giacomini favored the former, invoking in support the energetic equivalence hypothesis. We reply that the energetic equivalence hypothesis does not describe populations at differing trophic levels and so does not refute a significant role for body-mass dependence in explaining faster trophic transfer in pelagic ecosystems. Metabolic scaling as body mass to the exponent 1/4, widely accepted, remains important for trophic dynamic models. We suggest a likelihood method to compare the two hypotheses on the basis of models of whole-ecosystem energetics.

ICES Journal of Marine Science

Snapper (Chrysophrys auratus) in South Australia spawn over a wide range of daily times and hatch... more Snapper (Chrysophrys auratus) in South Australia spawn over a wide range of daily times and hatch in ∼1.5 d. Traditional estimates of daily egg production (i) divide sampled eggs into daily age cohorts, e.g. days 1 and 2, (ii) compute cohort ages by assuming that all spawning occurs at a fixed daily peak hour, and (iii) link the estimation of spawning egg density with egg mortality rate by regressing cohort egg densities against cohort age. We propose a method for estimating daily egg production, the number of eggs spawned per unit area per day (P0), without these assumptions. We use a range of estimates of snapper egg mortality rate obtained from prior studies to backcorrect for egg mortality to the age 0 spawning egg density for each stage of eggs individually rather than aggregating into daily cohorts. P0 is estimated as a mean of sample tow densities rather than as a regression intercept. This stage-based P0 estimator avoids errors associated with assuming a fixed daily spawning...

Marine and Coastal Fisheries

During daily fishing operations, spanner crab Ranina ranina catch rates can fluctuate substantial... more During daily fishing operations, spanner crab Ranina ranina catch rates can fluctuate substantially, but the environmental drivers responsible for these fluctuations largely remain unresolved. Earlier research suggests that spanner crab catchability increases with strengthening currents, but uncertainties surround the magnitude of the measured current speeds and, consequently, their relationship with catch rates. Here, we explore the effects of bottom currents on spanner crab catch rates in South East Queensland, Australia. Using generalized additive mixed modeling, our results indicated that strengthening current speeds increased catch rates until reaching approximately 0.15 m/s, at which point the catch rates began to gradually decline. Results from a general linear regression model also showed that between fishing periods carried out on the same day, catch rates increased or decreased concurrently with current speeds. We conclude that bottom current speed should be considered in future stock assessment models. Better understanding the processes responsible for changes in bottom current speed will enable more accurate estimates of spanner crab population densities in the Australian fishery and will benefit the economic efficiency of commercial crabbing operations. Furthermore, future studies that investigate the effects of current speed on catch rates for other crab species should consider differences in locomotory characteristics and how they may impact the foraging efficiency of crabs under different flow conditions.

New Zealand Journal of Marine and Freshwater Research

ABSTRACT The Australian Victorian Western Zone rock lobster fishery is assessed using standardise... more ABSTRACT The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.

Fisheries Research

Abstract An extended depletion model (EDM) is presented that estimates both a time-series of the ... more Abstract An extended depletion model (EDM) is presented that estimates both a time-series of the number of animals recruiting to legal size as well as start-year exploitable population size. EDM requires total catch in numbers for all months, but fits only to monthly catch rates of legal size lobsters over a restricted period during each year, aggregating catch and recruitment over the remaining months. Applied to a South Australian southern rock lobster ( Jasus edwardsii ) fishery over 1994–2014, catch rates for January, February, and March were fit under assumptions of no recruitment and equal catchability during these months of high catches. No assumptions are made about catchability during April–December. A hybrid model, EDM-CSA, combines EDM and catch-survey analysis (CSA), by additionally fitting to a recruitment index. Comparisons were made with estimates from a length-based integrated stock assessment model (LenMod). All parameter estimation was by maximum likelihood. Mean estimates of recruitment from the models differed by no more than 3% and of population size by no more than 12%. Trends in recruitment and population size were similar among models. A likelihood ratio test using EDM detected a significant increase in catchability from 2011 to 2012, which was sustained during 2012–2014, and that was corroborated by fisheries-independent survey data. Hyperstability in fishery catch-rates was also supported.

Natural Resource Modeling

ABSTRACT

Reviews in Fish Biology and Fisheries

Australia’s lobster fisheries are relatively small in volume (9500t) compared with global product... more Australia’s lobster fisheries are relatively small in volume (9500t) compared with global production (289,000t), but are the country’s most valuable in terms of both overall production and value of export (2014 Gross Value of Production of $610 million AUD). Further, they support commercial, recreational and indigenous fishers along most of the continent’s coastline. Here we review similarities and key differences between these lobster fisheries, based on biological characteristics, fishery data collection, assessment and management methods, and supply chain considerations. A diverse range of palinurid lobsters occur in Australia, but only three genera, distributed across eight different management jurisdictions, support significant fisheries. Catches of western rock lobster Panulirus cygnus dominate landings (61%), followed by southern rock lobster Jasus edwardsii, tropical lobster Panulirus ornatus and the eastern rock lobster Sagmariasus verreauxi. Large-scale environmental influences such as climate change are impacting on these fisheries in similar or different ways forcing new management and raising the need for greater resilience in current supply chains. Although these are separate fisheries, the integrated nature of the dominant Chinese export markets suggests potentially important economic and market-related interactions. Our overview highlights the critical role of continued monitoring of recruitment pulses, in combination with robust harvest strategies, to ensure that harvests respond adequately and fisheries achieve biological and economic sustainability. Approaches that also include socio-cultural considerations (triple bottom line) are important given many fisheries include indigenous Australians. Our integrated analysis of Australian lobster fisheries highlights differences and similarities with spiny lobster fisheries worldwide and lessons from opportunities, including adapting to new free trade agreements, enhancing the reputation of wild lobsters as a whole, sharing expertise, and better alignment of supply and demand.

Fisheries Assessment and Management in Data-Limited Situations

Biological Conservation, 2008

... beaked common dolphins (Delphinus delphis). Derek J. Hamer a , b , Corresponding Author Conta... more ... beaked common dolphins (Delphinus delphis). Derek J. Hamer a , b , Corresponding Author Contact Information , E-mail The Corresponding Author , Tim M. Ward a and Richard McGarvey a. a South Australian Research and ...

The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-p... more The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.

Journal of the Marine Biological Association of the United Kingdom, 2021

The Western Kangaroo Island Marine Park (WKIMP) was declared as part of South Australia's rep... more The Western Kangaroo Island Marine Park (WKIMP) was declared as part of South Australia's representative system of Marine Protected Areas in 2009. Sanctuary Zone 3 (SZ-3) of the WKIMP is a no-take area protected from fishing since 1 October 2014 and is located within the Northern Zone Rock Lobster Fishery (NZRLF). In February 2017, a dedicated survey was undertaken to estimate the relative abundance (catch per unit effort (CPUE), kg/potlift) and size of southern rock lobster (Jasus edwardsii) inside and outside SZ-3. Survey results were then compared with historical estimates of abundance and size obtained from commercial fishery-dependent data. Survey estimates of relative abundance of legal-size lobsters were 4.4 times greater inside SZ-3 compared with outside in 2017. Since 2014, when fishing was last permitted inside SZ-3, the relative abundance of lobsters increased by 75%. The mean size of legal-size female and male lobsters also increased by 4.1% and 12.5%, respectively. ...

Samples of 11,000 King George whiting (Sillaginodes punctata) from the South Australian commercia... more Samples of 11,000 King George whiting (Sillaginodes punctata) from the South Australian commercial and recreational catch, supplemented by research samples, were aged from otoliths. Samples were analyzed from three coastal regions and by sex. Most sampling was undertaken at fish processing plants, from which only fish longer than the legal minimum length were obtained. A left-truncated normal distribution of lengths at monthly age was therefore employed as model likelihood. Mean length-at-monthly-age was described by a generalized von Bertalanffy formula with sinusoidal seasonality. Likelihood standard deviation was modeled to vary allometrically with mean length. A range of related formulas (with 6 to 8 parameters) for seasonal mean length at age were compared. In addition to likelihood ratio tests of relative fit, model selection criteria were a minimum occurrence of high uncertainties (>20% SE), of high correlations (>0.9, >0.95, and >0.99) and of parameter estimates ...

Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The aut... more Telephone: (08) 8207 5400 Facsimile: (08) 8207 5406 http://www.sardi.sa.gov.au DISCLAIMER The authors warrant that they have taken all reasonable care in producing this report. The report has been through the SARDI internal review process, and has been formally approved for release by the Research Chief, Aquatic Sciences. Although all reasonable efforts have been made to ensure quality, SARDI does not warrant that the information in this report is free from errors or omissions. SARDI does not accept any liability for the contents of this report or for any consequences arising from its use or any reliance placed upon it. The SARDI Report Series is an Administrative Report Series which has not been reviewed outside the department and is not considered peer-reviewed literature. Material presented in these Administrative Reports may later be published in formal peer-reviewed scientific literature.

Monitoring the density of natural populations is crucial for ecosystem management decision making... more Monitoring the density of natural populations is crucial for ecosystem management decision making and natural resource management. The most widely used method to measure the population density of animal and plant species in natural habitats is to count organisms in sample plots. Yet evaluation of survey performance by different sample plot shapes, e.g. quadrats compared with transects, has been largely neglected since the 1990s and has not been undertaken using simulation. Simulating populations and surveys, we evaluated population density measurement precision for 900 cases, testing 30 sample plot survey designs in each of 30 spatially clustered populations. We varied three design options: elongation of plot shape while keeping sample area constant, systematic or random plot allocation, and sample size. Survey design performance varied markedly: elongating the plot shape always improved survey precision; allocating plots systematically sometimes did. (i) Averaged across all tested ...

ICES Journal of Marine Science

This paper reviews application of the Daily Egg Production Method (DEPM) to sardine (Sardinops sa... more This paper reviews application of the Daily Egg Production Method (DEPM) to sardine (Sardinops sagax) off southern Australia between 1995 and 2019. Coefficients of variation (CVs) of estimates of spawning biomass (SB) were reduced from 23–59% to 8–12% by: (i) estimating mean daily egg production (P0), spawning fraction (S), and sex ratio (R) from all historical data rather than annually; and (ii) combining batch fecundity (F) and female weight (W) into a single parameter, relative fecundity (F′ = F^/W). Total daily egg production was estimated most precisely from annual estimates of spawning area (A) and estimates of P0 obtained from historical data. Both S and R were estimated most precisely from historical data. Estimating W and F from historical data did not increase precision. F′ had lower CVs than both W and F, and was stable across years and a wide range of W. Findings demonstrate that A can be converted into a precise estimates of SB using estimates of P0, S, R, and F′ obtain...

The American Naturalist, Mar 1, 2018

We proposed two hypotheses to explain why food chains are longer in pelagic than terrestrial ecos... more We proposed two hypotheses to explain why food chains are longer in pelagic than terrestrial ecosystems: greater trophic efficiency of pelagic animal taxa at lower trophic levels and a higher pelagic biomass production rate at lower trophic levels because of smaller pelagic body masses. Giacomini favored the former, invoking in support the energetic equivalence hypothesis. We reply that the energetic equivalence hypothesis does not describe populations at differing trophic levels and so does not refute a significant role for body-mass dependence in explaining faster trophic transfer in pelagic ecosystems. Metabolic scaling as body mass to the exponent 1/4, widely accepted, remains important for trophic dynamic models. We suggest a likelihood method to compare the two hypotheses on the basis of models of whole-ecosystem energetics.

ICES Journal of Marine Science

Snapper (Chrysophrys auratus) in South Australia spawn over a wide range of daily times and hatch... more Snapper (Chrysophrys auratus) in South Australia spawn over a wide range of daily times and hatch in ∼1.5 d. Traditional estimates of daily egg production (i) divide sampled eggs into daily age cohorts, e.g. days 1 and 2, (ii) compute cohort ages by assuming that all spawning occurs at a fixed daily peak hour, and (iii) link the estimation of spawning egg density with egg mortality rate by regressing cohort egg densities against cohort age. We propose a method for estimating daily egg production, the number of eggs spawned per unit area per day (P0), without these assumptions. We use a range of estimates of snapper egg mortality rate obtained from prior studies to backcorrect for egg mortality to the age 0 spawning egg density for each stage of eggs individually rather than aggregating into daily cohorts. P0 is estimated as a mean of sample tow densities rather than as a regression intercept. This stage-based P0 estimator avoids errors associated with assuming a fixed daily spawning...

Marine and Coastal Fisheries

During daily fishing operations, spanner crab Ranina ranina catch rates can fluctuate substantial... more During daily fishing operations, spanner crab Ranina ranina catch rates can fluctuate substantially, but the environmental drivers responsible for these fluctuations largely remain unresolved. Earlier research suggests that spanner crab catchability increases with strengthening currents, but uncertainties surround the magnitude of the measured current speeds and, consequently, their relationship with catch rates. Here, we explore the effects of bottom currents on spanner crab catch rates in South East Queensland, Australia. Using generalized additive mixed modeling, our results indicated that strengthening current speeds increased catch rates until reaching approximately 0.15 m/s, at which point the catch rates began to gradually decline. Results from a general linear regression model also showed that between fishing periods carried out on the same day, catch rates increased or decreased concurrently with current speeds. We conclude that bottom current speed should be considered in future stock assessment models. Better understanding the processes responsible for changes in bottom current speed will enable more accurate estimates of spanner crab population densities in the Australian fishery and will benefit the economic efficiency of commercial crabbing operations. Furthermore, future studies that investigate the effects of current speed on catch rates for other crab species should consider differences in locomotory characteristics and how they may impact the foraging efficiency of crabs under different flow conditions.

New Zealand Journal of Marine and Freshwater Research

ABSTRACT The Australian Victorian Western Zone rock lobster fishery is assessed using standardise... more ABSTRACT The Australian Victorian Western Zone rock lobster fishery is assessed using standardised catch-per-unit-effort (CPUE). Nominal CPUE declined over 1978–2009, but this underrepresents the estimated decline in abundance, and since 2009 standardised CPUE rose notably less than nominal CPUE. This study identified vessel as a key factor that explains the discrepancy between nominal and standardised CPUE. The composition of the fleet changed since 2009, under the pressure of constraining total allowable catch quotas, with vessels exiting the fishery having substantially lower estimated catchability, which increased the average catchability of the remaining fleet. New diagnostic indices were constructed to quantify discrepancies between trends in nominal and standardised CPUE that assisted in identifying periods during which both catchability and fleet composition changed.

Fisheries Research

Abstract An extended depletion model (EDM) is presented that estimates both a time-series of the ... more Abstract An extended depletion model (EDM) is presented that estimates both a time-series of the number of animals recruiting to legal size as well as start-year exploitable population size. EDM requires total catch in numbers for all months, but fits only to monthly catch rates of legal size lobsters over a restricted period during each year, aggregating catch and recruitment over the remaining months. Applied to a South Australian southern rock lobster ( Jasus edwardsii ) fishery over 1994–2014, catch rates for January, February, and March were fit under assumptions of no recruitment and equal catchability during these months of high catches. No assumptions are made about catchability during April–December. A hybrid model, EDM-CSA, combines EDM and catch-survey analysis (CSA), by additionally fitting to a recruitment index. Comparisons were made with estimates from a length-based integrated stock assessment model (LenMod). All parameter estimation was by maximum likelihood. Mean estimates of recruitment from the models differed by no more than 3% and of population size by no more than 12%. Trends in recruitment and population size were similar among models. A likelihood ratio test using EDM detected a significant increase in catchability from 2011 to 2012, which was sustained during 2012–2014, and that was corroborated by fisheries-independent survey data. Hyperstability in fishery catch-rates was also supported.

Natural Resource Modeling

ABSTRACT

Reviews in Fish Biology and Fisheries

Australia’s lobster fisheries are relatively small in volume (9500t) compared with global product... more Australia’s lobster fisheries are relatively small in volume (9500t) compared with global production (289,000t), but are the country’s most valuable in terms of both overall production and value of export (2014 Gross Value of Production of $610 million AUD). Further, they support commercial, recreational and indigenous fishers along most of the continent’s coastline. Here we review similarities and key differences between these lobster fisheries, based on biological characteristics, fishery data collection, assessment and management methods, and supply chain considerations. A diverse range of palinurid lobsters occur in Australia, but only three genera, distributed across eight different management jurisdictions, support significant fisheries. Catches of western rock lobster Panulirus cygnus dominate landings (61%), followed by southern rock lobster Jasus edwardsii, tropical lobster Panulirus ornatus and the eastern rock lobster Sagmariasus verreauxi. Large-scale environmental influences such as climate change are impacting on these fisheries in similar or different ways forcing new management and raising the need for greater resilience in current supply chains. Although these are separate fisheries, the integrated nature of the dominant Chinese export markets suggests potentially important economic and market-related interactions. Our overview highlights the critical role of continued monitoring of recruitment pulses, in combination with robust harvest strategies, to ensure that harvests respond adequately and fisheries achieve biological and economic sustainability. Approaches that also include socio-cultural considerations (triple bottom line) are important given many fisheries include indigenous Australians. Our integrated analysis of Australian lobster fisheries highlights differences and similarities with spiny lobster fisheries worldwide and lessons from opportunities, including adapting to new free trade agreements, enhancing the reputation of wild lobsters as a whole, sharing expertise, and better alignment of supply and demand.

Fisheries Assessment and Management in Data-Limited Situations