Shih-che Sue - Academia.edu (original) (raw)

Papers by Shih-che Sue

Research paper thumbnail of Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain

Research paper thumbnail of Challenges in NMR-based structural genomics

Physica D: Nonlinear Phenomena, May 1, 2005

Research paper thumbnail of 1H, 13C, and 15N Resonance Assignments of the Hath-Domain of Hepatoma-derived Growth Factor

Research paper thumbnail of Domain-Swapped Dimer of the PWWP Module of Human Hepatoma-derived Growth Factor

Research paper thumbnail of Crystal structure of human CCL5 trimer

Research paper thumbnail of Predicted CP probabilities (CPred scores) for <i>Npu</i> DnaE (NpuInt), <i>Ssp</i> DnaE and <i>Ssp</i> DnaB inteins (<i>Npu: Nostoc punctiforme</i> and <i>Ssp: Synechchotcystis sp.</i>) plotted <i>versus</i> residue number

Research paper thumbnail of High Level Expression and Purification of Cecropin-like Antimicrobial Peptides in Escherichia coli

Biomedicines

Cecropins are a family of antimicrobial peptides (AMPs) that are widely found in the innate immun... more Cecropins are a family of antimicrobial peptides (AMPs) that are widely found in the innate immune system of Cecropia moths. Cecropins exhibit a broad spectrum of antimicrobial and anticancer activities. The structures of Cecropins are composed of 34–39 amino acids with an N-terminal amphipathic α-helix, an AGP hinge and a hydrophobic C-terminal α-helix. KR12AGPWR6 was designed based on the Cecropin-like structural feature. In addition to its antimicrobial activities, KR12AGPWR6 also possesses enhanced salt resistance, antiendotoxin and anticancer properties. Herein, we have developed a strategy to produce recombinant KR12AGPWR6 through a salt-sensitive, pH and temperature dependent intein self-cleavage system. The His6-Intein-KR12AGPWR6 was expressed by E. coli and KR12AGPWR6 was released by the self-cleavage of intein under optimized ionic strength, pH and temperature conditions. The molecular weight and structural feature of the recombinant KR12AGPWR6 was determined by MALDI-TOF ...

Research paper thumbnail of Author's personal copy Transfer of Flexibility between Ankyrin Repeats in IκBα upon Formation of the NF-κB Complex

This article appeared in a journal published by Elsevier. The attached copy is furnished to the a... more This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit:

Research paper thumbnail of Available online

This article appeared in a journal published by Elsevier. The attached copy is furnished to the a... more This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit:

Research paper thumbnail of Dynamics of IkBa Probed by NMR

Research paper thumbnail of Salt-sensitive intein for large-scale polypeptide production

Methods in Enzymology, 2019

In this chapter, we propose to use salt-sensitive intein as a fusion protein to promote polypepti... more In this chapter, we propose to use salt-sensitive intein as a fusion protein to promote polypeptide expression; the removal of intein from the target sequence requires no enzyme, only a buffer change. The method will be particularly helpful for large-scale polypeptide preparations. Intein is an enzyme that can perform N- and C-terminal self-cleavage. Upon introduction of a mutation to eliminate the N-terminal cleavage activity, the C-terminal cleavage function can still be preserved. This feature was used to develop intein as a fusion protein through conjugation with a given sequence to promote protein expression in a biosynthesis system. Fused intein could later be separated from the target sequence through a C-terminal self-cleavage reaction. Here, a type of salt-sensitive intein is characterized in which ionic strength becomes an effector to control the self-cleavage activity. Low salt concentrations favor the cleavage reaction. Thus, using salt-sensitive intein as a fusion protein simply requires a buffer change to activate the self-cleavage mechanism, which makes it an enzyme-free process. This process has many advantages, including low cost, no extra residue remaining after cleavage, feasibility for preparing proteins starting from a non-Met codon and a special benefit for producing isotope-labeled peptides.

Research paper thumbnail of Utilization of HEPES for Enhancing Protein Transfection into Mammalian Cells

Molecular Therapy - Methods & Clinical Development, 2019

Research paper thumbnail of Heparin Binding Stabilizes the Membrane-bound Form of Cobra Cardiotoxin

Journal of Biological Chemistry, 2001

Research paper thumbnail of Functional Dynamics of the Folded Ankyrin Repeats of IκBα Revealed by Nuclear Magnetic Resonance

Research paper thumbnail of Type IIb Heat Labile Enterotoxin B Subunit as a Mucosal Adjuvant to Enhance Protective Immunity against H5N1 Avian Influenza Viruses

Vaccines, 2020

Human infections with highly pathogenic avian influenza H5N1 viruses persist as a major global he... more Human infections with highly pathogenic avian influenza H5N1 viruses persist as a major global health concern. Vaccination remains the primary protective strategy against H5N1 and other novel avian influenza virus infections. We investigated the use of E. coli type IIb heat labile enterotoxin B subunit (LTIIb-B5) as a mucosal adjuvant for intranasal immunizations with recombinant HA proteins against H5N1 avian influenza viruses. Use of LTIIb-B5 adjuvant elicited more potent IgG, IgA, and neutralizing antibody titers in both sera and bronchoalveolar lavage fluids, thus increasing protection against lethal virus challenges. LTIIb-B5 mucosal adjuvanticity was found to trigger stronger Th17 cellular response in spleen lymphocytes and cervical lymph nodes. Studies of anti-IL-17A monoclonal antibody depletion and IL-17A knockout mice also suggest the contribution from Th17 cellular response to anti-H5N1 protective immunity. Our results indicate a link between improved protection against H...

Research paper thumbnail of 1H and 13C Chemical Shift Assignments for Cardiotoxin A3 from Naja Atra at Neutral pH

Research paper thumbnail of Anti-apoptotic BCL-2 regulation by changes in dynamics of its long unstructured loop

Communications Biology, 2020

BCL-2, a key protein in inhibiting apoptosis, has a 65-residue-long highly flexible loop domain (... more BCL-2, a key protein in inhibiting apoptosis, has a 65-residue-long highly flexible loop domain (FLD) located on the opposite side of its ligand-binding groove. In vivo phosphorylation of the FLD enhances the affinity of BCL-2 for pro-apoptotic ligands, and consequently anti-apoptotic activity. However, it remains unknown as to how the faraway, unstructured FLD modulates the affinity. Here we investigate the protein-ligand interactions by fluorescence techniques and monitor protein dynamics by DEER and NMR spectroscopy tools. We show that phosphomimetic mutations on the FLD lead to a reduction in structural flexibility, hence promoting ligand access to the groove. The bound pro-apoptotic ligands can be displaced by the BCL-2-selective inhibitor ABT-199 efficiently, and thus released to trigger apoptosis. We show that changes in structural flexibility on an unstructured loop can activate an allosteric protein that is otherwise structurally inactive.

Research paper thumbnail of Structure of the SARS Coronavirus Nucleocapsid Protein RNA-binding Dimerization Domain Suggests a Mechanism for Helical Packaging of Viral RNA

Journal of Molecular Biology, 2007

Research paper thumbnail of Modular organization of SARS coronavirus nucleocapsid protein

Journal of Biomedical Science, 2005

Research paper thumbnail of Alternative C-Terminal Helix Orientation Alters Chemokine Function

Journal of Biological Chemistry, 2013

Research paper thumbnail of Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain

Research paper thumbnail of Challenges in NMR-based structural genomics

Physica D: Nonlinear Phenomena, May 1, 2005

Research paper thumbnail of 1H, 13C, and 15N Resonance Assignments of the Hath-Domain of Hepatoma-derived Growth Factor

Research paper thumbnail of Domain-Swapped Dimer of the PWWP Module of Human Hepatoma-derived Growth Factor

Research paper thumbnail of Crystal structure of human CCL5 trimer

Research paper thumbnail of Predicted CP probabilities (CPred scores) for <i>Npu</i> DnaE (NpuInt), <i>Ssp</i> DnaE and <i>Ssp</i> DnaB inteins (<i>Npu: Nostoc punctiforme</i> and <i>Ssp: Synechchotcystis sp.</i>) plotted <i>versus</i> residue number

Research paper thumbnail of High Level Expression and Purification of Cecropin-like Antimicrobial Peptides in Escherichia coli

Biomedicines

Cecropins are a family of antimicrobial peptides (AMPs) that are widely found in the innate immun... more Cecropins are a family of antimicrobial peptides (AMPs) that are widely found in the innate immune system of Cecropia moths. Cecropins exhibit a broad spectrum of antimicrobial and anticancer activities. The structures of Cecropins are composed of 34–39 amino acids with an N-terminal amphipathic α-helix, an AGP hinge and a hydrophobic C-terminal α-helix. KR12AGPWR6 was designed based on the Cecropin-like structural feature. In addition to its antimicrobial activities, KR12AGPWR6 also possesses enhanced salt resistance, antiendotoxin and anticancer properties. Herein, we have developed a strategy to produce recombinant KR12AGPWR6 through a salt-sensitive, pH and temperature dependent intein self-cleavage system. The His6-Intein-KR12AGPWR6 was expressed by E. coli and KR12AGPWR6 was released by the self-cleavage of intein under optimized ionic strength, pH and temperature conditions. The molecular weight and structural feature of the recombinant KR12AGPWR6 was determined by MALDI-TOF ...

Research paper thumbnail of Author's personal copy Transfer of Flexibility between Ankyrin Repeats in IκBα upon Formation of the NF-κB Complex

This article appeared in a journal published by Elsevier. The attached copy is furnished to the a... more This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit:

Research paper thumbnail of Available online

This article appeared in a journal published by Elsevier. The attached copy is furnished to the a... more This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit:

Research paper thumbnail of Dynamics of IkBa Probed by NMR

Research paper thumbnail of Salt-sensitive intein for large-scale polypeptide production

Methods in Enzymology, 2019

In this chapter, we propose to use salt-sensitive intein as a fusion protein to promote polypepti... more In this chapter, we propose to use salt-sensitive intein as a fusion protein to promote polypeptide expression; the removal of intein from the target sequence requires no enzyme, only a buffer change. The method will be particularly helpful for large-scale polypeptide preparations. Intein is an enzyme that can perform N- and C-terminal self-cleavage. Upon introduction of a mutation to eliminate the N-terminal cleavage activity, the C-terminal cleavage function can still be preserved. This feature was used to develop intein as a fusion protein through conjugation with a given sequence to promote protein expression in a biosynthesis system. Fused intein could later be separated from the target sequence through a C-terminal self-cleavage reaction. Here, a type of salt-sensitive intein is characterized in which ionic strength becomes an effector to control the self-cleavage activity. Low salt concentrations favor the cleavage reaction. Thus, using salt-sensitive intein as a fusion protein simply requires a buffer change to activate the self-cleavage mechanism, which makes it an enzyme-free process. This process has many advantages, including low cost, no extra residue remaining after cleavage, feasibility for preparing proteins starting from a non-Met codon and a special benefit for producing isotope-labeled peptides.

Research paper thumbnail of Utilization of HEPES for Enhancing Protein Transfection into Mammalian Cells

Molecular Therapy - Methods & Clinical Development, 2019

Research paper thumbnail of Heparin Binding Stabilizes the Membrane-bound Form of Cobra Cardiotoxin

Journal of Biological Chemistry, 2001

Research paper thumbnail of Functional Dynamics of the Folded Ankyrin Repeats of IκBα Revealed by Nuclear Magnetic Resonance

Research paper thumbnail of Type IIb Heat Labile Enterotoxin B Subunit as a Mucosal Adjuvant to Enhance Protective Immunity against H5N1 Avian Influenza Viruses

Vaccines, 2020

Human infections with highly pathogenic avian influenza H5N1 viruses persist as a major global he... more Human infections with highly pathogenic avian influenza H5N1 viruses persist as a major global health concern. Vaccination remains the primary protective strategy against H5N1 and other novel avian influenza virus infections. We investigated the use of E. coli type IIb heat labile enterotoxin B subunit (LTIIb-B5) as a mucosal adjuvant for intranasal immunizations with recombinant HA proteins against H5N1 avian influenza viruses. Use of LTIIb-B5 adjuvant elicited more potent IgG, IgA, and neutralizing antibody titers in both sera and bronchoalveolar lavage fluids, thus increasing protection against lethal virus challenges. LTIIb-B5 mucosal adjuvanticity was found to trigger stronger Th17 cellular response in spleen lymphocytes and cervical lymph nodes. Studies of anti-IL-17A monoclonal antibody depletion and IL-17A knockout mice also suggest the contribution from Th17 cellular response to anti-H5N1 protective immunity. Our results indicate a link between improved protection against H...

Research paper thumbnail of 1H and 13C Chemical Shift Assignments for Cardiotoxin A3 from Naja Atra at Neutral pH

Research paper thumbnail of Anti-apoptotic BCL-2 regulation by changes in dynamics of its long unstructured loop

Communications Biology, 2020

BCL-2, a key protein in inhibiting apoptosis, has a 65-residue-long highly flexible loop domain (... more BCL-2, a key protein in inhibiting apoptosis, has a 65-residue-long highly flexible loop domain (FLD) located on the opposite side of its ligand-binding groove. In vivo phosphorylation of the FLD enhances the affinity of BCL-2 for pro-apoptotic ligands, and consequently anti-apoptotic activity. However, it remains unknown as to how the faraway, unstructured FLD modulates the affinity. Here we investigate the protein-ligand interactions by fluorescence techniques and monitor protein dynamics by DEER and NMR spectroscopy tools. We show that phosphomimetic mutations on the FLD lead to a reduction in structural flexibility, hence promoting ligand access to the groove. The bound pro-apoptotic ligands can be displaced by the BCL-2-selective inhibitor ABT-199 efficiently, and thus released to trigger apoptosis. We show that changes in structural flexibility on an unstructured loop can activate an allosteric protein that is otherwise structurally inactive.

Research paper thumbnail of Structure of the SARS Coronavirus Nucleocapsid Protein RNA-binding Dimerization Domain Suggests a Mechanism for Helical Packaging of Viral RNA

Journal of Molecular Biology, 2007

Research paper thumbnail of Modular organization of SARS coronavirus nucleocapsid protein

Journal of Biomedical Science, 2005

Research paper thumbnail of Alternative C-Terminal Helix Orientation Alters Chemokine Function

Journal of Biological Chemistry, 2013