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Papers by Murray Thompson

Ecology Letters, 2018

Body mass–abundance (M‐N) allometries provide a key measure of community structure, and deviation... more Body mass–abundance (M‐N) allometries provide a key measure of community structure, and deviations from scaling predictions could reveal how cross‐ecosystem subsidies alter food webs. For 31 streams across the UK, we tested the hypothesis that linear log‐log M‐N scaling is shallower than that predicted by allometric scaling theory when top predators have access to allochthonous prey. These streams all contained a common and widespread top predator (brown trout) that regularly feeds on terrestrial prey and, as hypothesised, deviations from predicted scaling increased with its dominance of the fish assemblage. Our study identifies a key beneficiary of cross‐ecosystem subsidies at the top of stream food webs and elucidates how these inputs can reshape the size‐structure of these ‘open’ systems.

Journal of Applied Ecology, 2017

Extensive habitat destruction and pollution have caused dramatic declines in aquatic biodiversity... more Extensive habitat destruction and pollution have caused dramatic declines in aquatic biodiversity at local to global scales. In rivers, the reintroduction of large woody debris is a common method aimed at restoring degraded ecosystems through “rewilding.” However, causal evidence for its effectiveness is lacking due to a dearth of replicated before–after control‐impact field experiments. We conducted the first replicated experiment of large woody debris rewilding across multiple rivers and organisational levels, from individual target species populations to entire food webs. For the first time, we demonstrate causal links between habitat restoration, biodiversity restoration and food web responses. Populations of invertebrates and an apex predator, brown trout (Salmo trutta), increased, and food web analysis suggested increased biomass flux from basal resources to invertebrates and subsequently fishes within restored reaches. Synthesis and applications. This study contributes signif...

Journal of Applied Ecology, 2014

1. Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet curr... more 1. Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems. 2. Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses. 3. Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network-based perspective.

Advances in Ecological Research, 2010

Attempts to gauge the biological impacts of climate change have typically focussed on the lower l... more Attempts to gauge the biological impacts of climate change have typically focussed on the lower levels of organization (individuals to populations), rather than considering more complex multi-species systems, such as entire ecological networks (food webs, mutualistic and host-parasitoid networks). We evaluate the possibility that a few principal drivers underpin network-level responses to climate change, and that these drivers can be studied to develop a more coherent theoretical framework than is currently provided by phenomenological approaches. For instance, warming will elevate individual ectotherm metabolic rates, and direct and indirect effects of changes in atmospheric conditions are expected to alter the stoichiometry of interactions between primary consumers and basal resources; these effects are general and pervasive, and will permeate through the entire networks that they affect. In addition, changes in the density and viscosity of aqueous media could alter interactions among very small organisms and disrupt the pycnoclines that currently compartmentalize many aquatic networks in time and space. We identify a range of approaches and potential model systems that are particularly well suited to network-level studies within the context of climate change. We also highlight potentially fruitful areas of research with a view to improving our predictive power regarding climate change impacts on networks. We focus throughout on mechanistic approaches rooted in first principles that demonstrate potential for application across a wide range of taxa and systems. 72 GUY WOODWARD ET AL.

Methods in Ecology and Evolution, 2012

Summary There has been a lack of software available to ecologists for the management, visualisati... more Summary There has been a lack of software available to ecologists for the management, visualisation and analysis of ecological community and food web data. Researchers have been forced to implement their own data formats and software, often from scratch, resulting in duplicated effort and bespoke solutions that are difficult to apply to future analyses and comparative studies. We introduce Cheddar – an R package that provides standard, transparent implementations of a wide range of food web and community‐level analyses and plots, focussing on ecological network data that are augmented with estimates of body mass and/or numerical abundance. The package allows analysis of individual communities, as well as collections of communities, allowing examination of changes in structure through time, across environmental gradients, or due to experimental manipulations. Several commonly analysed food web data sets are included and used in worked examples. This is the first time these important ...

Freshwater Biology, 2015

Summary Pesticides can have strong deleterious impacts in fresh waters, but understanding how the... more Summary Pesticides can have strong deleterious impacts in fresh waters, but understanding how these effects cascade through natural ecosystems, from microbes to apex predators, is limited because research that spans multiple levels of biological organisation is rare. We report how an accidental insecticide spill altered the structure and functioning of a river across levels ranging from genes to ecosystems. We quantified the impacts on assemblages of microbes, diatoms, macroinvertebrates and fish and measured leaf‐litter decomposition rates and microbial functional potential at upstream control and downstream impacted sites 2 months after the spill. Both direct and indirect impacts were evident across multiple levels of organisation and taxa, from the base of the food web to higher trophic levels. At the molecular level, differences in functional gene abundance within the impacted sites reflected a combination of direct and indirect effects of the pesticide, via elevated abundances ...

The Journal of applied ecology, 2014

Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current... more Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems.Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses.Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ec...

Ecology Letters, 2018

Body mass–abundance (M‐N) allometries provide a key measure of community structure, and deviation... more Body mass–abundance (M‐N) allometries provide a key measure of community structure, and deviations from scaling predictions could reveal how cross‐ecosystem subsidies alter food webs. For 31 streams across the UK, we tested the hypothesis that linear log‐log M‐N scaling is shallower than that predicted by allometric scaling theory when top predators have access to allochthonous prey. These streams all contained a common and widespread top predator (brown trout) that regularly feeds on terrestrial prey and, as hypothesised, deviations from predicted scaling increased with its dominance of the fish assemblage. Our study identifies a key beneficiary of cross‐ecosystem subsidies at the top of stream food webs and elucidates how these inputs can reshape the size‐structure of these ‘open’ systems.

Journal of Applied Ecology, 2017

Extensive habitat destruction and pollution have caused dramatic declines in aquatic biodiversity... more Extensive habitat destruction and pollution have caused dramatic declines in aquatic biodiversity at local to global scales. In rivers, the reintroduction of large woody debris is a common method aimed at restoring degraded ecosystems through “rewilding.” However, causal evidence for its effectiveness is lacking due to a dearth of replicated before–after control‐impact field experiments. We conducted the first replicated experiment of large woody debris rewilding across multiple rivers and organisational levels, from individual target species populations to entire food webs. For the first time, we demonstrate causal links between habitat restoration, biodiversity restoration and food web responses. Populations of invertebrates and an apex predator, brown trout (Salmo trutta), increased, and food web analysis suggested increased biomass flux from basal resources to invertebrates and subsequently fishes within restored reaches. Synthesis and applications. This study contributes signif...

Journal of Applied Ecology, 2014

1. Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet curr... more 1. Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems. 2. Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses. 3. Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ecological responses that can only be understood from a network-based perspective.

Advances in Ecological Research, 2010

Attempts to gauge the biological impacts of climate change have typically focussed on the lower l... more Attempts to gauge the biological impacts of climate change have typically focussed on the lower levels of organization (individuals to populations), rather than considering more complex multi-species systems, such as entire ecological networks (food webs, mutualistic and host-parasitoid networks). We evaluate the possibility that a few principal drivers underpin network-level responses to climate change, and that these drivers can be studied to develop a more coherent theoretical framework than is currently provided by phenomenological approaches. For instance, warming will elevate individual ectotherm metabolic rates, and direct and indirect effects of changes in atmospheric conditions are expected to alter the stoichiometry of interactions between primary consumers and basal resources; these effects are general and pervasive, and will permeate through the entire networks that they affect. In addition, changes in the density and viscosity of aqueous media could alter interactions among very small organisms and disrupt the pycnoclines that currently compartmentalize many aquatic networks in time and space. We identify a range of approaches and potential model systems that are particularly well suited to network-level studies within the context of climate change. We also highlight potentially fruitful areas of research with a view to improving our predictive power regarding climate change impacts on networks. We focus throughout on mechanistic approaches rooted in first principles that demonstrate potential for application across a wide range of taxa and systems. 72 GUY WOODWARD ET AL.

Methods in Ecology and Evolution, 2012

Summary There has been a lack of software available to ecologists for the management, visualisati... more Summary There has been a lack of software available to ecologists for the management, visualisation and analysis of ecological community and food web data. Researchers have been forced to implement their own data formats and software, often from scratch, resulting in duplicated effort and bespoke solutions that are difficult to apply to future analyses and comparative studies. We introduce Cheddar – an R package that provides standard, transparent implementations of a wide range of food web and community‐level analyses and plots, focussing on ecological network data that are augmented with estimates of body mass and/or numerical abundance. The package allows analysis of individual communities, as well as collections of communities, allowing examination of changes in structure through time, across environmental gradients, or due to experimental manipulations. Several commonly analysed food web data sets are included and used in worked examples. This is the first time these important ...

Freshwater Biology, 2015

Summary Pesticides can have strong deleterious impacts in fresh waters, but understanding how the... more Summary Pesticides can have strong deleterious impacts in fresh waters, but understanding how these effects cascade through natural ecosystems, from microbes to apex predators, is limited because research that spans multiple levels of biological organisation is rare. We report how an accidental insecticide spill altered the structure and functioning of a river across levels ranging from genes to ecosystems. We quantified the impacts on assemblages of microbes, diatoms, macroinvertebrates and fish and measured leaf‐litter decomposition rates and microbial functional potential at upstream control and downstream impacted sites 2 months after the spill. Both direct and indirect impacts were evident across multiple levels of organisation and taxa, from the base of the food web to higher trophic levels. At the molecular level, differences in functional gene abundance within the impacted sites reflected a combination of direct and indirect effects of the pesticide, via elevated abundances ...

The Journal of applied ecology, 2014

Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current... more Monitoring anthropogenic impacts is essential for managing and conserving ecosystems, yet current biomonitoring approaches lack the tools required to deal with the effects of stressors on species and their interactions in complex natural systems.Ecological networks (trophic or mutualistic) can offer new insights into ecosystem degradation, adding value to current taxonomically constrained schemes. We highlight some examples to show how new network approaches can be used to interpret ecological responses.Synthesis and applications. Augmenting routine biomonitoring data with interaction data derived from the literature, complemented with ground-truthed data from direct observations where feasible, allows us to begin to characterise large numbers of ecological networks across environmental gradients. This process can be accelerated by adopting emerging technologies and novel analytical approaches, enabling biomonitoring to move beyond simple pass/fail schemes and to address the many ec...