Paolo Carnier - Academia.edu (original) (raw)

Papers by Paolo Carnier

Zenodo (CERN European Organization for Nuclear Research), Sep 27, 2022

Animal, 2020

Large ham weight losses (WL) in dry-curing are undesired as they lead to a loss of marketable pro... more Large ham weight losses (WL) in dry-curing are undesired as they lead to a loss of marketable product and penalise the quality of the dry-cured ham. The availability of early predictions of WL may ease the adaptation of the dry-curing process to the characteristics of the thighs and increase the effectiveness of selective breeding in enhancing WL. Aims of this study were (i) to develop Bayesian and Random Forests (RFs) regression models for the prediction of ham WL during dry-curing using on-site infrared spectra of raw ham subcutaneous fat, carcass and raw ham traits as predictors and (ii) to estimate genetic parameters for WL and their predictions (P-WL). Visible-near infrared spectra were collected on the transversal section of the subcutaneous fat of raw hams. Carcass traits were carcass weight, carcass backfat depth, lean meat content and weight of raw hams. Raw ham traits included measures of ham subcutaneous fat depth and linear scores for round shape, subcutaneous fat thickness and marbling of the visible muscles of the thigh. Measures of WL were available for 1672 hams. The best prediction accuracies were those of a Bayesian regression model including the average spectrum, carcass and raw ham traits, with R 2 values in validation of 0.46, 0.55 and 0.62, for WL at end of salting (23 days), resting (90 days) and curing (12 months), respectively. When WL at salting was used as an additional predictor of total WL, the R 2 in validation was 0.67. Bayesian regressions were more accurate than RFs models in predicting all the investigated traits. Restricted maximum likelihood (REML) estimates of genetic parameters for WL and P-WL at the end of curing were estimated through a bivariate animal model including 1672 measures of WL and 8819 P-WL records. Results evidenced that the traits are heritable (h 2 ± SE was 0.27 ± 0.04 for WL and 0.39 ± 0.04 for P-WL), and the additive genetic correlation is positive and high (r a = 0.88 ± 0.03). Prediction accuracy of ham WL is high enough to envisage a future use of prediction models in identifying batches of hams requiring an adaptation of the processing conditions to optimise results of the manufacturing process. The positive and high genetic correlation detected between WL and P-WL at the end of dry-curing, as well as the estimated heritability for P-WL, suggests that P-WL can be successfully used as an indicator trait of the measured WL in pig breeding programs.

Journal of Animal Science, Oct 1, 2016

Journal of Animal Science, Sep 1, 2015

The aims of this study were to investigate variation in content of androstenone (AND), skatole (S... more The aims of this study were to investigate variation in content of androstenone (AND), skatole (SKA), and indole (IND), quantified in adipose tissue of intact male pigs at 160 d of age (105 kg BW) and 220 d of age (155 kg BW), to estimate genetic parameters and to investigate the genetic relationships for AND, SKA, IND, and growth traits. A sample of adipose tissue was collected in vivo, using a biopsy device, from the neck of 500 intact males at the 2 ages and at slaughter from the ham of 100 of the investigated animals. Backfat depth was measured at 220 d of age, whereas BW was recorded at each sampling. Quantification of AND, SKA, and IND was performed by HPLC with fluorescence detection. Estimates of genetic parameters were obtained through Bayesian analyses after logarithmic transformations of original measures. Contents of boar taint compounds (BTC) measured at 220 d were higher than those at 160 d of age. Correlations between contents of BTC in backfat and ham fat ranged from 0.7 (IND) to 0.88 (SKA). Medium-high h were estimated for BTC at both ages, but estimates at 220 d (0.58, 0.60, and 0.69 for AND, SKA, and IND, respectively) were greater than those at 160 d. The genetic correlation between contents at 160 and 220 d of each BTC was positive, but the probability that such estimates were greater than 0.8 was very low, indicating that contents at 160 and 220 d were traits controlled by different genetic backgrounds. Different rankings were observed when breeding values for the content at 160 and 220 d of age were used to rank animals. As a consequence, performance testing programs for BTC should be based preferably on phenotypes measured at 220 d of age. Weak genetic correlations were observed between content of BT compounds and growth traits (BW, backfat depth, and daily gain from 160 to 220 d of age), indicating that selective breeding to reduce the risk of tainted pork is expected to exert trivial effects on growth performance and fat deposition. Results indicate that prevalence of BTC is high in mature and heavy pigs relative to young and light pigs. High heritability; positive genetic correlations between AND, SKA, and IND; and trivial effects on growth traits suggest that reduction of BTC through selective breeding is feasible and exploitable as an alternative to surgical castration also for pigs slaughtered at heavy BW.

Animals

Strategies to control boar taint (BT) in meat relies on the reduction of skatole, indole, and and... more Strategies to control boar taint (BT) in meat relies on the reduction of skatole, indole, and androstenone concentration. This might have unfavorable effects on the libido of breeding boars. The association between BT compound concentration in backfat and libido was investigated in 391 commercial breeding boars. Six sexual behavior traits (SBT; sexual arousal, salivation, mounting performance, interest in the dummy sow, penis unsheathing, and overall libido score) were scored during the training of the boars with the dummy sow. Variation in SBT was analyzed by proportional-odds cumulative logistic models. Overall, indole, skatole, and androstenone concentrations were weakly associated with libido. Farm of origin, age at training or body weight, and BT compound levels were poor predictors of boar performance (the area under the ROC curve ranged from 0.60 to 0.69). This indicates that BT compound concentrations were weakly associated with libido, even though the probability of observi...

Animals, Mar 23, 2022

This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY

Animals, 2021

Italian dry-cured ham production requires pigs to be slaughtered at 160 ± 16 kg at 9 months of ag... more Italian dry-cured ham production requires pigs to be slaughtered at 160 ± 16 kg at 9 months of age (control, C). The study explored three alternatives, based on different feeding conditions: (1) allowing pigs to express their growth potential by letting them reach 160 ± 16 kg slaughter weight (SW) at younger slaughter age (SA) (younger Age, YA); (2) allowing pigs to express their growth potential by maximizing their SW at 9 months SA (greater weight, GW); (3) increasing the SA required to reach 160 ± 16 kg SW (older age, OA). Pigs (336 C21 Goland, 95 kg initial body weight) were slaughtered on average at 257, 230, 257, and 273 d SA and 172.7, 172.3, 192.9, and 169.3 SW kg for the four treatments, respectively. C pigs had an average daily gain (ADG) of 715 g/d and feed efficiency (FE) of 0.265 (gain to feed). Compared to C, YA pigs had higher ADG (+32%), FE (+7.5%), and better ham adiposity; GW pigs had higher carcass weight (+12%), ADG (+25%), trimmed ham weight (+10.9%), and better...

Animals, 2022

In European sea bass (Dicentrarchus labrax L.), the viral nervous necrosis mortality (MORT), post... more In European sea bass (Dicentrarchus labrax L.), the viral nervous necrosis mortality (MORT), post-stress cortisol concentration (HC), antibody titer (AT) against nervous necrosis virus and body weight (BW) show significant heritability, which makes selective breeding a possible option for their improvement. An experimental population (N = 650) generated by a commercial broodstock was phenotyped for the aforementioned traits and genotyped with a genome-wide SNP panel (16,075 markers). We compared the predictive accuracies of three Bayesian models (Bayes B, Bayes C and Bayesian Ridge Regression) and a machine-learning method (Random Forest). The prediction accuracy of the EBV for MORT was approximately 0.90, whereas the prediction accuracies of the EBV and the phenotype were 0.86 and 0.21 for HC, 0.79 and 0.26 for AT and 0.71 and 0.38 for BW. The genomic prediction of the EBV for MORT used to classify the phenotype for the same trait showed moderate classification performance. Genome-...

Animal, 2021

Male reproductive performances are often ignored in cattle breeding programmes, although semen tr... more Male reproductive performances are often ignored in cattle breeding programmes, although semen traits might be used to improve bull breeding soundness. Effects of genetic and environmental factors on semen production and quality traits were estimated in 693 Piemontese bulls with the aim of providing the first estimates of genetic parameters for semen traits for this breed. Volume and concentrations of individual ejaculates (up to three per each test-day), and volume, concentration, total number of spermatozoa and post-thawing progressive motility of within test-day pooled semen were available for 19 060 ejaculates. Bulls reached the maximum amount of daily semen production after their third year of age, with concentration rapidly increasing until 23 months of age, and then slowly decreasing. Semen volume was at its highest when collection days were at least 15 days apart, whereas the maximum concentration was reached when the interval was 6 days. Heritability estimates were generally moderate (0.14-0.26), and low for progressive motility (0.08). Estimates of genetic correlation among the volumes of the individual ejaculates were high and positive (≥0.79), as were the genetic correlations among their concentrations (≥0.46). Genetic correlations among volume and concentration traits varied from -0.47 (with a 95% high posterior density interval ranging from -0.65 to -0.23) to -0.32 (with a 95% high posterior density interval ranging from -0.55 to -0.09). Progressive motility was unrelated with the other traits, but moderately positively correlated with volumes of the second and third ejaculates. The magnitude of heritabilities showed that selection for semen traits is possible. However, the unfavourable relationship between volume and concentration must be taken into account if a future selection programme is to be established.

Animals, 2021

Neglecting dominance effects in genetic evaluations may overestimate the predicted genetic respon... more Neglecting dominance effects in genetic evaluations may overestimate the predicted genetic response achievable by a breeding program. Additive and dominance genetic effects were estimated by pedigree-based models for growth, carcass, fresh ham and dry-cured ham seasoning traits in 13,295 crossbred heavy pigs. Variance components estimated by models including litter effects, dominance effects, or both, were compared. Across traits, dominance variance contributed up to 26% of the phenotypic variance and was, on average, 22% of the additive genetic variance. The inclusion of litter, dominance, or both these effects in models reduced the estimated heritability by 9% on average. Confounding was observed among litter, additive genetic and dominance effects. Model fitting improved for models including either the litter or dominance effects, but it did not benefit from the inclusion of both. For 15 traits, model fitting slightly improved when dominance effects were included in place of litt...

Animal, 2021

The quality of subcutaneous fat of raw hams is a trait of interest in selective breeding programs... more The quality of subcutaneous fat of raw hams is a trait of interest in selective breeding programs for pig lines used in dry-cured ham production, and rapid, non-invasive methods for its assessment are available. However, the efficacy of such methods to provide indicator traits for breeding programs needs to be proven. The study investigated the accuracy of on-site visible-near IR spectroscopy predictions of iodine number and fatty acid (FA) composition of raw ham subcutaneous fat, and it evaluated their effectiveness as indicator traits of ham fat quality in a pig breeding program. Prediction equations were developed using visible-near IR spectra acquired at the slaughterhouse from five sites in subcutaneous fat of raw hams of 1025 crossbred pigs. Pigs were raised, under standardized rearing and feeding conditions, in the sib-testing program of the Goland C21 boar line and slaughtered at 9 months of age and average body weight of 166 ± 15 kg. Accuracy was generally relatively poor, but R2 in external validation was >0.7 for iodine number and concentration of C18:2n-6, polyunsaturated FAs and omega-6 FAs. To assess the effectiveness of the on-site predictions as indicator traits in a breeding program, (co)variance components of the measured traits (OBS) and of their predictions using in-lab (in-lab-PR) or on-site (on-site-PR) spectrometers were estimated. Available records for OBS were 6814 and 2048, for iodine number and FA composition, respectively. Predictions using in-lab were available for pigs slaughtered between 2006 and 2014, for a total of 10 153 records. Predictions using on-site were obtained from spectra collected since 2011, for a total of 10 296 records. The estimated heritabilities for the investigated traits ranged from 0.34 to 0.50 and were greater for on-site-PR than for OBS. Genetic correlations between OBS and in-lab-PR were very close to 1.00 for all the investigated traits, whereas those between OBS and on-site-PRED ranged from 0.86 to 0.94. On-site visible-IR predictions are accurate enough to support the use of this technique for large-scale phenotyping of raw ham fat quality, even when dealing with animals of a single genetic line raised in standardized conditions, and may be implemented as indicator traits in breeding programs.

Journal of Dairy Science, 2016

The objective of this study was to evaluate the ability of mid-infrared predictions of fine milk ... more The objective of this study was to evaluate the ability of mid-infrared predictions of fine milk composition and technological traits to serve as a tool for large-scale phenotyping of the Italian Simmental population. Calibration equations accurately predicted the fatty acid profile of the milk, but we obtained moderate or poor accuracy for detailed protein composition, coagulation properties, curd yield and composition, lactoferrin, and concentration of major minerals. To evaluate the role of infrared predictions as indicator traits of fine milk composition in indirect selective breeding programs, the genetic parameters of the traits predicted using mid-infrared spectra need to be estimated.

Contents of casein fractions are known to aff ect coagulation properties and cheese yield of milk... more Contents of casein fractions are known to aff ect coagulation properties and cheese yield of milk, but studies on the eff ects of κ-CN composition on variation of coagulation properties of milk are still very scarce. Eff ects exerted by κ-CN composition on variation of milk coagulation properties (MCP) were investigated using 2,084 individual milk samples of Simmental cows. Rennet coagulation time (RCT), and curd fi rmness (A 30) were measured using a computerized renneting meter. Milk protein composition and genotypes at CSN2, CSN3 and BLG were obtained by reversed-phase HPLC. Th e percentage ratios of κ-CN (κCN%), of Glycosylated-κ-CN (G-κCN%), and Unglycosylated-κ-CN (U-κCN%) to total casein were measured. Th e degree of glycosylation (GD) was measured as the percentage ratio of glycosylated-κ-CN to total κ-CN. A diff erence of 1.7 min (corresponding to 0.37 SD of the trait) was observed for the average RCT of the two extreme classes of κCN% content. RCT decreased when κCN% and G-κCN% increased, whereas U-κCN% exhibited a slightly unfavourable eff ect on the onset of the coagulation process. A slight decrease of RCT was also observed for high GD, although this eff ect was less clear than that of G-κCN%. A favourable eff ect of κCN%, G-κCN% and GD on A 30 was also detected.

Social interactions among animals raised in pens can aff ect their performance. In this study dir... more Social interactions among animals raised in pens can aff ect their performance. In this study direct and competitive models were compared to investigate the infl uence of social genetic eff ects on variation of carcass weight (CW), carcass lean meat content (LM) and ham round shape (RS) in heavy pigs. Four sequential models including, in addition to sex and slaughter group fi xed eff ects, the random eff ects of the social group, litter (full-sibs family), direct and social genetic eff ects of pigs were evaluated. Social group and litter eff ects accounted for about 4 and 3% of the phenotypic variance, respectively. When social genetic eff ects were added to model, a small social heritability was estimated for all traits (from 0.3 to 0.7% of the phenotypic variance). A negative correlation between direct and social eff ects was estimated for LM and RS, reducing the total heritable variance available for selection. Model comparison showed that the best fi t was provided by the model including only direct additive genetic eff ects of pigs. So, this model seems still preferable for the genetic evaluation of the investigated traits.

Meat Science, 2011

Genetic parameters of meat quality (MQ) were estimated on Longissimus thoracis muscle of 1208 Pie... more Genetic parameters of meat quality (MQ) were estimated on Longissimus thoracis muscle of 1208 Piemontese young bulls, progeny of 109 AI sires. Carcass weight (CW), conformation (EUS) and pH (pH24h) were recorded at 24h and lightness (L*), redness (a*), yellowness (b*), pH (pH8d), drip loss (DL), cooking loss (CL) and shear force (SF) were assessed. The heritability (h(2)) of pH24h was very low (0.06), but h2 of pH8d was markedly higher (0.42). Heritability was 0.32, 0.33, and, 0.14, for L*, a* and b*, respectively, whereas was 0.24, 0.07 and 0.14, for DL, CL, and SF, respectively. The two pH measures showed opposite genetic relationships with color measures. Genetic correlations of DL and CL were positive with L* and b* and negative with a*. Genetic correlations between carcass traits and MQ suggest that animals with superior growth potential tend to exhibit reduced EUS scores and pale meat with lower tenderness and water holding capacity. Conversely, improvement of EUS score through selection would lead to light, bright, and tender meat with enhanced water holding capacity.

Zenodo (CERN European Organization for Nuclear Research), Sep 27, 2022

Animal, 2020

Large ham weight losses (WL) in dry-curing are undesired as they lead to a loss of marketable pro... more Large ham weight losses (WL) in dry-curing are undesired as they lead to a loss of marketable product and penalise the quality of the dry-cured ham. The availability of early predictions of WL may ease the adaptation of the dry-curing process to the characteristics of the thighs and increase the effectiveness of selective breeding in enhancing WL. Aims of this study were (i) to develop Bayesian and Random Forests (RFs) regression models for the prediction of ham WL during dry-curing using on-site infrared spectra of raw ham subcutaneous fat, carcass and raw ham traits as predictors and (ii) to estimate genetic parameters for WL and their predictions (P-WL). Visible-near infrared spectra were collected on the transversal section of the subcutaneous fat of raw hams. Carcass traits were carcass weight, carcass backfat depth, lean meat content and weight of raw hams. Raw ham traits included measures of ham subcutaneous fat depth and linear scores for round shape, subcutaneous fat thickness and marbling of the visible muscles of the thigh. Measures of WL were available for 1672 hams. The best prediction accuracies were those of a Bayesian regression model including the average spectrum, carcass and raw ham traits, with R 2 values in validation of 0.46, 0.55 and 0.62, for WL at end of salting (23 days), resting (90 days) and curing (12 months), respectively. When WL at salting was used as an additional predictor of total WL, the R 2 in validation was 0.67. Bayesian regressions were more accurate than RFs models in predicting all the investigated traits. Restricted maximum likelihood (REML) estimates of genetic parameters for WL and P-WL at the end of curing were estimated through a bivariate animal model including 1672 measures of WL and 8819 P-WL records. Results evidenced that the traits are heritable (h 2 ± SE was 0.27 ± 0.04 for WL and 0.39 ± 0.04 for P-WL), and the additive genetic correlation is positive and high (r a = 0.88 ± 0.03). Prediction accuracy of ham WL is high enough to envisage a future use of prediction models in identifying batches of hams requiring an adaptation of the processing conditions to optimise results of the manufacturing process. The positive and high genetic correlation detected between WL and P-WL at the end of dry-curing, as well as the estimated heritability for P-WL, suggests that P-WL can be successfully used as an indicator trait of the measured WL in pig breeding programs.

Journal of Animal Science, Oct 1, 2016

Journal of Animal Science, Sep 1, 2015

The aims of this study were to investigate variation in content of androstenone (AND), skatole (S... more The aims of this study were to investigate variation in content of androstenone (AND), skatole (SKA), and indole (IND), quantified in adipose tissue of intact male pigs at 160 d of age (105 kg BW) and 220 d of age (155 kg BW), to estimate genetic parameters and to investigate the genetic relationships for AND, SKA, IND, and growth traits. A sample of adipose tissue was collected in vivo, using a biopsy device, from the neck of 500 intact males at the 2 ages and at slaughter from the ham of 100 of the investigated animals. Backfat depth was measured at 220 d of age, whereas BW was recorded at each sampling. Quantification of AND, SKA, and IND was performed by HPLC with fluorescence detection. Estimates of genetic parameters were obtained through Bayesian analyses after logarithmic transformations of original measures. Contents of boar taint compounds (BTC) measured at 220 d were higher than those at 160 d of age. Correlations between contents of BTC in backfat and ham fat ranged from 0.7 (IND) to 0.88 (SKA). Medium-high h were estimated for BTC at both ages, but estimates at 220 d (0.58, 0.60, and 0.69 for AND, SKA, and IND, respectively) were greater than those at 160 d. The genetic correlation between contents at 160 and 220 d of each BTC was positive, but the probability that such estimates were greater than 0.8 was very low, indicating that contents at 160 and 220 d were traits controlled by different genetic backgrounds. Different rankings were observed when breeding values for the content at 160 and 220 d of age were used to rank animals. As a consequence, performance testing programs for BTC should be based preferably on phenotypes measured at 220 d of age. Weak genetic correlations were observed between content of BT compounds and growth traits (BW, backfat depth, and daily gain from 160 to 220 d of age), indicating that selective breeding to reduce the risk of tainted pork is expected to exert trivial effects on growth performance and fat deposition. Results indicate that prevalence of BTC is high in mature and heavy pigs relative to young and light pigs. High heritability; positive genetic correlations between AND, SKA, and IND; and trivial effects on growth traits suggest that reduction of BTC through selective breeding is feasible and exploitable as an alternative to surgical castration also for pigs slaughtered at heavy BW.

Animals

Strategies to control boar taint (BT) in meat relies on the reduction of skatole, indole, and and... more Strategies to control boar taint (BT) in meat relies on the reduction of skatole, indole, and androstenone concentration. This might have unfavorable effects on the libido of breeding boars. The association between BT compound concentration in backfat and libido was investigated in 391 commercial breeding boars. Six sexual behavior traits (SBT; sexual arousal, salivation, mounting performance, interest in the dummy sow, penis unsheathing, and overall libido score) were scored during the training of the boars with the dummy sow. Variation in SBT was analyzed by proportional-odds cumulative logistic models. Overall, indole, skatole, and androstenone concentrations were weakly associated with libido. Farm of origin, age at training or body weight, and BT compound levels were poor predictors of boar performance (the area under the ROC curve ranged from 0.60 to 0.69). This indicates that BT compound concentrations were weakly associated with libido, even though the probability of observi...

Animals, Mar 23, 2022

This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY

Animals, 2021

Italian dry-cured ham production requires pigs to be slaughtered at 160 ± 16 kg at 9 months of ag... more Italian dry-cured ham production requires pigs to be slaughtered at 160 ± 16 kg at 9 months of age (control, C). The study explored three alternatives, based on different feeding conditions: (1) allowing pigs to express their growth potential by letting them reach 160 ± 16 kg slaughter weight (SW) at younger slaughter age (SA) (younger Age, YA); (2) allowing pigs to express their growth potential by maximizing their SW at 9 months SA (greater weight, GW); (3) increasing the SA required to reach 160 ± 16 kg SW (older age, OA). Pigs (336 C21 Goland, 95 kg initial body weight) were slaughtered on average at 257, 230, 257, and 273 d SA and 172.7, 172.3, 192.9, and 169.3 SW kg for the four treatments, respectively. C pigs had an average daily gain (ADG) of 715 g/d and feed efficiency (FE) of 0.265 (gain to feed). Compared to C, YA pigs had higher ADG (+32%), FE (+7.5%), and better ham adiposity; GW pigs had higher carcass weight (+12%), ADG (+25%), trimmed ham weight (+10.9%), and better...

Animals, 2022

In European sea bass (Dicentrarchus labrax L.), the viral nervous necrosis mortality (MORT), post... more In European sea bass (Dicentrarchus labrax L.), the viral nervous necrosis mortality (MORT), post-stress cortisol concentration (HC), antibody titer (AT) against nervous necrosis virus and body weight (BW) show significant heritability, which makes selective breeding a possible option for their improvement. An experimental population (N = 650) generated by a commercial broodstock was phenotyped for the aforementioned traits and genotyped with a genome-wide SNP panel (16,075 markers). We compared the predictive accuracies of three Bayesian models (Bayes B, Bayes C and Bayesian Ridge Regression) and a machine-learning method (Random Forest). The prediction accuracy of the EBV for MORT was approximately 0.90, whereas the prediction accuracies of the EBV and the phenotype were 0.86 and 0.21 for HC, 0.79 and 0.26 for AT and 0.71 and 0.38 for BW. The genomic prediction of the EBV for MORT used to classify the phenotype for the same trait showed moderate classification performance. Genome-...

Animal, 2021

Male reproductive performances are often ignored in cattle breeding programmes, although semen tr... more Male reproductive performances are often ignored in cattle breeding programmes, although semen traits might be used to improve bull breeding soundness. Effects of genetic and environmental factors on semen production and quality traits were estimated in 693 Piemontese bulls with the aim of providing the first estimates of genetic parameters for semen traits for this breed. Volume and concentrations of individual ejaculates (up to three per each test-day), and volume, concentration, total number of spermatozoa and post-thawing progressive motility of within test-day pooled semen were available for 19 060 ejaculates. Bulls reached the maximum amount of daily semen production after their third year of age, with concentration rapidly increasing until 23 months of age, and then slowly decreasing. Semen volume was at its highest when collection days were at least 15 days apart, whereas the maximum concentration was reached when the interval was 6 days. Heritability estimates were generally moderate (0.14-0.26), and low for progressive motility (0.08). Estimates of genetic correlation among the volumes of the individual ejaculates were high and positive (≥0.79), as were the genetic correlations among their concentrations (≥0.46). Genetic correlations among volume and concentration traits varied from -0.47 (with a 95% high posterior density interval ranging from -0.65 to -0.23) to -0.32 (with a 95% high posterior density interval ranging from -0.55 to -0.09). Progressive motility was unrelated with the other traits, but moderately positively correlated with volumes of the second and third ejaculates. The magnitude of heritabilities showed that selection for semen traits is possible. However, the unfavourable relationship between volume and concentration must be taken into account if a future selection programme is to be established.

Animals, 2021

Neglecting dominance effects in genetic evaluations may overestimate the predicted genetic respon... more Neglecting dominance effects in genetic evaluations may overestimate the predicted genetic response achievable by a breeding program. Additive and dominance genetic effects were estimated by pedigree-based models for growth, carcass, fresh ham and dry-cured ham seasoning traits in 13,295 crossbred heavy pigs. Variance components estimated by models including litter effects, dominance effects, or both, were compared. Across traits, dominance variance contributed up to 26% of the phenotypic variance and was, on average, 22% of the additive genetic variance. The inclusion of litter, dominance, or both these effects in models reduced the estimated heritability by 9% on average. Confounding was observed among litter, additive genetic and dominance effects. Model fitting improved for models including either the litter or dominance effects, but it did not benefit from the inclusion of both. For 15 traits, model fitting slightly improved when dominance effects were included in place of litt...

Animal, 2021

The quality of subcutaneous fat of raw hams is a trait of interest in selective breeding programs... more The quality of subcutaneous fat of raw hams is a trait of interest in selective breeding programs for pig lines used in dry-cured ham production, and rapid, non-invasive methods for its assessment are available. However, the efficacy of such methods to provide indicator traits for breeding programs needs to be proven. The study investigated the accuracy of on-site visible-near IR spectroscopy predictions of iodine number and fatty acid (FA) composition of raw ham subcutaneous fat, and it evaluated their effectiveness as indicator traits of ham fat quality in a pig breeding program. Prediction equations were developed using visible-near IR spectra acquired at the slaughterhouse from five sites in subcutaneous fat of raw hams of 1025 crossbred pigs. Pigs were raised, under standardized rearing and feeding conditions, in the sib-testing program of the Goland C21 boar line and slaughtered at 9 months of age and average body weight of 166 ± 15 kg. Accuracy was generally relatively poor, but R2 in external validation was >0.7 for iodine number and concentration of C18:2n-6, polyunsaturated FAs and omega-6 FAs. To assess the effectiveness of the on-site predictions as indicator traits in a breeding program, (co)variance components of the measured traits (OBS) and of their predictions using in-lab (in-lab-PR) or on-site (on-site-PR) spectrometers were estimated. Available records for OBS were 6814 and 2048, for iodine number and FA composition, respectively. Predictions using in-lab were available for pigs slaughtered between 2006 and 2014, for a total of 10 153 records. Predictions using on-site were obtained from spectra collected since 2011, for a total of 10 296 records. The estimated heritabilities for the investigated traits ranged from 0.34 to 0.50 and were greater for on-site-PR than for OBS. Genetic correlations between OBS and in-lab-PR were very close to 1.00 for all the investigated traits, whereas those between OBS and on-site-PRED ranged from 0.86 to 0.94. On-site visible-IR predictions are accurate enough to support the use of this technique for large-scale phenotyping of raw ham fat quality, even when dealing with animals of a single genetic line raised in standardized conditions, and may be implemented as indicator traits in breeding programs.

Journal of Dairy Science, 2016

The objective of this study was to evaluate the ability of mid-infrared predictions of fine milk ... more The objective of this study was to evaluate the ability of mid-infrared predictions of fine milk composition and technological traits to serve as a tool for large-scale phenotyping of the Italian Simmental population. Calibration equations accurately predicted the fatty acid profile of the milk, but we obtained moderate or poor accuracy for detailed protein composition, coagulation properties, curd yield and composition, lactoferrin, and concentration of major minerals. To evaluate the role of infrared predictions as indicator traits of fine milk composition in indirect selective breeding programs, the genetic parameters of the traits predicted using mid-infrared spectra need to be estimated.

Contents of casein fractions are known to aff ect coagulation properties and cheese yield of milk... more Contents of casein fractions are known to aff ect coagulation properties and cheese yield of milk, but studies on the eff ects of κ-CN composition on variation of coagulation properties of milk are still very scarce. Eff ects exerted by κ-CN composition on variation of milk coagulation properties (MCP) were investigated using 2,084 individual milk samples of Simmental cows. Rennet coagulation time (RCT), and curd fi rmness (A 30) were measured using a computerized renneting meter. Milk protein composition and genotypes at CSN2, CSN3 and BLG were obtained by reversed-phase HPLC. Th e percentage ratios of κ-CN (κCN%), of Glycosylated-κ-CN (G-κCN%), and Unglycosylated-κ-CN (U-κCN%) to total casein were measured. Th e degree of glycosylation (GD) was measured as the percentage ratio of glycosylated-κ-CN to total κ-CN. A diff erence of 1.7 min (corresponding to 0.37 SD of the trait) was observed for the average RCT of the two extreme classes of κCN% content. RCT decreased when κCN% and G-κCN% increased, whereas U-κCN% exhibited a slightly unfavourable eff ect on the onset of the coagulation process. A slight decrease of RCT was also observed for high GD, although this eff ect was less clear than that of G-κCN%. A favourable eff ect of κCN%, G-κCN% and GD on A 30 was also detected.

Social interactions among animals raised in pens can aff ect their performance. In this study dir... more Social interactions among animals raised in pens can aff ect their performance. In this study direct and competitive models were compared to investigate the infl uence of social genetic eff ects on variation of carcass weight (CW), carcass lean meat content (LM) and ham round shape (RS) in heavy pigs. Four sequential models including, in addition to sex and slaughter group fi xed eff ects, the random eff ects of the social group, litter (full-sibs family), direct and social genetic eff ects of pigs were evaluated. Social group and litter eff ects accounted for about 4 and 3% of the phenotypic variance, respectively. When social genetic eff ects were added to model, a small social heritability was estimated for all traits (from 0.3 to 0.7% of the phenotypic variance). A negative correlation between direct and social eff ects was estimated for LM and RS, reducing the total heritable variance available for selection. Model comparison showed that the best fi t was provided by the model including only direct additive genetic eff ects of pigs. So, this model seems still preferable for the genetic evaluation of the investigated traits.

Meat Science, 2011

Genetic parameters of meat quality (MQ) were estimated on Longissimus thoracis muscle of 1208 Pie... more Genetic parameters of meat quality (MQ) were estimated on Longissimus thoracis muscle of 1208 Piemontese young bulls, progeny of 109 AI sires. Carcass weight (CW), conformation (EUS) and pH (pH24h) were recorded at 24h and lightness (L*), redness (a*), yellowness (b*), pH (pH8d), drip loss (DL), cooking loss (CL) and shear force (SF) were assessed. The heritability (h(2)) of pH24h was very low (0.06), but h2 of pH8d was markedly higher (0.42). Heritability was 0.32, 0.33, and, 0.14, for L*, a* and b*, respectively, whereas was 0.24, 0.07 and 0.14, for DL, CL, and SF, respectively. The two pH measures showed opposite genetic relationships with color measures. Genetic correlations of DL and CL were positive with L* and b* and negative with a*. Genetic correlations between carcass traits and MQ suggest that animals with superior growth potential tend to exhibit reduced EUS scores and pale meat with lower tenderness and water holding capacity. Conversely, improvement of EUS score through selection would lead to light, bright, and tender meat with enhanced water holding capacity.