Charalampos Pappas - Academia.edu (original) (raw)

Papers by Charalampos Pappas

Nature Nanotechnology, 2016

Langmuir, Jun 9, 2014

We demonstrate the self-assembly of bola-amphiphile-type conjugates of dipeptides and perylene bi... more We demonstrate the self-assembly of bola-amphiphile-type conjugates of dipeptides and perylene bisimide (PBI) in water and other polar solvents. Depending on the nature of the peptide used (glycine-tyrosine, GY, or glycine-aspartic acid, GD), the balance between H-bonding and aromatic stacking can be tailored. In aqueous buffer, PBI-[GY]2 forms chiral nanofibers, resulting in the formation of a hydrogel, while for PBI-[GD]2 achiral spherical aggregates are formed, demonstrating that the peptide sequence has a profound effect on the structure formed. In water and a range of other polar solvents, self-assembly of these two PBI-peptides conjugates results in different nanostructures with highly tunable fluorescence performance depending on the peptide sequence employed, e.g., fluorescent emission and quantum yield. Organogels are formed for the PBI-[GD]2 derivative in DMF and DMSO while PBI-[GY]2 gels in DMF. To the best of our knowledge, this is the first successful strategy for using short peptides, specifically, their sequence/structure relationships, to manipulate the PBI nanostructure and consequent optical properties. The combination of controlled self-assembly, varied optical properties, and formation of aqueous and organic gel-phase materials may facilitate the design of devices for various applications related to light harvesting and sensing.

Angewandte Chemie, 2015

Structural adaption in living systems is achieved by competing catalytic pathways that drive asse... more Structural adaption in living systems is achieved by competing catalytic pathways that drive assembly and disassembly of molecular components under the influence of chemical fuels. We report on a simple mimic of such a system that displays transient, sequence-dependent formation of supramolecular nanostructures based on biocatalytic formation and hydrolysis of self-assembling tripeptides. The systems are catalyzed by α-chymotrypsin and driven by hydrolysis of dipeptide aspartyl-phenylalanine-methyl ester (the sweetener aspartame, DF-OMe). We observed switch-like pathway selection, with the kinetics and consequent lifetime of transient nanostructures controlled by the peptide sequence. In direct competition, kinetic (rather than thermodynamic) component selection is observed.

Journal of Amino Acids, 2012

is properly cited. 2 D, 13 C, 14 N, and 17 O NMR and crystallographic data from the literature we... more is properly cited. 2 D, 13 C, 14 N, and 17 O NMR and crystallographic data from the literature were critically evaluated in order to provide a coherent hydration model of amino acids and selected derivatives at different ionization states. 17 O shielding variations, longitudinal relaxation times (T 1 ) of 2 D and 13 C and line widths (Δν 1/2 ) of 14 N and 17 O, may be interpreted with the hypothesis that the cationic form of amino acids is more hydrated by 1 to 3 molecules of water than the zwitterionic form. Similar behaviour was also observed for N-acetylated derivatives of amino acids. An exhaustive search in crystal structure databases demonstrates the importance of six-membered hydrogen-bonded conjugated rings of both oxygens of the α-carboxylate group with a molecule of water in the vicinity. This type of hydrogen bond mode is absent in the case of the carboxylic groups. Moreover, a considerable number of structures was identified with the propensity to form intramolecular hydrogen bond both in the carboxylic acid (NH· · · O=C) and in the carboxylate (NH · · · O − ) ionization state. In the presence of bound molecules of water this interaction is significantly reduced in the case of the carboxylate group whereas it is statistically negligible in the carboxylic group.

Nature Chemistry, 2014

Peptides that self-assemble into nanostructures are of tremendous interest for biological, medica... more Peptides that self-assemble into nanostructures are of tremendous interest for biological, medical, photonic and nanotechnological applications. The enormous sequence space that is available from 20 amino acids probably harbours many interesting candidates, but it is currently not possible to predict supramolecular behaviour from sequence alone. Here, we demonstrate computational tools to screen for the aqueous self-assembly propensity in all of the 8,000 possible tripeptides and evaluate these by comparison with known examples. We applied filters to select for candidates that simultaneously optimize the apparently contradicting requirements of aggregation propensity and hydrophilicity, which resulted in a set of design rules for self-assembling sequences. A number of peptides were subsequently synthesized and characterized, including the first reported tripeptides that are able to form a hydrogel at neutral pH. These tools, which enable the peptide sequence space to be searched for supramolecular properties, enable minimalistic peptide nanotechnology to deliver on its promise.

ACS Nano, 2014

We demonstrate the use of dipeptide amphiphiles that, by hand shaking of a biphasic solvent syste... more We demonstrate the use of dipeptide amphiphiles that, by hand shaking of a biphasic solvent system for a few seconds, form emulsions that remain stable for months through the formation of nanofibrous networks at the organic/aqueous interface. Unlike absorption of traditional surfactants, the interfacial networks form by self-assembly through π-stacking interactions and hydrogen bonding. Altering the dipeptide sequence has a dramatic effect on the properties of the emulsions formed, illustrating the possibility of tuning emulsion properties by chemical design. The systems provide superior long-term stability toward temperature and salts compared to with sodium dodecyl sulfate (SDS) and can be enzymatically disassembled causing on-demand demulsification under mild conditions. The interfacial networks facilitate highly tunable and stable encapsulation and compartmentalization with potential applications in cosmetics, therapeutics, and food industry.

ACS Chemical Biology, 2014

GPCR subtypes possess distinct functional and pharmacological profiles, and thus development of s... more GPCR subtypes possess distinct functional and pharmacological profiles, and thus development of subtype-selective ligands has immense therapeutic potential. This is especially the case for the angiotensin receptor subtypes AT1R and AT2R, where a functional negative control has been described and AT2R activation highlighted as an important cancer drug target. We describe a strategy to fine-tune ligand selectivity for the AT2R/AT1R subtypes through electronic control of ligand aromatic-prolyl interactions. Through this strategy an AT2R high affinity (Ki = 3 nM) agonist analogue that exerted 18,000-fold higher selectivity for AT2R versus AT1R was obtained. We show that this compound is a negative regulator of AT1R signaling since it is able to inhibit MCF-7 breast carcinoma cellular proliferation in the low nanomolar range.

Nature chemistry, 2015

Chemical Communications, 2014

Supramolecular structures were produced by in situ enzymatic condensation of Fmoc-Phe-(4-X), wher... more Supramolecular structures were produced by in situ enzymatic condensation of Fmoc-Phe-(4-X), where X denotes electron withdrawing or donating groups, with Phe-NH 2 . The relative contribution of p-stacking and H-bonding interactions can be regulated by the nature of X, resulting in tuneable nanoscale morphologies.

Langmuir : the ACS journal of surfaces and colloids, 2014

Bioconjugate Chemistry, 2014

Gemcitabine, a drug with established efficacy against a number of solid tumors, has therapeutic l... more Gemcitabine, a drug with established efficacy against a number of solid tumors, has therapeutic limitations due to its rapid metabolic inactivation. The aim of this study was the development of an innovative strategy to produce a metabolically stable analogue of gemcitabine that could also be selectively delivered to prostate cancer (CaP) cells based on cell surface expression of the Gonadotropin Releasing Hormone-Receptor (GnRH-R). The synthesis and evaluation of conjugated molecules, consisting of gemcitabine linked to a GnRH agonist, is presented along with results in androgen-independent prostate cancer models. NMR and ligand binding assays were employed to verify conservation of microenvironments responsible for binding of novel GnRH-gemcitabine conjugates to the GnRH-R. In vitro cytotoxicity, cellular uptake, and metabolite formation of the conjugates were examined in CaP cell lines. Selected conjugates were efficacious in the in vitro assays with one of them, namely, GSG, displaying high antiproliferative activity in CaP cell lines along with significant metabolic and pharmacokinetic advantages in comparison to gemcitabine. Finally, treatment of GnRH-R positive xenografted mice with GSG showed a significant advantage in tumor growth inhibition when compared to gemcitabine.