Olena Trush - Academia.edu (original) (raw)

Papers by Olena Trush

Research paper thumbnail of Kidney organoid research: current status and applications

Current Opinion in Genetics & Development

Research paper thumbnail of Front propagation and intermingling of cell types: experiments versus mathematical model simulations

Different Front propagation or intermingling via cell adhesion strength. Experiments versus model... more Different Front propagation or intermingling via cell adhesion strength. Experiments versus model. Video corresponding to Figure 5.<br>

Research paper thumbnail of Simulation relative to Figure 4 D: Engulfment

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Partial engulfment

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Segregation

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Mixing

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of autosomal-recessive form of HSP ( SPG 39 )

Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced ... more Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced delayed neuropathy (OPIDN) and also one of the genetic factors responsible for the development of the hereditary spastic paraplegia (HSP), characterized by axon degeneration of motoneurons causing progressive lower-limb spastic paralysis. Both HSP and OPIDN are characterized by the distal axonopathy. The molecular mechanisms underlying the axonopathy involved in HSP and OPIDN are poorly understood. In order to have a better understanding of the mechanisms that NTE is involved in, we used one of the homologs, human NTE. Swiss cheese (sws) is a Drosophila melanogaster ortholog of NTE with 39% homology. Mutations in sws as it was shown before lead to age-dependent neurodegeneration, structure alteration of glia cells, and reduced insect life span. To study SWS functions, we used the system of the third-instar larval neuromuscular junctions of D. melanogaster. In this study, we show that mut...

Research paper thumbnail of DWnt4 and DWnt10 Regulate Morphogenesis and Arrangement of Columnar Units via Fz2/PCP Signaling in the Drosophila Brain

Cell Reports, 2020

Highlights d Neurons assemble to establish a column d Planar cell polarity regulates the orientat... more Highlights d Neurons assemble to establish a column d Planar cell polarity regulates the orientation of neurons and columns d Wnt ligands globally regulate neuronal orientation and column arrangement

Research paper thumbnail of Dscam1 establishes the columnar units through lineage-dependent repulsion between sister neurons in the fly brain

Nature Communications, 2020

The brain is organized morphologically and functionally into a columnar structure. According to t... more The brain is organized morphologically and functionally into a columnar structure. According to the radial unit hypothesis, neurons from the same lineage form a radial unit that contributes to column formation. However, the molecular mechanisms that link neuronal lineage and column formation remain elusive. Here, we show that neurons from the same lineage project to different columns under control of Down syndrome cell adhesion molecule (Dscam) in the fly brain. Dscam1 is temporally expressed in newly born neuroblasts and is inherited by their daughter neurons. The transient transcription of Dscam1 in neuroblasts enables the expression of the same Dscam1 splice isoform within cells of the same lineage, causing lineage-dependent repulsion. In the absence of Dscam1 function, neurons from the same lineage project to the same column. When the splice diversity of Dscam1 is reduced, column formation is significantly compromised. Thus, Dscam1 controls column formation through lineage-depen...

Research paper thumbnail of A population dynamics model of cell-cell adhesion incorporating population pressure and density saturation

Journal of Theoretical Biology, 2019

We discuss several continuum cell-cell adhesion models based on the underlying microscopic assump... more We discuss several continuum cell-cell adhesion models based on the underlying microscopic assumptions. We propose an improvement on these models leading to sharp fronts and intermingling invasion fronts between different cell type populations. The model is based on basic principles of localized repulsion and nonlocal attraction due to adhesion forces at the microscopic level. The new model is able to capture both qualitatively and quantitatively experiments by Katsunuma et al. (2016) [J. Cell Biol. 212(5), pp. 561-575]. We also review some of the applications of these models in other areas of tissue growth in developmental biology. We finally explore the resulting qualitative behavior due to cell-cell repulsion.

Research paper thumbnail of Temporal patterning of neurogenesis and neural wiring in the fly visual system

Neuroscience research, Jan 15, 2018

During neural development, a wide variety of neurons are produced in a highly coordinated manner ... more During neural development, a wide variety of neurons are produced in a highly coordinated manner and form complex and highly coordinated neural circuits. Temporal patterning of neuron type specification plays very important roles in orchestrating the production and wiring of neurons. The fly visual system, which is composed of the retina and the optic lobe of the brain, is an outstanding model system to study temporal patterning and wiring of the nervous system. All of the components of the fly visual system are topographically connected, and each ommatidial unit in the retina corresponds to a columnar unit in the optic lobe. In the retina, the wave of differentiation follows the morphogenetic furrow, which progresses in a posterior-to-anterior direction. At the same time, differentiation of the optic lobe also accompanies the wave of differentiation or temporally coordinated neurogenesis. Thus, temporal patterning plays important roles in establishing topographic connections throug...

Research paper thumbnail of Swiss Cheese, Drosophila Ortholog of Hereditary Spastic Paraplegia Gene NTE, Maintains Neuromuscular Junction Development and Microtubule Network

Drosophila melanogaster - Model for Recent Advances in Genetics and Therapeutics, 2018

Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced ... more Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced delayed neuropathy (OPIDN) and also one of the genetic factors responsible for the development of the hereditary spastic paraplegia (HSP), characterized by axon degeneration of motoneurons causing progressive lower-limb spastic paralysis. Both HSP and OPIDN are characterized by the distal axonopathy. The molecular mechanisms underlying the axonopathy involved in HSP and OPIDN are poorly understood. In order to have a better understanding of the mechanisms that NTE is involved in, we used one of the homologs, human NTE. Swiss cheese (sws) is a Drosophila melanogaster ortholog of NTE with 39% homology. Mutations in sws as it was shown before lead to age-dependent neurodegeneration, structure alteration of glia cells, and reduced insect life span. To study SWS functions, we used the system of the third-instar larval neuromuscular junctions of D. melanogaster. In this study, we show that mutations in sws (sws 1 and sws 76−1) and SWS knockdown alter neuromuscular junction's morphology and synaptic microtubules organization.

Research paper thumbnail of Wnt Signaling Specifies Anteroposterior Progenitor Zone Identity in the Drosophila Visual Center

The Journal of neuroscience : the official journal of the Society for Neuroscience, Jun 15, 2016

During brain development, various types of neuronal populations are produced from different proge... more During brain development, various types of neuronal populations are produced from different progenitor pools to produce neuronal diversity that is sufficient to establish functional neuronal circuits. However, the molecular mechanisms that specify the identity of each progenitor pool remain obscure. Here, we show that Wnt signaling is essential for the specification of the identity of posterior progenitor pools in the Drosophila visual center. In the medulla, the largest component of the visual center, different types of neurons are produced from two progenitor pools: the outer proliferation center (OPC) and glial precursor cells (GPCs; also known as tips of the OPC). We found that OPC-type neurons are produced from the GPCs at the expense of GPC-type neurons when Wnt signaling is suppressed in the GPCs. In contrast, GPC-type neurons are ectopically induced when Wnt signaling is ectopically activated in the OPC. These results suggest that Wnt signaling is necessary and sufficient fo...

Research paper thumbnail of N-Cadherin Orchestrates Self-Organization of Neurons within a Columnar Unit in the Drosophila Medulla

The Journal of Neuroscience, 2019

Columnar structure is a basic unit of the brain, but the mechanism underlying its development rem... more Columnar structure is a basic unit of the brain, but the mechanism underlying its development remains largely unknown. The medulla, the largest ganglion of the Drosophila melanogaster visual center, provides a unique opportunity to reveal the mechanisms of 3D organization of the columns. In this study, using N-cadherin (Ncad) as a marker, we reveal the donut-like columnar structures along the 2D layer in the larval medulla that evolves to form three distinct layers in pupal development. Column formation is initiated by three core neurons, R8, R7, and Mi1, which establish distinct concentric domains within a column. We demonstrate that Ncad-dependent relative adhesiveness of the core columnar neurons regulates their relative location within a column along a 2D layer in the larval medulla according to the differential adhesion hypothesis. We also propose the presence of mutual interactions among the three layers during formation of the 3D structures of the medulla columns.

Research paper thumbnail of Kidney organoid research: current status and applications

Current Opinion in Genetics & Development

Research paper thumbnail of Front propagation and intermingling of cell types: experiments versus mathematical model simulations

Different Front propagation or intermingling via cell adhesion strength. Experiments versus model... more Different Front propagation or intermingling via cell adhesion strength. Experiments versus model. Video corresponding to Figure 5.<br>

Research paper thumbnail of Simulation relative to Figure 4 D: Engulfment

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Partial engulfment

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Segregation

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of Simulation relative to Figure 4 D: Mixing

Mixing, partial engulfment, engulfment or segregation via cell adhesion strength

Research paper thumbnail of autosomal-recessive form of HSP ( SPG 39 )

Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced ... more Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced delayed neuropathy (OPIDN) and also one of the genetic factors responsible for the development of the hereditary spastic paraplegia (HSP), characterized by axon degeneration of motoneurons causing progressive lower-limb spastic paralysis. Both HSP and OPIDN are characterized by the distal axonopathy. The molecular mechanisms underlying the axonopathy involved in HSP and OPIDN are poorly understood. In order to have a better understanding of the mechanisms that NTE is involved in, we used one of the homologs, human NTE. Swiss cheese (sws) is a Drosophila melanogaster ortholog of NTE with 39% homology. Mutations in sws as it was shown before lead to age-dependent neurodegeneration, structure alteration of glia cells, and reduced insect life span. To study SWS functions, we used the system of the third-instar larval neuromuscular junctions of D. melanogaster. In this study, we show that mut...

Research paper thumbnail of DWnt4 and DWnt10 Regulate Morphogenesis and Arrangement of Columnar Units via Fz2/PCP Signaling in the Drosophila Brain

Cell Reports, 2020

Highlights d Neurons assemble to establish a column d Planar cell polarity regulates the orientat... more Highlights d Neurons assemble to establish a column d Planar cell polarity regulates the orientation of neurons and columns d Wnt ligands globally regulate neuronal orientation and column arrangement

Research paper thumbnail of Dscam1 establishes the columnar units through lineage-dependent repulsion between sister neurons in the fly brain

Nature Communications, 2020

The brain is organized morphologically and functionally into a columnar structure. According to t... more The brain is organized morphologically and functionally into a columnar structure. According to the radial unit hypothesis, neurons from the same lineage form a radial unit that contributes to column formation. However, the molecular mechanisms that link neuronal lineage and column formation remain elusive. Here, we show that neurons from the same lineage project to different columns under control of Down syndrome cell adhesion molecule (Dscam) in the fly brain. Dscam1 is temporally expressed in newly born neuroblasts and is inherited by their daughter neurons. The transient transcription of Dscam1 in neuroblasts enables the expression of the same Dscam1 splice isoform within cells of the same lineage, causing lineage-dependent repulsion. In the absence of Dscam1 function, neurons from the same lineage project to the same column. When the splice diversity of Dscam1 is reduced, column formation is significantly compromised. Thus, Dscam1 controls column formation through lineage-depen...

Research paper thumbnail of A population dynamics model of cell-cell adhesion incorporating population pressure and density saturation

Journal of Theoretical Biology, 2019

We discuss several continuum cell-cell adhesion models based on the underlying microscopic assump... more We discuss several continuum cell-cell adhesion models based on the underlying microscopic assumptions. We propose an improvement on these models leading to sharp fronts and intermingling invasion fronts between different cell type populations. The model is based on basic principles of localized repulsion and nonlocal attraction due to adhesion forces at the microscopic level. The new model is able to capture both qualitatively and quantitatively experiments by Katsunuma et al. (2016) [J. Cell Biol. 212(5), pp. 561-575]. We also review some of the applications of these models in other areas of tissue growth in developmental biology. We finally explore the resulting qualitative behavior due to cell-cell repulsion.

Research paper thumbnail of Temporal patterning of neurogenesis and neural wiring in the fly visual system

Neuroscience research, Jan 15, 2018

During neural development, a wide variety of neurons are produced in a highly coordinated manner ... more During neural development, a wide variety of neurons are produced in a highly coordinated manner and form complex and highly coordinated neural circuits. Temporal patterning of neuron type specification plays very important roles in orchestrating the production and wiring of neurons. The fly visual system, which is composed of the retina and the optic lobe of the brain, is an outstanding model system to study temporal patterning and wiring of the nervous system. All of the components of the fly visual system are topographically connected, and each ommatidial unit in the retina corresponds to a columnar unit in the optic lobe. In the retina, the wave of differentiation follows the morphogenetic furrow, which progresses in a posterior-to-anterior direction. At the same time, differentiation of the optic lobe also accompanies the wave of differentiation or temporally coordinated neurogenesis. Thus, temporal patterning plays important roles in establishing topographic connections throug...

Research paper thumbnail of Swiss Cheese, Drosophila Ortholog of Hereditary Spastic Paraplegia Gene NTE, Maintains Neuromuscular Junction Development and Microtubule Network

Drosophila melanogaster - Model for Recent Advances in Genetics and Therapeutics, 2018

Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced ... more Neuropathy target esterase (NTE) is a molecular target for the organophosphorus compound-induced delayed neuropathy (OPIDN) and also one of the genetic factors responsible for the development of the hereditary spastic paraplegia (HSP), characterized by axon degeneration of motoneurons causing progressive lower-limb spastic paralysis. Both HSP and OPIDN are characterized by the distal axonopathy. The molecular mechanisms underlying the axonopathy involved in HSP and OPIDN are poorly understood. In order to have a better understanding of the mechanisms that NTE is involved in, we used one of the homologs, human NTE. Swiss cheese (sws) is a Drosophila melanogaster ortholog of NTE with 39% homology. Mutations in sws as it was shown before lead to age-dependent neurodegeneration, structure alteration of glia cells, and reduced insect life span. To study SWS functions, we used the system of the third-instar larval neuromuscular junctions of D. melanogaster. In this study, we show that mutations in sws (sws 1 and sws 76−1) and SWS knockdown alter neuromuscular junction's morphology and synaptic microtubules organization.

Research paper thumbnail of Wnt Signaling Specifies Anteroposterior Progenitor Zone Identity in the Drosophila Visual Center

The Journal of neuroscience : the official journal of the Society for Neuroscience, Jun 15, 2016

During brain development, various types of neuronal populations are produced from different proge... more During brain development, various types of neuronal populations are produced from different progenitor pools to produce neuronal diversity that is sufficient to establish functional neuronal circuits. However, the molecular mechanisms that specify the identity of each progenitor pool remain obscure. Here, we show that Wnt signaling is essential for the specification of the identity of posterior progenitor pools in the Drosophila visual center. In the medulla, the largest component of the visual center, different types of neurons are produced from two progenitor pools: the outer proliferation center (OPC) and glial precursor cells (GPCs; also known as tips of the OPC). We found that OPC-type neurons are produced from the GPCs at the expense of GPC-type neurons when Wnt signaling is suppressed in the GPCs. In contrast, GPC-type neurons are ectopically induced when Wnt signaling is ectopically activated in the OPC. These results suggest that Wnt signaling is necessary and sufficient fo...

Research paper thumbnail of N-Cadherin Orchestrates Self-Organization of Neurons within a Columnar Unit in the Drosophila Medulla

The Journal of Neuroscience, 2019

Columnar structure is a basic unit of the brain, but the mechanism underlying its development rem... more Columnar structure is a basic unit of the brain, but the mechanism underlying its development remains largely unknown. The medulla, the largest ganglion of the Drosophila melanogaster visual center, provides a unique opportunity to reveal the mechanisms of 3D organization of the columns. In this study, using N-cadherin (Ncad) as a marker, we reveal the donut-like columnar structures along the 2D layer in the larval medulla that evolves to form three distinct layers in pupal development. Column formation is initiated by three core neurons, R8, R7, and Mi1, which establish distinct concentric domains within a column. We demonstrate that Ncad-dependent relative adhesiveness of the core columnar neurons regulates their relative location within a column along a 2D layer in the larval medulla according to the differential adhesion hypothesis. We also propose the presence of mutual interactions among the three layers during formation of the 3D structures of the medulla columns.