Robert Thorpe - Academia.edu (original) (raw)
Papers by Robert Thorpe
Marine Ecology Progress Series, 2021
Climate change is affecting large-scale oceanic processes. How and when these changes will impact... more Climate change is affecting large-scale oceanic processes. How and when these changes will impact those reliant on marine resources is not yet clear. Here we use end-to-end modeling to track the impacts of expected changes through the marine ecosystem on a specific, small community: Cochamó, in the Gulf of Ancud wider area, Chile. This area is important for Chilean fisheries and aquaculture, with Cochamó reliant on both lower and upper trophic level marine resources. We applied the GOTM-ERSEM-BFM coupled hydro-biogeochemical water-column model to gauge lower-trophic level marine ecological community response to bottom-up stressors (climate change, ocean acidification), coupled to an existing Ecopath with Ecosim model for the area, which included top-down stressors (fishing). Social scientists also used participatory modeling (Systems Thinking and Bayesian Belief Networking) to identify key resources for Cochamó residents and to assess the community’s vulnerability to possible change...
Progress in Oceanography, 2020
Atmospheric Chemistry and Physics, 2012
Ecological Indicators
Ecosystem-based management is mandated by international legislation, including the Marine Strateg... more Ecosystem-based management is mandated by international legislation, including the Marine Strategy Framework Directive (MSFD) in the EU. This introduces a requirement for marine environments to achieve "Good Environmental Status" or GES, implying that the ecosystem is in a healthy and biodiverse state which does not limit the management options of future generations. Indicators of GES typically refer to the current or past state; however, an alternative approach that defines GES in terms of being able to recover to the appropriate reference unperturbed state within 30 years if human activities cease has been suggested. In this study we evaluate this "longest recovery timescales" (LRT) approach using the StrathE2E2 "big picture" model, an end-to-end ecosystem model designed to evaluate both top-down and bottom-up effects at an ecosystem level. We ask whether the approach is enough to prevent severe depletion as well as ensuring recovery at some future time. We also ask whether implementation is practical given uncertainties in defining appropriate baselines for recovery, defining what recovery looks like relative to this baseline, and taking account of natural variability. We find that the main issues with implementation of LRT are a) defining the appropriate baseline for recovery in a changing environment, and b) ensuring that there is stakeholder acceptance of any recommended actions in the event that they differ substantially from current policy. Subject to these two issues, we conclude that the LRT method is a valuable addition to management in support of achieving GES alongside existing methods that focus on current or near-future states.
ICES Journal of Marine Science
Multispecies models have existed in a fisheries context since at least the 1970s, but despite muc... more Multispecies models have existed in a fisheries context since at least the 1970s, but despite much exploration, advancement, and consideration of multispecies models, there remain limited examples of their operational use in fishery management. Given that species and fleet interactions are inherently multispecies problems and the push towards ecosystem-based fisheries management, the lack of more regular operational use is both surprising and compelling. We identify impediments hampering the regular operational use of multispecies models and provide recommendations to address those impediments. These recommendations are: (1) engage stakeholders and managers early and often; (2) improve messaging and communication about the various uses of multispecies models; (3) move forward with multispecies management under current authorities while exploring more inclusive governance structures and flexible decision-making frameworks for handling tradeoffs; (4) evaluate when a multispecies model...
Frontiers in Marine Science
Understanding change at the base of the marine foodwebs is fundamental to understanding how clima... more Understanding change at the base of the marine foodwebs is fundamental to understanding how climate change can impact fisheries. However, there is a shortage of empirical measurements of primary productivity, and models estimates often disagree with each other by an order of magnitude or more. In this study we incorporate information from empirical studies and a suite of Earth system models statistically downscaled using an ensemble model to produce estimates of North Sea primary production with robust quantification of uncertainties under two different climate scenarios. The results give a synthesised estimate of primary production that can feed into regional fisheries models. We found that Earth system models describe the dynamics of primary production in the North Sea poorly, and therefore the effects of climate change on future primary production are uncertain. The methods demonstrated here can be applied to other geographical locations and are not limited in application to prim...
26 When making predictions about ecosystems, we often have available a number of 27 different eco... more 26 When making predictions about ecosystems, we often have available a number of 27 different ecosystem models that attempt to represent their dynamics in a detailed 28 mechanistic way. Each of these can be used as a simulator of large-scale experiments 29 and make projections about the fate of ecosystems under different scenarios in or30 der to support the development of appropriate management strategies. However, 31 structural differences, systematic discrepancies and uncertainties lead to different 32 models giving different predictions. This is further complicated by the fact that the 33 models may not be run with the same functional groups, spatial structure or time 34 scale. Rather than simply trying to select a ‘best’ model, or taking some weighted 35 average, it is important to exploit the strengths of each of the models, while learn36 ing from the differences between them. To achieve this, we construct a flexible 37 statistical model of the relationships between a collectio...
arXiv: Quantitative Methods, 2017
When making predictions about ecosystems, we often have available a number of different ecosystem... more When making predictions about ecosystems, we often have available a number of different ecosystem models that attempt to represent their dynamics in a detailed mechanistic way. Each of these can be used as simulators of large-scale experiments and make forecasts about the fate of ecosystems under different scenarios in order to support the development of appropriate management strategies. However, structural differences, systematic discrepancies and uncertainties lead to different models giving different predictions under these scenarios. This is further complicated by the fact that the models may not be run with the same species or functional groups, spatial structure or time scale. Rather than simply trying to select a 'best' model, or taking some weighted average, it is important to exploit the strengths of each of the available models, while learning from the differences between them. To achieve this, we construct a flexible statistical model of the relationships between...
Frontiers in Marine Science
Achieving Good Environmental Status (GES) requires managing ecosystems subject to a variety of pr... more Achieving Good Environmental Status (GES) requires managing ecosystems subject to a variety of pressures such as climate change, eutrophication, and fishing. However, ecosystem models are generally much better at representing top-down impacts from fishing than bottom-up impacts due to warming or changes in nutrient loading. Bottom-up processes often have to be parameterised with little data or worse still taken as a system input rather than being represented explicitly. In this study we use an end-to-end ecosystem model (StrathE2E2) for the North Sea with 18 broad functional groups, five resource pools, and representations of feeding, metabolism, reproduction, active migrations, advection, and mixing. Environmental driving data include temperature, irradiance, hydrodynamics, and nutrient inputs from rivers, atmosphere, and ocean boundaries, so the model is designed to evaluate rigorously top-down and bottom-up impacts and is ideal for looking at possible changes in energy flows and ...
Frontiers in Marine Science, 2021
Fish communities are multispecies assemblages, so ideally multispecies models should be used dire... more Fish communities are multispecies assemblages, so ideally multispecies models should be used directly for assessing this resource. However, progress in this direction has been slow, partly because these models are often more complex and take longer to fit, rendering them too slow to demonstrate near-real-time utility, and thus creating a perception that they are opaque to stakeholders. In this study we implemented a multispecies assessment for the Irish Sea, fitting a model of eight key stocks directly to catch and survey data. Two novel features of our approach allowed the multispecies model to be fitted within a few hours. Firstly, by using size-based theory and life-history invariants to specify many of the required properties of stocks, we reduced the number of general parameters that needed to be fitted directly to a more manageable 25. Secondly, by using state-of-the-art fitting methods, we found acceptable solutions quickly enough to provide assessments within the timescale o...
ICES Journal of Marine Science, 2019
Maximum sustainable yield (MSY) is a well-established concept that is mandated by legislation, an... more Maximum sustainable yield (MSY) is a well-established concept that is mandated by legislation, and has a clear theoretical meaning in terms of a single stock. However, its definition is problematic in a multispecies setting, which makes it more difficult to apply the MSY principle. In this study of the North Sea fish community, we consider several possible MSY candidates, and evaluate them in terms of their ability to produce optimum long-term yield whilst avoiding unacceptable risk of stock impairment. We perform this evaluation with an ensemble of size-structured models using a management strategy evaluation approach, in which harvest control rules (HCRs) are used to determine levels of fishing as a function of the proposed MSY target and stock status, taking account of recruitment and model parameter uncertainties. We find that HCRs of the type considered here are always useful in the scenarios we tested, as they reduce overfishing risk much more than average long-term yield. Thi...
Ecological Modelling, 2016
Interim Report of the Working Group on Multispecies Assessment Methods (WGSAM): 21-25 October 201... more Interim Report of the Working Group on Multispecies Assessment Methods (WGSAM): 21-25 October 2013, Stockholm, Sweden
Geophysical Research Letters, 2005
Weather, 2002
ABSTRACT No abstract is available for this article.
Marine Ecology Progress Series, 2021
Climate change is affecting large-scale oceanic processes. How and when these changes will impact... more Climate change is affecting large-scale oceanic processes. How and when these changes will impact those reliant on marine resources is not yet clear. Here we use end-to-end modeling to track the impacts of expected changes through the marine ecosystem on a specific, small community: Cochamó, in the Gulf of Ancud wider area, Chile. This area is important for Chilean fisheries and aquaculture, with Cochamó reliant on both lower and upper trophic level marine resources. We applied the GOTM-ERSEM-BFM coupled hydro-biogeochemical water-column model to gauge lower-trophic level marine ecological community response to bottom-up stressors (climate change, ocean acidification), coupled to an existing Ecopath with Ecosim model for the area, which included top-down stressors (fishing). Social scientists also used participatory modeling (Systems Thinking and Bayesian Belief Networking) to identify key resources for Cochamó residents and to assess the community’s vulnerability to possible change...
Progress in Oceanography, 2020
Atmospheric Chemistry and Physics, 2012
Ecological Indicators
Ecosystem-based management is mandated by international legislation, including the Marine Strateg... more Ecosystem-based management is mandated by international legislation, including the Marine Strategy Framework Directive (MSFD) in the EU. This introduces a requirement for marine environments to achieve "Good Environmental Status" or GES, implying that the ecosystem is in a healthy and biodiverse state which does not limit the management options of future generations. Indicators of GES typically refer to the current or past state; however, an alternative approach that defines GES in terms of being able to recover to the appropriate reference unperturbed state within 30 years if human activities cease has been suggested. In this study we evaluate this "longest recovery timescales" (LRT) approach using the StrathE2E2 "big picture" model, an end-to-end ecosystem model designed to evaluate both top-down and bottom-up effects at an ecosystem level. We ask whether the approach is enough to prevent severe depletion as well as ensuring recovery at some future time. We also ask whether implementation is practical given uncertainties in defining appropriate baselines for recovery, defining what recovery looks like relative to this baseline, and taking account of natural variability. We find that the main issues with implementation of LRT are a) defining the appropriate baseline for recovery in a changing environment, and b) ensuring that there is stakeholder acceptance of any recommended actions in the event that they differ substantially from current policy. Subject to these two issues, we conclude that the LRT method is a valuable addition to management in support of achieving GES alongside existing methods that focus on current or near-future states.
ICES Journal of Marine Science
Multispecies models have existed in a fisheries context since at least the 1970s, but despite muc... more Multispecies models have existed in a fisheries context since at least the 1970s, but despite much exploration, advancement, and consideration of multispecies models, there remain limited examples of their operational use in fishery management. Given that species and fleet interactions are inherently multispecies problems and the push towards ecosystem-based fisheries management, the lack of more regular operational use is both surprising and compelling. We identify impediments hampering the regular operational use of multispecies models and provide recommendations to address those impediments. These recommendations are: (1) engage stakeholders and managers early and often; (2) improve messaging and communication about the various uses of multispecies models; (3) move forward with multispecies management under current authorities while exploring more inclusive governance structures and flexible decision-making frameworks for handling tradeoffs; (4) evaluate when a multispecies model...
Frontiers in Marine Science
Understanding change at the base of the marine foodwebs is fundamental to understanding how clima... more Understanding change at the base of the marine foodwebs is fundamental to understanding how climate change can impact fisheries. However, there is a shortage of empirical measurements of primary productivity, and models estimates often disagree with each other by an order of magnitude or more. In this study we incorporate information from empirical studies and a suite of Earth system models statistically downscaled using an ensemble model to produce estimates of North Sea primary production with robust quantification of uncertainties under two different climate scenarios. The results give a synthesised estimate of primary production that can feed into regional fisheries models. We found that Earth system models describe the dynamics of primary production in the North Sea poorly, and therefore the effects of climate change on future primary production are uncertain. The methods demonstrated here can be applied to other geographical locations and are not limited in application to prim...
26 When making predictions about ecosystems, we often have available a number of 27 different eco... more 26 When making predictions about ecosystems, we often have available a number of 27 different ecosystem models that attempt to represent their dynamics in a detailed 28 mechanistic way. Each of these can be used as a simulator of large-scale experiments 29 and make projections about the fate of ecosystems under different scenarios in or30 der to support the development of appropriate management strategies. However, 31 structural differences, systematic discrepancies and uncertainties lead to different 32 models giving different predictions. This is further complicated by the fact that the 33 models may not be run with the same functional groups, spatial structure or time 34 scale. Rather than simply trying to select a ‘best’ model, or taking some weighted 35 average, it is important to exploit the strengths of each of the models, while learn36 ing from the differences between them. To achieve this, we construct a flexible 37 statistical model of the relationships between a collectio...
arXiv: Quantitative Methods, 2017
When making predictions about ecosystems, we often have available a number of different ecosystem... more When making predictions about ecosystems, we often have available a number of different ecosystem models that attempt to represent their dynamics in a detailed mechanistic way. Each of these can be used as simulators of large-scale experiments and make forecasts about the fate of ecosystems under different scenarios in order to support the development of appropriate management strategies. However, structural differences, systematic discrepancies and uncertainties lead to different models giving different predictions under these scenarios. This is further complicated by the fact that the models may not be run with the same species or functional groups, spatial structure or time scale. Rather than simply trying to select a 'best' model, or taking some weighted average, it is important to exploit the strengths of each of the available models, while learning from the differences between them. To achieve this, we construct a flexible statistical model of the relationships between...
Frontiers in Marine Science
Achieving Good Environmental Status (GES) requires managing ecosystems subject to a variety of pr... more Achieving Good Environmental Status (GES) requires managing ecosystems subject to a variety of pressures such as climate change, eutrophication, and fishing. However, ecosystem models are generally much better at representing top-down impacts from fishing than bottom-up impacts due to warming or changes in nutrient loading. Bottom-up processes often have to be parameterised with little data or worse still taken as a system input rather than being represented explicitly. In this study we use an end-to-end ecosystem model (StrathE2E2) for the North Sea with 18 broad functional groups, five resource pools, and representations of feeding, metabolism, reproduction, active migrations, advection, and mixing. Environmental driving data include temperature, irradiance, hydrodynamics, and nutrient inputs from rivers, atmosphere, and ocean boundaries, so the model is designed to evaluate rigorously top-down and bottom-up impacts and is ideal for looking at possible changes in energy flows and ...
Frontiers in Marine Science, 2021
Fish communities are multispecies assemblages, so ideally multispecies models should be used dire... more Fish communities are multispecies assemblages, so ideally multispecies models should be used directly for assessing this resource. However, progress in this direction has been slow, partly because these models are often more complex and take longer to fit, rendering them too slow to demonstrate near-real-time utility, and thus creating a perception that they are opaque to stakeholders. In this study we implemented a multispecies assessment for the Irish Sea, fitting a model of eight key stocks directly to catch and survey data. Two novel features of our approach allowed the multispecies model to be fitted within a few hours. Firstly, by using size-based theory and life-history invariants to specify many of the required properties of stocks, we reduced the number of general parameters that needed to be fitted directly to a more manageable 25. Secondly, by using state-of-the-art fitting methods, we found acceptable solutions quickly enough to provide assessments within the timescale o...
ICES Journal of Marine Science, 2019
Maximum sustainable yield (MSY) is a well-established concept that is mandated by legislation, an... more Maximum sustainable yield (MSY) is a well-established concept that is mandated by legislation, and has a clear theoretical meaning in terms of a single stock. However, its definition is problematic in a multispecies setting, which makes it more difficult to apply the MSY principle. In this study of the North Sea fish community, we consider several possible MSY candidates, and evaluate them in terms of their ability to produce optimum long-term yield whilst avoiding unacceptable risk of stock impairment. We perform this evaluation with an ensemble of size-structured models using a management strategy evaluation approach, in which harvest control rules (HCRs) are used to determine levels of fishing as a function of the proposed MSY target and stock status, taking account of recruitment and model parameter uncertainties. We find that HCRs of the type considered here are always useful in the scenarios we tested, as they reduce overfishing risk much more than average long-term yield. Thi...
Ecological Modelling, 2016
Interim Report of the Working Group on Multispecies Assessment Methods (WGSAM): 21-25 October 201... more Interim Report of the Working Group on Multispecies Assessment Methods (WGSAM): 21-25 October 2013, Stockholm, Sweden
Geophysical Research Letters, 2005
Weather, 2002
ABSTRACT No abstract is available for this article.