Murat Akcakaya - Academia.edu (original) (raw)

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Papers by Murat Akcakaya

Research paper thumbnail of Constrained Maximum Likelihood Estimation of Relative Abundances of Protein Conformation in a Heterogeneous Mixture from Small Angle X-Ray Scattering Intensity Measurements

IEEE Transactions on Signal Processing, 2015

Research paper thumbnail of Moving towards a real-time system for automatically recognizing stereotypical motor movements in individuals on the autism spectrum using wireless accelerometry

Proceedings of the 2014 ACM International Joint Conference on Pervasive and Ubiquitous Computing - UbiComp '14 Adjunct, 2014

Research paper thumbnail of A Bayesian Framework for Intent Detection and Stimulation Selection in SSVEP BCIs

IEEE Signal Processing Letters, 2015

Research paper thumbnail of Biologically inspired coupled beampattern design

2010 International Waveform Diversity and Design Conference, 2010

Research paper thumbnail of Language-Model Assisted Brain Computer Interface for Typing: A Comparison of Matrix and Rapid Serial Visual Presentation

IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2015

Research paper thumbnail of RSVP IconMessenger: icon-based brain-interfaced alternative and augmentative communication

Brain-Computer Interfaces, 2014

Research paper thumbnail of Robust Classification in RSVP Keyboard

Lecture Notes in Computer Science, 2013

Research paper thumbnail of Comparison of Adaptive Symbol Presentation Methods for RSVP Keyboard

Research paper thumbnail of Bayesian Priors for Classifier Design in RSVP Keyboard

Research paper thumbnail of RSVP KeyboardTM

Research paper thumbnail of 2014 Index IEEE Reviews in Biomedical Engineering Vol. 7

Research paper thumbnail of Performance analysis of biologically inspired coupled circular antenna array

2011 IEEE International Symposium on Antennas and Propagation (APSURSI), 2011

Research paper thumbnail of Minor Surfaces are Boundaries of Mode-Based Clusters

IEEE Signal Processing Letters, 2015

ABSTRACT We show that mode-based cluster boundaries exhibit themselves as minor surfaces of the d... more ABSTRACT We show that mode-based cluster boundaries exhibit themselves as minor surfaces of the data probability density function. Based on this result, we provide a connectivity measure depending on minor surface search between sample pairs. Accordingly, we build a connectivity graph among data samples. The use of graph construction is particularly demonstrated for clustering, but applications in other machine learning areas are possible. On Gaussian mixture and kernel density estimate type probability density models, we illustrate the theoretical results with examples and demonstrate that cluster boundaries between sample pairs can be detected using a line integral. We also demonstrate an example where the data distribution has a continuous line segment as its set of local maxima (not strict), for which mean-shift like gradient flow and other mode-seeking algorithms fail to identify a single cluster, while the proposed approach successfully determines this fact.

Research paper thumbnail of MIMO radar detection of targets in compound-gaussian clutter

Conference Record - Asilomar Conference on Signals, Systems and Computers, 2008

Research paper thumbnail of Manifold learning by preserving distance orders

Pattern Recognition Letters, 2014

Nonlinear dimensionality reduction is essential for the analysis and the interpretation of high d... more Nonlinear dimensionality reduction is essential for the analysis and the interpretation of high dimensional data sets. In this manuscript, we propose a distance order preserving manifold learning algorithm that extends the basic mean-squared error cost function used mainly in multidimensional scaling (MDS)-based methods. We develop a constrained optimization problem by assuming explicit constraints on the order of distances in the low-dimensional space. In this optimization problem, as a generalization of MDS, instead of forcing a linear relationship between the distances in the high-dimensional original and low-dimensional projection space, we learn a non-decreasing relation approximated by radial basis functions. We compare the proposed method with existing manifold learning algorithms using synthetic datasets based on the commonly used residual variance and proposed percentage of violated distance orders metrics. We also perform experiments on a retinal image dataset used in Retinopathy of Prematurity (ROP) diagnosis.

Research paper thumbnail of Performance analysis of the Ormia ochracea’s coupled ears

The Journal of the Acoustical Society of America, 2008

Research paper thumbnail of MIMO Radar Sensitivity Analysis for Target Detection

IEEE Transactions on Signal Processing, 2000

Research paper thumbnail of Biologically Inspired Coupled Antenna Array for Direction-of-Arrival Estimation

IEEE Transactions on Signal Processing, 2000

Research paper thumbnail of Adaptive MIMO Radar Design and Detection in Compound-Gaussian Clutter

IEEE Transactions on Aerospace and Electronic Systems, 2000

Research paper thumbnail of A Robust Fusion Algorithm for Sensor Failure

IEEE Signal Processing Letters, 2000

ABSTRACT Accurate multimodal and multisensor detection of a target phenomenon requires knowledge ... more ABSTRACT Accurate multimodal and multisensor detection of a target phenomenon requires knowledge of probabilistic sensor characteristics to determine an appropriate fusion rule which optimizes an objective of interest, traditionally the expected Bayesian risk. However, a particular sensor characteristic can change online, introducing unaccounted additional risk to the fusion rule that was based on assumed sensor specifications. To mitigate such changes, we propose a sensor-failure-robust fusion rule assuming that only first order characteristics of a probabilistic sensor failure model are known. Under this failure model, we compute the expected Bayesian risk and minimize this risk to develop the proposed fusion method.

Research paper thumbnail of Constrained Maximum Likelihood Estimation of Relative Abundances of Protein Conformation in a Heterogeneous Mixture from Small Angle X-Ray Scattering Intensity Measurements

IEEE Transactions on Signal Processing, 2015

Research paper thumbnail of Moving towards a real-time system for automatically recognizing stereotypical motor movements in individuals on the autism spectrum using wireless accelerometry

Proceedings of the 2014 ACM International Joint Conference on Pervasive and Ubiquitous Computing - UbiComp '14 Adjunct, 2014

Research paper thumbnail of A Bayesian Framework for Intent Detection and Stimulation Selection in SSVEP BCIs

IEEE Signal Processing Letters, 2015

Research paper thumbnail of Biologically inspired coupled beampattern design

2010 International Waveform Diversity and Design Conference, 2010

Research paper thumbnail of Language-Model Assisted Brain Computer Interface for Typing: A Comparison of Matrix and Rapid Serial Visual Presentation

IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2015

Research paper thumbnail of RSVP IconMessenger: icon-based brain-interfaced alternative and augmentative communication

Brain-Computer Interfaces, 2014

Research paper thumbnail of Robust Classification in RSVP Keyboard

Lecture Notes in Computer Science, 2013

Research paper thumbnail of Comparison of Adaptive Symbol Presentation Methods for RSVP Keyboard

Research paper thumbnail of Bayesian Priors for Classifier Design in RSVP Keyboard

Research paper thumbnail of RSVP KeyboardTM

Research paper thumbnail of 2014 Index IEEE Reviews in Biomedical Engineering Vol. 7

Research paper thumbnail of Performance analysis of biologically inspired coupled circular antenna array

2011 IEEE International Symposium on Antennas and Propagation (APSURSI), 2011

Research paper thumbnail of Minor Surfaces are Boundaries of Mode-Based Clusters

IEEE Signal Processing Letters, 2015

ABSTRACT We show that mode-based cluster boundaries exhibit themselves as minor surfaces of the d... more ABSTRACT We show that mode-based cluster boundaries exhibit themselves as minor surfaces of the data probability density function. Based on this result, we provide a connectivity measure depending on minor surface search between sample pairs. Accordingly, we build a connectivity graph among data samples. The use of graph construction is particularly demonstrated for clustering, but applications in other machine learning areas are possible. On Gaussian mixture and kernel density estimate type probability density models, we illustrate the theoretical results with examples and demonstrate that cluster boundaries between sample pairs can be detected using a line integral. We also demonstrate an example where the data distribution has a continuous line segment as its set of local maxima (not strict), for which mean-shift like gradient flow and other mode-seeking algorithms fail to identify a single cluster, while the proposed approach successfully determines this fact.

Research paper thumbnail of MIMO radar detection of targets in compound-gaussian clutter

Conference Record - Asilomar Conference on Signals, Systems and Computers, 2008

Research paper thumbnail of Manifold learning by preserving distance orders

Pattern Recognition Letters, 2014

Nonlinear dimensionality reduction is essential for the analysis and the interpretation of high d... more Nonlinear dimensionality reduction is essential for the analysis and the interpretation of high dimensional data sets. In this manuscript, we propose a distance order preserving manifold learning algorithm that extends the basic mean-squared error cost function used mainly in multidimensional scaling (MDS)-based methods. We develop a constrained optimization problem by assuming explicit constraints on the order of distances in the low-dimensional space. In this optimization problem, as a generalization of MDS, instead of forcing a linear relationship between the distances in the high-dimensional original and low-dimensional projection space, we learn a non-decreasing relation approximated by radial basis functions. We compare the proposed method with existing manifold learning algorithms using synthetic datasets based on the commonly used residual variance and proposed percentage of violated distance orders metrics. We also perform experiments on a retinal image dataset used in Retinopathy of Prematurity (ROP) diagnosis.

Research paper thumbnail of Performance analysis of the Ormia ochracea’s coupled ears

The Journal of the Acoustical Society of America, 2008

Research paper thumbnail of MIMO Radar Sensitivity Analysis for Target Detection

IEEE Transactions on Signal Processing, 2000

Research paper thumbnail of Biologically Inspired Coupled Antenna Array for Direction-of-Arrival Estimation

IEEE Transactions on Signal Processing, 2000

Research paper thumbnail of Adaptive MIMO Radar Design and Detection in Compound-Gaussian Clutter

IEEE Transactions on Aerospace and Electronic Systems, 2000

Research paper thumbnail of A Robust Fusion Algorithm for Sensor Failure

IEEE Signal Processing Letters, 2000

ABSTRACT Accurate multimodal and multisensor detection of a target phenomenon requires knowledge ... more ABSTRACT Accurate multimodal and multisensor detection of a target phenomenon requires knowledge of probabilistic sensor characteristics to determine an appropriate fusion rule which optimizes an objective of interest, traditionally the expected Bayesian risk. However, a particular sensor characteristic can change online, introducing unaccounted additional risk to the fusion rule that was based on assumed sensor specifications. To mitigate such changes, we propose a sensor-failure-robust fusion rule assuming that only first order characteristics of a probabilistic sensor failure model are known. Under this failure model, we compute the expected Bayesian risk and minimize this risk to develop the proposed fusion method.

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