Noris Salazar Allen - Academia.edu (original) (raw)

Papers by Noris Salazar Allen

Genome Biology and Evolution, 2019

Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant... more Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant lineages, offering a unique window to study the evolution and genetics of plant–microbe interaction. However, very few complete genomes exist for plant cyanobionts, and therefore little is known about their genomic and functional diversity. Here, we present four complete genomes of cyanobacteria isolated from bryophytes. Nanopore long-read sequencing allowed us to obtain circular contigs for all the main chromosomes and most of the plasmids. We found that despite having a low 16S rRNA sequence divergence, the four isolates exhibit considerable genome reorganizations and variation in gene content. Furthermore, three of the four isolates possess genes encoding vanadium (V)-nitrogenase (vnf), which is uncommon among diazotrophs and has not been previously reported in plant cyanobionts. In two cases, the vnf genes were found on plasmids, implying possible plasmid-mediated horizontal gene tr...

Community dataset of epiphyll assembly on the host plant Piper grande. The dataset include presen... more Community dataset of epiphyll assembly on the host plant Piper grande. The dataset include presence/absence data, the representation index and sexual expression of epiphyllous species

Questions The importance of tropical rainforest gap dynamics in biodiversity maintenance is not f... more Questions The importance of tropical rainforest gap dynamics in biodiversity maintenance is not fully understood, in particular for taxa other than trees and lianas. We used epiphylls on rainforest leaves to study the importance of leaf- and forest-scale succession in determining biodiversity patterns by characterizing community change with leaf age in gaps and closed-forest habitats. We asked: 1. Do epiphylls show specialization for leaf and forest successional stages? 2. Can early and late-successional epiphyllous species be recognized at these two scales? 3. How do epiphyll presence, species richness, and cover change with leaf and forest successional stages? Location Barro Colorado Island, Panama. Methods Data were collected from 420 leaves, in three age groups and at two heights on shrubs in gaps and closed forest. We calculated turnover and nestedness components of dissimilarity to evaluate the importance of species replacement or accumulation during leaf and forest succession...

Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecos... more Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecosystems. Canopy access was used to analyse the distribution and vertical stratification of bryophyte epiphytes within tree crowns at nine forest sites across a 3400 m elevational gradient in Peru, from the Amazonian basin to the high Andes. The stable isotope compositions of bryophyte organic material (¹³C/¹²C and ¹⁸O/¹⁶O) are associated with surface water diffusive limitations and, along with C/N content, provide a generic index for the extent of cloud immersion. From lowland to cloud forest δ¹³C increased from −33‰ to −27‰, while δ¹⁸O increased from 16.3‰ to 18.0‰. Epiphytic bryophyte and associated canopy soil biomass in the cloud immersion zone was estimated at up to 45 t dry mass ha⁻¹, and overall water holding capacity was e...

PhytoKeys, 2020

Octoblepharum peristomiruptum, a new species of moss in the family Octoblepharaceae from Panama a... more Octoblepharum peristomiruptum, a new species of moss in the family Octoblepharaceae from Panama and Brazil, is described and illustrated. The new species is characterised by plants with a reddish-purple colour particularly at the leaf bases, peristomes of eight teeth, each tooth composed of two rows of cells, fenestrate and usually completely separated at the base, strongly vertically striate-reticulate, some striations forked-like in shape. At the base of the teeth, some striations are horizontally orientated, poorly developed or absent, particularly on the cell wall that is rupturing in the separation of the vertical rows of the cells that form each tooth.

Se comunican 13 nuevos registros de hepaticas para Panama, de los cuales 8 son nuevos registros p... more Se comunican 13 nuevos registros de hepaticas para Panama, de los cuales 8 son nuevos registros para Centroamerica. Se incluye en la flora panamena el genero Thysananthus

Nova Hedwigia, 2018

A new species of Prionolejeunea collected in the tropical premontane wet forest of Parque Naciona... more A new species of Prionolejeunea collected in the tropical premontane wet forest of Parque Nacional General de División Omar Torrijos Herrera, El Cope, in Panama, is described and illustrated. The diagnostic characters of Prionolejeunea clementinae are: 1) a straight and well limited vitta extending from the base to the middle of the leaf lobe, 4-5 cells long and 2 (-3) cells wide; 2) the dorsal surface of the lobe is roughened throughout due to uni-papillose cells, including the vitta cells; 3) broadly acute to rounded leaf apex; 4) leaf margins denticulate to dentate, teeth 1-cell long; 5) lobule with denticulate keel and surface roughened by unipapillose cells, specially near the keel; 6) male bract keels denticulate and surface roughened by unipapillose cells.

American Journal of Botany, 2020

Unique among vascular plants, some species of Selaginella have single giant chloroplasts in their... more Unique among vascular plants, some species of Selaginella have single giant chloroplasts in their epidermal or upper mesophyll cells (monoplastidy, M), varying in structure between species. Structural variants include several forms of bizonoplast with unique dimorphic ultrastructure. Better understanding of these structural variants, their prevalence, environmental correlates and phylogenetic association, has the potential to shed new light on chloroplast biology unavailable from any other plant group. METHODS: The chloroplast ultrastructure of 76 Selaginella species was studied with various microscopic techniques. Environmental data for selected species and subgeneric relationships were compared against chloroplast traits. RESULTS: We delineated five chloroplast categories: ME (monoplastidy in a dorsal epidermal cell), MM (monoplastidy in a mesophyll cell), OL (oligoplastidy), Mu (multiplastidy, present in the most basal species), and RC (reduced or vestigial chloroplasts). Of 44 ME species, 11 have bizonoplasts, cup-shaped (concave upper zone) or bilobed (basal hinge, a new discovery), with upper zones of parallel thylakoid membranes varying subtly between species. Monoplastidy, found in 49 species, is strongly shade associated. Bizonoplasts are only known in deep-shade species (<2.1% full sunlight) of subgenus Stachygynandrum but in both the Old and New Worlds. CONCLUSIONS: Multiplastidic chloroplasts are most likely basal, implying that monoplastidy and bizonoplasts are derived traits, with monoplastidy evolving at least twice, potentially as an adaptation to low light. Although there is insufficient information to understand the adaptive significance of the numerous structural variants, they are unmatched in the vascular plants, suggesting unusual evolutionary flexibility in this ancient plant genus.

Journal of Vegetation Science, 2019

Natural Product Communications, 2019

We report for the first time the chemical profiling of volatile organic compounds (VOCs) of gamet... more We report for the first time the chemical profiling of volatile organic compounds (VOCs) of gametophyte and sporophyte life stages of Leiosporoceros dussii, from Panama by using headspace-solid phase microextraction-gas chromatography-mass spectrometry in order to assess distinguishing chemical markers between the male and female gametophytes, and sporophytes of this hornwort. A total of 27 VOCs were identified in L. dussii. Furthermore, the gametophyte and sporophyte showed clear differences in the type and amount of VOCs. The main constituents of L. dussii female thalli were menthacamphor (17.8%), hexanol (12.3%), and menthyl acetate (12.3%), while the major compounds of the male thalli were hexanol (25.3%), β-ionone (21.1%), benzeneacetaldehyde (17.6%), and β-cyclocitral (14.0%). The main VOCs of the sporophytes were hexanal (19.3%), β-cyclocitral (17.6%), 2-nonenal (15.8%), hexanol (12.5%), and β-ionone (10.2%). Unique compounds found in the female thalli were 3-pentanone, 3-oct...

Boletín de la Sociedad Argentina de Botánica, 2017

Identificación de compuestos volátiles de tres especies de Cyathodium (Marchantiophyta: Cyathodi... more Identificación de compuestos volátiles de tres especies de Cyathodium (Marchantiophyta: Cyathodiaceae) y Leiosporoceros dussii (Anthocerotophyta: Leiosporocerotaceae) de Panama y C. foetidissimum de Costa Rica. Cyathodium es una hepática marchantial con cinco especies comunicadas para el Neotrópico. Se estudió la composición química de tres especies que crecen en Panamá (C. bischlerianum, C. spruceanum, C. cavernarum) y, una que crece en Costa Rica (C. foetidissimum). Plantas femeninas y masculinas del dioico C. spruceanum fueron muy similares en su composición química excepto por dos compuestos que se encontraron solo en plantas femeninas. Todas las muestras de Cyathodium spruceanum y C. bischlerianum contenían, en un porcentaje de menos del tres por ciento, los sesquiterpenos germacreno D y biciclogermacreno. La presencia de estos compuestos sugiere una afinidad muy cercana entre las dos especies. Cyathodium bischlerianum contiene principalmente monoterpenos aromáticos con neroli...

Zeitschrift für Naturforschung C, 1991

An axenic culture of Symphyogyna brongniartii has been initiated from spores on modified Benecke ... more An axenic culture of Symphyogyna brongniartii has been initiated from spores on modified Benecke medium. Growth was best on Gam borg B5 medium with 0.3% sucrose, with a doubling time of 36 days. The culture produced the same terpenoids as plants growing in their natural habitat, perrottetianal A being the major constituent. Also found were bicyclogermacrene, β-barbatene, δ-selinene, β-cubebene, spathulenol, and (-)-geosm in . The latter compound was hitherto only known from microorganisms. Synthesis rate of terpenoids during the passage period and quantitative differences in terpenoid production on different mineral media were investigated.

Natural Product Communications, 2018

We report for the first time the chemical composition of volatile components (VOCs) of two subspe... more We report for the first time the chemical composition of volatile components (VOCs) of two subspecies, D. hirsuta subsp. hirsuta and D. hirsuta subsp. nepalensis, of the liverwort Dumortiera hirsuta from Panama by using headspace-solid phase microextraction-gas chromatography-mass spectrometry in order to assess distinguishing markers between the two species. Forty VOCs were identified in total for both subspecies. Of these, 34 are reported for the first time in D. hirsuta. Furthermore, both subspecies showed clear differences in the type and amount of VOCs. The major compounds in D. hirsuta subsp. hirsuta were α-gurjunene, β-selinene, α-guaiene, α-humulene and β-caryophyllene; while in D. hirsuta subsp. nepalensis were ledene, α-gurjunene, β-caryophyllene and α-guaiene, respectively. Two oxygenated sesquiterpenes, globulol and nerolidol, could be considered as possible distinguishing chemical markers between these two subspecies. We conclude that both morphotypes of D. hirsuta are ...

Genome Biology and Evolution, 2019

Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant... more Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant lineages, offering a unique window to study the evolution and genetics of plant–microbe interaction. However, very few complete genomes exist for plant cyanobionts, and therefore little is known about their genomic and functional diversity. Here, we present four complete genomes of cyanobacteria isolated from bryophytes. Nanopore long-read sequencing allowed us to obtain circular contigs for all the main chromosomes and most of the plasmids. We found that despite having a low 16S rRNA sequence divergence, the four isolates exhibit considerable genome reorganizations and variation in gene content. Furthermore, three of the four isolates possess genes encoding vanadium (V)-nitrogenase (vnf), which is uncommon among diazotrophs and has not been previously reported in plant cyanobionts. In two cases, the vnf genes were found on plasmids, implying possible plasmid-mediated horizontal gene tr...

Community dataset of epiphyll assembly on the host plant Piper grande. The dataset include presen... more Community dataset of epiphyll assembly on the host plant Piper grande. The dataset include presence/absence data, the representation index and sexual expression of epiphyllous species

Questions The importance of tropical rainforest gap dynamics in biodiversity maintenance is not f... more Questions The importance of tropical rainforest gap dynamics in biodiversity maintenance is not fully understood, in particular for taxa other than trees and lianas. We used epiphylls on rainforest leaves to study the importance of leaf- and forest-scale succession in determining biodiversity patterns by characterizing community change with leaf age in gaps and closed-forest habitats. We asked: 1. Do epiphylls show specialization for leaf and forest successional stages? 2. Can early and late-successional epiphyllous species be recognized at these two scales? 3. How do epiphyll presence, species richness, and cover change with leaf and forest successional stages? Location Barro Colorado Island, Panama. Methods Data were collected from 420 leaves, in three age groups and at two heights on shrubs in gaps and closed forest. We calculated turnover and nestedness components of dissimilarity to evaluate the importance of species replacement or accumulation during leaf and forest succession...

Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecos... more Liverworts and mosses are a major component of the epiphyte flora of tropical montane forest ecosystems. Canopy access was used to analyse the distribution and vertical stratification of bryophyte epiphytes within tree crowns at nine forest sites across a 3400 m elevational gradient in Peru, from the Amazonian basin to the high Andes. The stable isotope compositions of bryophyte organic material (¹³C/¹²C and ¹⁸O/¹⁶O) are associated with surface water diffusive limitations and, along with C/N content, provide a generic index for the extent of cloud immersion. From lowland to cloud forest δ¹³C increased from −33‰ to −27‰, while δ¹⁸O increased from 16.3‰ to 18.0‰. Epiphytic bryophyte and associated canopy soil biomass in the cloud immersion zone was estimated at up to 45 t dry mass ha⁻¹, and overall water holding capacity was e...

PhytoKeys, 2020

Octoblepharum peristomiruptum, a new species of moss in the family Octoblepharaceae from Panama a... more Octoblepharum peristomiruptum, a new species of moss in the family Octoblepharaceae from Panama and Brazil, is described and illustrated. The new species is characterised by plants with a reddish-purple colour particularly at the leaf bases, peristomes of eight teeth, each tooth composed of two rows of cells, fenestrate and usually completely separated at the base, strongly vertically striate-reticulate, some striations forked-like in shape. At the base of the teeth, some striations are horizontally orientated, poorly developed or absent, particularly on the cell wall that is rupturing in the separation of the vertical rows of the cells that form each tooth.

Se comunican 13 nuevos registros de hepaticas para Panama, de los cuales 8 son nuevos registros p... more Se comunican 13 nuevos registros de hepaticas para Panama, de los cuales 8 son nuevos registros para Centroamerica. Se incluye en la flora panamena el genero Thysananthus

Nova Hedwigia, 2018

A new species of Prionolejeunea collected in the tropical premontane wet forest of Parque Naciona... more A new species of Prionolejeunea collected in the tropical premontane wet forest of Parque Nacional General de División Omar Torrijos Herrera, El Cope, in Panama, is described and illustrated. The diagnostic characters of Prionolejeunea clementinae are: 1) a straight and well limited vitta extending from the base to the middle of the leaf lobe, 4-5 cells long and 2 (-3) cells wide; 2) the dorsal surface of the lobe is roughened throughout due to uni-papillose cells, including the vitta cells; 3) broadly acute to rounded leaf apex; 4) leaf margins denticulate to dentate, teeth 1-cell long; 5) lobule with denticulate keel and surface roughened by unipapillose cells, specially near the keel; 6) male bract keels denticulate and surface roughened by unipapillose cells.

American Journal of Botany, 2020

Unique among vascular plants, some species of Selaginella have single giant chloroplasts in their... more Unique among vascular plants, some species of Selaginella have single giant chloroplasts in their epidermal or upper mesophyll cells (monoplastidy, M), varying in structure between species. Structural variants include several forms of bizonoplast with unique dimorphic ultrastructure. Better understanding of these structural variants, their prevalence, environmental correlates and phylogenetic association, has the potential to shed new light on chloroplast biology unavailable from any other plant group. METHODS: The chloroplast ultrastructure of 76 Selaginella species was studied with various microscopic techniques. Environmental data for selected species and subgeneric relationships were compared against chloroplast traits. RESULTS: We delineated five chloroplast categories: ME (monoplastidy in a dorsal epidermal cell), MM (monoplastidy in a mesophyll cell), OL (oligoplastidy), Mu (multiplastidy, present in the most basal species), and RC (reduced or vestigial chloroplasts). Of 44 ME species, 11 have bizonoplasts, cup-shaped (concave upper zone) or bilobed (basal hinge, a new discovery), with upper zones of parallel thylakoid membranes varying subtly between species. Monoplastidy, found in 49 species, is strongly shade associated. Bizonoplasts are only known in deep-shade species (<2.1% full sunlight) of subgenus Stachygynandrum but in both the Old and New Worlds. CONCLUSIONS: Multiplastidic chloroplasts are most likely basal, implying that monoplastidy and bizonoplasts are derived traits, with monoplastidy evolving at least twice, potentially as an adaptation to low light. Although there is insufficient information to understand the adaptive significance of the numerous structural variants, they are unmatched in the vascular plants, suggesting unusual evolutionary flexibility in this ancient plant genus.

Journal of Vegetation Science, 2019

Natural Product Communications, 2019

We report for the first time the chemical profiling of volatile organic compounds (VOCs) of gamet... more We report for the first time the chemical profiling of volatile organic compounds (VOCs) of gametophyte and sporophyte life stages of Leiosporoceros dussii, from Panama by using headspace-solid phase microextraction-gas chromatography-mass spectrometry in order to assess distinguishing chemical markers between the male and female gametophytes, and sporophytes of this hornwort. A total of 27 VOCs were identified in L. dussii. Furthermore, the gametophyte and sporophyte showed clear differences in the type and amount of VOCs. The main constituents of L. dussii female thalli were menthacamphor (17.8%), hexanol (12.3%), and menthyl acetate (12.3%), while the major compounds of the male thalli were hexanol (25.3%), β-ionone (21.1%), benzeneacetaldehyde (17.6%), and β-cyclocitral (14.0%). The main VOCs of the sporophytes were hexanal (19.3%), β-cyclocitral (17.6%), 2-nonenal (15.8%), hexanol (12.5%), and β-ionone (10.2%). Unique compounds found in the female thalli were 3-pentanone, 3-oct...

Boletín de la Sociedad Argentina de Botánica, 2017

Identificación de compuestos volátiles de tres especies de Cyathodium (Marchantiophyta: Cyathodi... more Identificación de compuestos volátiles de tres especies de Cyathodium (Marchantiophyta: Cyathodiaceae) y Leiosporoceros dussii (Anthocerotophyta: Leiosporocerotaceae) de Panama y C. foetidissimum de Costa Rica. Cyathodium es una hepática marchantial con cinco especies comunicadas para el Neotrópico. Se estudió la composición química de tres especies que crecen en Panamá (C. bischlerianum, C. spruceanum, C. cavernarum) y, una que crece en Costa Rica (C. foetidissimum). Plantas femeninas y masculinas del dioico C. spruceanum fueron muy similares en su composición química excepto por dos compuestos que se encontraron solo en plantas femeninas. Todas las muestras de Cyathodium spruceanum y C. bischlerianum contenían, en un porcentaje de menos del tres por ciento, los sesquiterpenos germacreno D y biciclogermacreno. La presencia de estos compuestos sugiere una afinidad muy cercana entre las dos especies. Cyathodium bischlerianum contiene principalmente monoterpenos aromáticos con neroli...

Zeitschrift für Naturforschung C, 1991

An axenic culture of Symphyogyna brongniartii has been initiated from spores on modified Benecke ... more An axenic culture of Symphyogyna brongniartii has been initiated from spores on modified Benecke medium. Growth was best on Gam borg B5 medium with 0.3% sucrose, with a doubling time of 36 days. The culture produced the same terpenoids as plants growing in their natural habitat, perrottetianal A being the major constituent. Also found were bicyclogermacrene, β-barbatene, δ-selinene, β-cubebene, spathulenol, and (-)-geosm in . The latter compound was hitherto only known from microorganisms. Synthesis rate of terpenoids during the passage period and quantitative differences in terpenoid production on different mineral media were investigated.

Natural Product Communications, 2018

We report for the first time the chemical composition of volatile components (VOCs) of two subspe... more We report for the first time the chemical composition of volatile components (VOCs) of two subspecies, D. hirsuta subsp. hirsuta and D. hirsuta subsp. nepalensis, of the liverwort Dumortiera hirsuta from Panama by using headspace-solid phase microextraction-gas chromatography-mass spectrometry in order to assess distinguishing markers between the two species. Forty VOCs were identified in total for both subspecies. Of these, 34 are reported for the first time in D. hirsuta. Furthermore, both subspecies showed clear differences in the type and amount of VOCs. The major compounds in D. hirsuta subsp. hirsuta were α-gurjunene, β-selinene, α-guaiene, α-humulene and β-caryophyllene; while in D. hirsuta subsp. nepalensis were ledene, α-gurjunene, β-caryophyllene and α-guaiene, respectively. Two oxygenated sesquiterpenes, globulol and nerolidol, could be considered as possible distinguishing chemical markers between these two subspecies. We conclude that both morphotypes of D. hirsuta are ...