Pere Palmer Rodríguez - Academia.edu (original) (raw)
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Papers by Pere Palmer Rodríguez
bioRxiv (Cold Spring Harbor Laboratory), May 17, 2024
<p>The nodes in this graph are the MBBs in the reaction graph of the purine metabolism path... more <p>The nodes in this graph are the MBBs in the reaction graph of the purine metabolism pathway in <i>Homo sapiens</i>. Yellow nodes denote MBBs with only one reaction, while grey nodes denote MBBs with more than one reaction.</p
<p>This figure shows the glycolysis reference m-DAG associated to the glycolysis reference ... more <p>This figure shows the glycolysis reference m-DAG associated to the glycolysis reference pathway in the KEGG database. We again show the relation between the MBBs and their corresponding reactions over the reference glycolysis pathway depicted on the left.</p
<p>This figure shows the purine metabolism reference m-DAG associated to the purine metabol... more <p>This figure shows the purine metabolism reference m-DAG associated to the purine metabolism reference pathway in the KEGG database.</p
<p>This figure shows the kingdom reference m-DAGs obtained for the six kingdoms as well as ... more <p>This figure shows the kingdom reference m-DAGs obtained for the six kingdoms as well as their relation with the reference m-DAG in the center of the figure.</p
<p>This figure shows the m-DAGs of six organisms, one in each kingdom and their relation wi... more <p>This figure shows the m-DAGs of six organisms, one in each kingdom and their relation with the reference m-DAG (in the center). The two MBBs in the reference m-DAG with more than one reaction are depicted in green and blue. With the corresponding color (green or blue) in the background, we show the inclusion of the MBBs of every organism into the MBBs in the reference m-DAG.</p
<p>MBBs that discriminate the kingdoms in the purine metabolism pathway.</p
<p>It shows the reaction graph corresponding to the metabolic pathway depicted on the left ... more <p>It shows the reaction graph corresponding to the metabolic pathway depicted on the left side of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.g004" target="_blank">Fig 4</a>. The nodes in this graph are the reactions of the pathway, depicted in blue nodes are the reverse of a reversible reaction and in yellow the reaction itself.</p
Sensors
Distributed Embedded Systems (DESs) carrying out critical tasks must be highly reliable and hard ... more Distributed Embedded Systems (DESs) carrying out critical tasks must be highly reliable and hard in real-time. Moreover, to operate in dynamic operational contexts in an effective and efficient manner, they must also be adaptive. Adaptivity is particularly interesting from a dependability perspective, as it can be used to develop dynamic fault tolerance mechanisms, which, in combination with static ones, make it possible to provide better and more efficient fault tolerance. However, constructing a DES with such complexity presents many challenges. This is because all the mechanisms that support fault tolerance, real-time, and adaptivity must be designed to operate in a coordinated manner. This paper presents the Dynamic Fault Tolerance for Flexible Time-Triggered Ethernet (DFT4FTT), a self-reconfigurable infrastructure for implementing highly reliable adaptive DES. Here, we describe the design of its hardware and software architecture and the main set of mechanisms, with a focus on ...
<p>This figure shows the dendrogram obtained with the hierarchical clustering of the purine... more <p>This figure shows the dendrogram obtained with the hierarchical clustering of the purine metabolism pathway. Red, green, brown, grey, dark blue and light blue labels are m-DAG in Animalia, Plantae, Fungi, Protista, Bacteria and Archaea, respectively. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.s030" target="_blank">S16 Fig</a> we provide the vectorial format of this image for a better visualization.</p
<p>This figure shows the dendrogram obtained with the hierarchical clustering of the glycol... more <p>This figure shows the dendrogram obtained with the hierarchical clustering of the glycolysis pathway. Red, green, brown, grey, dark blue and light blue labels are m-DAGs in Animalia, Plantae, Fungi, Protista, Bacteria and Archaea, respectively. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.s029" target="_blank">S15 Fig</a> we provide the vectorial format of this image for a better visualization.</p
<p>Collection of the MBBs in the reaction graph of the glycolysis in <i>Homo sapiens&... more <p>Collection of the MBBs in the reaction graph of the glycolysis in <i>Homo sapiens</i>.</p
<p>Classification of the eighteen species without reaction <i>R</i>00200.</p
<p>Enzymes and reactions that discriminate the kingdoms in the glycolysis pathway.</p
<p>On the right is depicted the m-DAG corresponding to the <i>Homo sapiens</i> ... more <p>On the right is depicted the m-DAG corresponding to the <i>Homo sapiens</i> glycolysis pathway. For every MBB we show their corresponding reactions over the glycolysis pathway depicted on the left, as it is shown in the KEGG database.</p
<p>Enzymes and reactions that discriminate the kingdoms in the purine metabolism pathway.&l... more <p>Enzymes and reactions that discriminate the kingdoms in the purine metabolism pathway.</p
<p>It shows the relation between the reaction graph corresponding to the glycolysis pathway... more <p>It shows the relation between the reaction graph corresponding to the glycolysis pathway in <i>Homo sapiens</i> and its corresponding m-DAG. The m-DAG has seven nodes which are the corresponding MBBs in the reaction graph. Notice that three of them are yellow nodes, that is, a MBB with only one reaction, and four of them are grey nodes which are MBBs with more than one reaction. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.t001" target="_blank">Table 1</a> we list the reactions in every MBB.</p
Damos la bienvenida a todos los participantes a los eventos CTVDI 2015 VI Congreso de Television ... more Damos la bienvenida a todos los participantes a los eventos CTVDI 2015 VI Congreso de Television Digital Interactiva y jAUTI2015 IV Jornadas Iberoamericanas de difusion y capacitacion sobre Aplicaciones y Usabilidad de la Television Digital Interactiva, que este ano se han realizado de forma conjunta en Palma de Mallorca gracias al esfuerzo de los organizadores de ambos eventos. La edicion del ano 2015 ha sido, sin duda, una gran oportunidad para que investigadores, docentes, profesionales, especialistas, empresas y estudiantes compartan unos dias de convivencia que les han permitido intercambiar proyectos, ideas, soluciones, investigaciones y experiencias en las diferentes areas del congreso, especialmente en usabilidad, TV social, movilidad, rendimiento y segunda pantalla como temas actuales, ademas de muchisimas mas lineas de investigacion y desarrollo, como se refleja en las actas del congreso. Tambien cabe mencionar que este encuentro ha servido para crear nuevos lazos entre gr...
Actualmente puede constatarse que el uso de las TIC para realizar la gestión de los viajes por pa... more Actualmente puede constatarse que el uso de las TIC para realizar la gestión de los viajes por parte de los turistas es una realidad. A tal fin existen múltiples herramientas que permiten la organización previa del viaje y valoración del mismo una vez concluido, sin embargo hay muy pocas que asistan al viajero durante su estancia en destino. Durante la realización del viaje el turista necesita poder ubicar los lugares que para él tengan un especial interés que estén próximos al lugar en donde se encuentre de forma rápida y cómoda, por ejemplo mediante el uso de dispositivos móviles y de localización geográfica. También es importante que los recorridos que se propongan se adapten a las necesidades del turista en el momento y lugar concretos. El Laboratorio de Tecnologías de la Información Multimedia ha desarrollado una herramienta de localización geográfica a través de teléfonos móviles que permite al turista conocer en todo momento la situación en la que se encuentra y los atractivo...
bioRxiv (Cold Spring Harbor Laboratory), May 17, 2024
<p>The nodes in this graph are the MBBs in the reaction graph of the purine metabolism path... more <p>The nodes in this graph are the MBBs in the reaction graph of the purine metabolism pathway in <i>Homo sapiens</i>. Yellow nodes denote MBBs with only one reaction, while grey nodes denote MBBs with more than one reaction.</p
<p>This figure shows the glycolysis reference m-DAG associated to the glycolysis reference ... more <p>This figure shows the glycolysis reference m-DAG associated to the glycolysis reference pathway in the KEGG database. We again show the relation between the MBBs and their corresponding reactions over the reference glycolysis pathway depicted on the left.</p
<p>This figure shows the purine metabolism reference m-DAG associated to the purine metabol... more <p>This figure shows the purine metabolism reference m-DAG associated to the purine metabolism reference pathway in the KEGG database.</p
<p>This figure shows the kingdom reference m-DAGs obtained for the six kingdoms as well as ... more <p>This figure shows the kingdom reference m-DAGs obtained for the six kingdoms as well as their relation with the reference m-DAG in the center of the figure.</p
<p>This figure shows the m-DAGs of six organisms, one in each kingdom and their relation wi... more <p>This figure shows the m-DAGs of six organisms, one in each kingdom and their relation with the reference m-DAG (in the center). The two MBBs in the reference m-DAG with more than one reaction are depicted in green and blue. With the corresponding color (green or blue) in the background, we show the inclusion of the MBBs of every organism into the MBBs in the reference m-DAG.</p
<p>MBBs that discriminate the kingdoms in the purine metabolism pathway.</p
<p>It shows the reaction graph corresponding to the metabolic pathway depicted on the left ... more <p>It shows the reaction graph corresponding to the metabolic pathway depicted on the left side of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.g004" target="_blank">Fig 4</a>. The nodes in this graph are the reactions of the pathway, depicted in blue nodes are the reverse of a reversible reaction and in yellow the reaction itself.</p
Sensors
Distributed Embedded Systems (DESs) carrying out critical tasks must be highly reliable and hard ... more Distributed Embedded Systems (DESs) carrying out critical tasks must be highly reliable and hard in real-time. Moreover, to operate in dynamic operational contexts in an effective and efficient manner, they must also be adaptive. Adaptivity is particularly interesting from a dependability perspective, as it can be used to develop dynamic fault tolerance mechanisms, which, in combination with static ones, make it possible to provide better and more efficient fault tolerance. However, constructing a DES with such complexity presents many challenges. This is because all the mechanisms that support fault tolerance, real-time, and adaptivity must be designed to operate in a coordinated manner. This paper presents the Dynamic Fault Tolerance for Flexible Time-Triggered Ethernet (DFT4FTT), a self-reconfigurable infrastructure for implementing highly reliable adaptive DES. Here, we describe the design of its hardware and software architecture and the main set of mechanisms, with a focus on ...
<p>This figure shows the dendrogram obtained with the hierarchical clustering of the purine... more <p>This figure shows the dendrogram obtained with the hierarchical clustering of the purine metabolism pathway. Red, green, brown, grey, dark blue and light blue labels are m-DAG in Animalia, Plantae, Fungi, Protista, Bacteria and Archaea, respectively. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.s030" target="_blank">S16 Fig</a> we provide the vectorial format of this image for a better visualization.</p
<p>This figure shows the dendrogram obtained with the hierarchical clustering of the glycol... more <p>This figure shows the dendrogram obtained with the hierarchical clustering of the glycolysis pathway. Red, green, brown, grey, dark blue and light blue labels are m-DAGs in Animalia, Plantae, Fungi, Protista, Bacteria and Archaea, respectively. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.s029" target="_blank">S15 Fig</a> we provide the vectorial format of this image for a better visualization.</p
<p>Collection of the MBBs in the reaction graph of the glycolysis in <i>Homo sapiens&... more <p>Collection of the MBBs in the reaction graph of the glycolysis in <i>Homo sapiens</i>.</p
<p>Classification of the eighteen species without reaction <i>R</i>00200.</p
<p>Enzymes and reactions that discriminate the kingdoms in the glycolysis pathway.</p
<p>On the right is depicted the m-DAG corresponding to the <i>Homo sapiens</i> ... more <p>On the right is depicted the m-DAG corresponding to the <i>Homo sapiens</i> glycolysis pathway. For every MBB we show their corresponding reactions over the glycolysis pathway depicted on the left, as it is shown in the KEGG database.</p
<p>Enzymes and reactions that discriminate the kingdoms in the purine metabolism pathway.&l... more <p>Enzymes and reactions that discriminate the kingdoms in the purine metabolism pathway.</p
<p>It shows the relation between the reaction graph corresponding to the glycolysis pathway... more <p>It shows the relation between the reaction graph corresponding to the glycolysis pathway in <i>Homo sapiens</i> and its corresponding m-DAG. The m-DAG has seven nodes which are the corresponding MBBs in the reaction graph. Notice that three of them are yellow nodes, that is, a MBB with only one reaction, and four of them are grey nodes which are MBBs with more than one reaction. In <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0177031#pone.0177031.t001" target="_blank">Table 1</a> we list the reactions in every MBB.</p
Damos la bienvenida a todos los participantes a los eventos CTVDI 2015 VI Congreso de Television ... more Damos la bienvenida a todos los participantes a los eventos CTVDI 2015 VI Congreso de Television Digital Interactiva y jAUTI2015 IV Jornadas Iberoamericanas de difusion y capacitacion sobre Aplicaciones y Usabilidad de la Television Digital Interactiva, que este ano se han realizado de forma conjunta en Palma de Mallorca gracias al esfuerzo de los organizadores de ambos eventos. La edicion del ano 2015 ha sido, sin duda, una gran oportunidad para que investigadores, docentes, profesionales, especialistas, empresas y estudiantes compartan unos dias de convivencia que les han permitido intercambiar proyectos, ideas, soluciones, investigaciones y experiencias en las diferentes areas del congreso, especialmente en usabilidad, TV social, movilidad, rendimiento y segunda pantalla como temas actuales, ademas de muchisimas mas lineas de investigacion y desarrollo, como se refleja en las actas del congreso. Tambien cabe mencionar que este encuentro ha servido para crear nuevos lazos entre gr...
Actualmente puede constatarse que el uso de las TIC para realizar la gestión de los viajes por pa... more Actualmente puede constatarse que el uso de las TIC para realizar la gestión de los viajes por parte de los turistas es una realidad. A tal fin existen múltiples herramientas que permiten la organización previa del viaje y valoración del mismo una vez concluido, sin embargo hay muy pocas que asistan al viajero durante su estancia en destino. Durante la realización del viaje el turista necesita poder ubicar los lugares que para él tengan un especial interés que estén próximos al lugar en donde se encuentre de forma rápida y cómoda, por ejemplo mediante el uso de dispositivos móviles y de localización geográfica. También es importante que los recorridos que se propongan se adapten a las necesidades del turista en el momento y lugar concretos. El Laboratorio de Tecnologías de la Información Multimedia ha desarrollado una herramienta de localización geográfica a través de teléfonos móviles que permite al turista conocer en todo momento la situación en la que se encuentra y los atractivo...