Suprio Ghosh - Academia.edu (original) (raw)

Papers by Suprio Ghosh

Research paper thumbnail of Mining candidate genes underlying seed oil content using BSA-seq in soybean

Industrial Crops and Products, Apr 1, 2023

Research paper thumbnail of Effect of seasonal and environmental variation on yield and yield components of hybrid Maize

International Journal of Agricultural Research, Innovation and Technology, Mar 20, 2015

The experiment was conducted during kharif II in 2006 & 07, rabi in 2006-07 & 07-08 and kharif I ... more The experiment was conducted during kharif II in 2006 & 07, rabi in 2006-07 & 07-08 and kharif I in 2007 and 2008 at ARS, Burirhat, Rangpur in RCB design to understand the influence of season and location specific environment effect on growth and yield of hybrid maize and selected suitable variety(s). Four hybrid maize varieties V1=BARI hybrid Maize (BHM)-2, V2=BHM-3, V3= BHM-5 and V4= Pacific-984 (as check) were tested during kharif

Research paper thumbnail of Improvement of potato based cropping patterns by inclusion of short duration Mungbean and T. Aman rice in Monga prone areas of Rangpur

International Journal of Agricultural Research, Innovation and Technology, Mar 20, 2015

The experiment was carried out to compare the improved cropping patterns against the farmers exis... more The experiment was carried out to compare the improved cropping patterns against the farmers existing potato based cropping patterns having no mungbean/brown manure crop for higher yield, economic return and income generation in agricultural field in the off period following RCBD design with three replications at farmer's field at Paikan Gangachara, Rangpur district during September-October. The treatments (cropping patterns) were T1 = T. aman rice (BINA 7)-Potato-Mungbean (BARI mungbean 6) (Improved pattern), T2 = T. aman rice (BR11)-Potato-Fallow (Farmers pattern), T3 = T. aman rice (BINA 7)-Potato + Maize intercrop-Mungbean (Improved pattern) and T4 = T. aman rice (BR11)-Potato / Maize relay (Farmers pattern). The highest yield (4.16 t ha-1) was recorded in T2 (BR11) which is statistically at par with T4 (4.15 t ha-1) but higher than the other treatments. Early planting sole potato (T1) gave highest yield (26.10 t ha-1) which was significantly higher than all other treatments. Late planting sole potato (T2), intercropped early potato (T3) and relay potato (T4) showed similar yield (23.61-24.79 t ha-1). Intercropped (T3) and Relay (T4) maize did not vary significantly in the studied parameters and yields were 8.21 and 7.92 t ha-1 , respectively. Mungbean after sole potato (T1) gave higher number of pods/plant (17.25), and yield (1.47 t ha-1) which is significantly higher than those of T3 (14.89 and 1.28 t ha-1 , respectively). Highest gross return (GR) (Tk. 417720) and gross margin (GM) (Tk. 220220) were calculated in improved pattern T3 and the lowest of those (Tk. 289670, Tk. 146020) in farmers pattern T2. The other improved pattern T3 was the second highest performer considering GR and GM. But BCR (2.21) was highest in T1 and second highest in T3. The results indicated that the improved patterns (T1, T3) were better than farmers pattern (T2, T4). The improved pattern (T1) gave GR Tk. 67890 and GM Tk. 51785 higher than farmers pattern (T2). Similarly, the other improved pattern (T3) showed Tk. 51870 and Tk. 37395 higher than farmers pattern (T4). The improved pattern T1 and T3 created 45 working day job for the labour for harvesting early matured rice in the Monga/ jobless period (October) while farmers' pattern gives only 3 days work. The mungbean included improved cropping patterns can be suggested for increased production, economic return and Monga mitigation (work opportunity in off period) in Rangpur.

Research paper thumbnail of Variability and heritability analysis in F4 genotypes of Brassica rapa L

Bangladesh Journal of Agricultural Research, Sep 12, 2014

Bangladesh to study variability in 10 F 4 lines obtained through intervarietal crosses along with... more Bangladesh to study variability in 10 F 4 lines obtained through intervarietal crosses along with 8 released varieties of Brassica rapa. Significant variation was observed among all the genotypes for all the characters studied. Considering genetic parameters high genotypic coefficient of variation (GCV) was observed for number of secondary branches per plant, siliquae per plant, yield per plant, whereas days to maturity showed very low GCV. High heritability with low genetic advance in percent of mean was observed for days to maturity which indicated that non-additive gene effects were involved for the expression of this character and selection for such trait might not be rewarding. High heritability with moderate genetic advance in percent of mean was observed for plant height and days to 50% flowering indicating that this trait was under additive gene control and selection for genetic improvement for this trait would be effective. Considering, inter genotypic variability, heritability, and genetic advance, % coefficient of variation and other agronomic performance G 2 , G 14 , G 18 , G 1 , G 9 , G 12 , G 16 , G 17 may be considered to be better parents for future uses in hybridization programme.

Research paper thumbnail of Mining candidate genes underlying seed oil content using BSA-seq in soybean

Industrial Crops and Products

Research paper thumbnail of Origin, Maturity Group and Seed Coat Color Influence Carotenoid and Chlorophyll Concentrations in Soybean Seeds

Plants

Soybean (Glycine max (L.) Merrill) seeds are abundant in physiologically active metabolites, incl... more Soybean (Glycine max (L.) Merrill) seeds are abundant in physiologically active metabolites, including carotenoids and chlorophylls, and are used as an affordable source of functional foods that promote and maintain human health. The distribution and variation of soybean seed metabolites are influenced by plant genetic characteristics and environmental factors. Here, we investigated the effects of germplasm origin, genotype, seed coat color and maturity group (MG) on the concentration variation of carotenoid and chlorophyll components in 408 soybean germplasm accessions collected from China, Japan, the USA and Russia. The results showed that genotype, germplasm origin, seed color, and MG were significant variation sources of carotenoid and chlorophyll contents in soybean seeds. The total carotenoids showed about a 25-fold variation among the soybean germplasms, with an overall mean of 12.04 µg g−1. Russian soybeans yielded 1.3-fold higher total carotenoids compared with Chinese and ...

Research paper thumbnail of Natural Variation of Seed Tocopherol Composition in Diverse World Soybean Accessions from Maturity Group 0 to VI Grown in China

Plants

Tocopherols are natural antioxidants that increase the stability of fat-containing foods and are ... more Tocopherols are natural antioxidants that increase the stability of fat-containing foods and are well known for their health benefits. To investigate the variation in seed tocopherol composition of soybeans from different origins, 493 soybean accessions from different countries (China, USA, Japan, and Russia) belonging to 7 maturity groups (MG 0–VI) were grown in 2 locations (Beijing and Hainan Provinces of China) for 2 years (2017 and 2018). The results showed that significant differences (p < 0.001) were observed among the accessions and origins for individual and total tocopherol contents. The total tocopherol content ranged from 118.92 μg g−1 to 344.02 μg g−1. Accessions from the USA had the highest average concentration of γ- and total tocopherols (152.92 and 238.21 μg g−1, respectively), whereas a higher level of α-tocopherol (12.82 μg g−1) was observed in the Russian accessions. The maturity group of the accession significantly (p < 0.001) influenced all tocopherol comp...

Research paper thumbnail of Identification of Genomic Loci and Candidate Genes Related to Seed Tocopherol Content in Soybean

Plants

Soybean seeds are primary sources of natural tocopherols used by the food and pharmaceutical indu... more Soybean seeds are primary sources of natural tocopherols used by the food and pharmaceutical industries, owing to their beneficial impacts on human health. Selection for higher tocopherol contents in seeds along with other desirable traits is an important goal in soybean breeding. In order to identify the genomic loci and candidate genes controlling tocopherol content in soybean seeds, the bulked-segregant analysis technique was performed using a natural population of soybean consisting of 1525 accessions. We constructed the bulked-segregant analysis based on 98 soybean accessions that showed extreme phenotypic variation for the target trait, consisting of 49 accessions with extremely-high and 49 accessions with extremely-low tocopherol content. A total of 144 variant sites and 109 predicted genes related to tocopherol content were identified, in which a total of 83 genes were annotated by the gene ontology functions. Furthermore, 13 enriched terms (p < 0.05) were detected, with ...

Research paper thumbnail of Profiling seed soluble sugar compositions in 1164 Chinese soybean accessions from major growing ecoregions

Research paper thumbnail of Profiling of naturally occurring folates in a diverse soybean germplasm by HPLC-MS/MS

Food Chemistry, 2022

Soybean is a rich source of folates. We optimised the extraction and detection of folates from so... more Soybean is a rich source of folates. We optimised the extraction and detection of folates from soybean seeds by HPLC-MS/MS and analysed the folate content and composition of 1074 accessions. Total folate content ranged from 64.51 to 691.24 μg/100 g fresh weight, with 10-fold variation, and 60 elite accessions with over 400 μg/100 g of total folate were identified. The most abundant component was 5-CHO-H4folate, which accounted for an average of 60% of total folate content. Seed-coat colour, seed weight, ecoregion, and accession type significantly affected soybean folate content. Furthermore, 5-CH3-H4folate correlated positively with seed protein (r = 0.24***) and negatively with oil (r = -0.26***). The geographical distribution of folate according to accession origin revealed that accessions from Northeast China contain higher amounts of total folate and 5-CHO-H4folate. This study provides comprehensive and novel insights into the folate profile of soybean, which will benefit soybean breeding for folate enhancement.

Research paper thumbnail of Simultaneous Determination of Carotenoids and Chlorophylls by the HPLC-UV-VIS Method in Soybean Seeds

Agronomy, 2021

Soybean contains nutritional bioactive compounds, including carotenoids associated with human hea... more Soybean contains nutritional bioactive compounds, including carotenoids associated with human health benefits. Carotenoids are applicable in pharmaceuticals/nutreceuticals, cosmetic, and mainly food industries. However, an efficient and accurate method for carotenoid and chlorophyll detection and quantification has not yet been developed and validated for soybean seeds. The need for a rapid and reliable analysis method has become increasingly important. Thus, this study was initiated to develop and validate a simple, rapid, and selective reversed-phase high-performance liquid chromatographic (RP-HPLC) method for the simultaneous determination of lutein, zeaxanthin, α-carotene, β–carotene, β–cryptoxanthin, and chlorophyll–a and –b in soybean flour sample (100.00 mg) extracted using ethanol-acetone (1:1) solvents at a volume of 1.50 mL. Interestingly, the effective separation technique was achieved using the mobile phases of methyl tert-butyl ether, methanol containing 10 mM ammonium ...

Research paper thumbnail of Seed tocopherol assessment and geographical distribution of 1151 Chinese soybean accessions from diverse ecoregions

Journal of Food Composition and Analysis, 2021

Abstract Soybean seeds are primary sources of natural tocopherols used by food and pharmaceutical... more Abstract Soybean seeds are primary sources of natural tocopherols used by food and pharmaceutical industries owing to their beneficial impacts on human health. Here, we profiled the seed tocopherol compositions of 1151 Chinese soybean accessions that originated from different ecoregions, grown in three locations for two years in China. Thus, this study aimed to evaluate the effect of accessions, ecoregions of origin, accession types and geographical factors on tocopherol content of soybean as well as unveil the correlations among tocopherols and other important seed quality traits. The highest average contents of α- and γ-tocopherols (15.43 μg g-1 and 151.44 μg g-1, respectively) were observed in the Northern Region (NR) accessions of China. Also, α-, γ-, and total tocopherol contents were higher in cultivars than landraces. The correlation analysis showed that tocopherols were significantly associated with other seed quality traits. α- and γ-tocopherols had significant positive correlations with latitude and longitude, while δ-tocopherol showed a contrary trend. Taken together, we identified novel soybean accessions that can be utilized as raw materials for food industries and in breeding programs to improve the tocopherols contents of soybean seeds.

Research paper thumbnail of Profiling and associations of seed nutritional characteristics in Chinese and USA soybean cultivars

Journal of Food Composition and Analysis, 2021

Abstract Soybean is an important oilseed crop both in China and the USA owing to its nutritional ... more Abstract Soybean is an important oilseed crop both in China and the USA owing to its nutritional and functional characteristics. The formation of nutritional components in soybean is influenced by the genetic background of cultivar as well as environmental factors. Here, we profiled protein, oil, fatty acids, soluble sugars and isoflavone in 218 Chinese and 115 USA soybean cultivars which were grown across three locations for two years in China. Significant differences (p

Research paper thumbnail of Mining candidate genes underlying seed oil content using BSA-seq in soybean

Industrial Crops and Products, Apr 1, 2023

Research paper thumbnail of Effect of seasonal and environmental variation on yield and yield components of hybrid Maize

International Journal of Agricultural Research, Innovation and Technology, Mar 20, 2015

The experiment was conducted during kharif II in 2006 & 07, rabi in 2006-07 & 07-08 and kharif I ... more The experiment was conducted during kharif II in 2006 & 07, rabi in 2006-07 & 07-08 and kharif I in 2007 and 2008 at ARS, Burirhat, Rangpur in RCB design to understand the influence of season and location specific environment effect on growth and yield of hybrid maize and selected suitable variety(s). Four hybrid maize varieties V1=BARI hybrid Maize (BHM)-2, V2=BHM-3, V3= BHM-5 and V4= Pacific-984 (as check) were tested during kharif

Research paper thumbnail of Improvement of potato based cropping patterns by inclusion of short duration Mungbean and T. Aman rice in Monga prone areas of Rangpur

International Journal of Agricultural Research, Innovation and Technology, Mar 20, 2015

The experiment was carried out to compare the improved cropping patterns against the farmers exis... more The experiment was carried out to compare the improved cropping patterns against the farmers existing potato based cropping patterns having no mungbean/brown manure crop for higher yield, economic return and income generation in agricultural field in the off period following RCBD design with three replications at farmer's field at Paikan Gangachara, Rangpur district during September-October. The treatments (cropping patterns) were T1 = T. aman rice (BINA 7)-Potato-Mungbean (BARI mungbean 6) (Improved pattern), T2 = T. aman rice (BR11)-Potato-Fallow (Farmers pattern), T3 = T. aman rice (BINA 7)-Potato + Maize intercrop-Mungbean (Improved pattern) and T4 = T. aman rice (BR11)-Potato / Maize relay (Farmers pattern). The highest yield (4.16 t ha-1) was recorded in T2 (BR11) which is statistically at par with T4 (4.15 t ha-1) but higher than the other treatments. Early planting sole potato (T1) gave highest yield (26.10 t ha-1) which was significantly higher than all other treatments. Late planting sole potato (T2), intercropped early potato (T3) and relay potato (T4) showed similar yield (23.61-24.79 t ha-1). Intercropped (T3) and Relay (T4) maize did not vary significantly in the studied parameters and yields were 8.21 and 7.92 t ha-1 , respectively. Mungbean after sole potato (T1) gave higher number of pods/plant (17.25), and yield (1.47 t ha-1) which is significantly higher than those of T3 (14.89 and 1.28 t ha-1 , respectively). Highest gross return (GR) (Tk. 417720) and gross margin (GM) (Tk. 220220) were calculated in improved pattern T3 and the lowest of those (Tk. 289670, Tk. 146020) in farmers pattern T2. The other improved pattern T3 was the second highest performer considering GR and GM. But BCR (2.21) was highest in T1 and second highest in T3. The results indicated that the improved patterns (T1, T3) were better than farmers pattern (T2, T4). The improved pattern (T1) gave GR Tk. 67890 and GM Tk. 51785 higher than farmers pattern (T2). Similarly, the other improved pattern (T3) showed Tk. 51870 and Tk. 37395 higher than farmers pattern (T4). The improved pattern T1 and T3 created 45 working day job for the labour for harvesting early matured rice in the Monga/ jobless period (October) while farmers' pattern gives only 3 days work. The mungbean included improved cropping patterns can be suggested for increased production, economic return and Monga mitigation (work opportunity in off period) in Rangpur.

Research paper thumbnail of Variability and heritability analysis in F4 genotypes of Brassica rapa L

Bangladesh Journal of Agricultural Research, Sep 12, 2014

Bangladesh to study variability in 10 F 4 lines obtained through intervarietal crosses along with... more Bangladesh to study variability in 10 F 4 lines obtained through intervarietal crosses along with 8 released varieties of Brassica rapa. Significant variation was observed among all the genotypes for all the characters studied. Considering genetic parameters high genotypic coefficient of variation (GCV) was observed for number of secondary branches per plant, siliquae per plant, yield per plant, whereas days to maturity showed very low GCV. High heritability with low genetic advance in percent of mean was observed for days to maturity which indicated that non-additive gene effects were involved for the expression of this character and selection for such trait might not be rewarding. High heritability with moderate genetic advance in percent of mean was observed for plant height and days to 50% flowering indicating that this trait was under additive gene control and selection for genetic improvement for this trait would be effective. Considering, inter genotypic variability, heritability, and genetic advance, % coefficient of variation and other agronomic performance G 2 , G 14 , G 18 , G 1 , G 9 , G 12 , G 16 , G 17 may be considered to be better parents for future uses in hybridization programme.

Research paper thumbnail of Mining candidate genes underlying seed oil content using BSA-seq in soybean

Industrial Crops and Products

Research paper thumbnail of Origin, Maturity Group and Seed Coat Color Influence Carotenoid and Chlorophyll Concentrations in Soybean Seeds

Plants

Soybean (Glycine max (L.) Merrill) seeds are abundant in physiologically active metabolites, incl... more Soybean (Glycine max (L.) Merrill) seeds are abundant in physiologically active metabolites, including carotenoids and chlorophylls, and are used as an affordable source of functional foods that promote and maintain human health. The distribution and variation of soybean seed metabolites are influenced by plant genetic characteristics and environmental factors. Here, we investigated the effects of germplasm origin, genotype, seed coat color and maturity group (MG) on the concentration variation of carotenoid and chlorophyll components in 408 soybean germplasm accessions collected from China, Japan, the USA and Russia. The results showed that genotype, germplasm origin, seed color, and MG were significant variation sources of carotenoid and chlorophyll contents in soybean seeds. The total carotenoids showed about a 25-fold variation among the soybean germplasms, with an overall mean of 12.04 µg g−1. Russian soybeans yielded 1.3-fold higher total carotenoids compared with Chinese and ...

Research paper thumbnail of Natural Variation of Seed Tocopherol Composition in Diverse World Soybean Accessions from Maturity Group 0 to VI Grown in China

Plants

Tocopherols are natural antioxidants that increase the stability of fat-containing foods and are ... more Tocopherols are natural antioxidants that increase the stability of fat-containing foods and are well known for their health benefits. To investigate the variation in seed tocopherol composition of soybeans from different origins, 493 soybean accessions from different countries (China, USA, Japan, and Russia) belonging to 7 maturity groups (MG 0–VI) were grown in 2 locations (Beijing and Hainan Provinces of China) for 2 years (2017 and 2018). The results showed that significant differences (p < 0.001) were observed among the accessions and origins for individual and total tocopherol contents. The total tocopherol content ranged from 118.92 μg g−1 to 344.02 μg g−1. Accessions from the USA had the highest average concentration of γ- and total tocopherols (152.92 and 238.21 μg g−1, respectively), whereas a higher level of α-tocopherol (12.82 μg g−1) was observed in the Russian accessions. The maturity group of the accession significantly (p < 0.001) influenced all tocopherol comp...

Research paper thumbnail of Identification of Genomic Loci and Candidate Genes Related to Seed Tocopherol Content in Soybean

Plants

Soybean seeds are primary sources of natural tocopherols used by the food and pharmaceutical indu... more Soybean seeds are primary sources of natural tocopherols used by the food and pharmaceutical industries, owing to their beneficial impacts on human health. Selection for higher tocopherol contents in seeds along with other desirable traits is an important goal in soybean breeding. In order to identify the genomic loci and candidate genes controlling tocopherol content in soybean seeds, the bulked-segregant analysis technique was performed using a natural population of soybean consisting of 1525 accessions. We constructed the bulked-segregant analysis based on 98 soybean accessions that showed extreme phenotypic variation for the target trait, consisting of 49 accessions with extremely-high and 49 accessions with extremely-low tocopherol content. A total of 144 variant sites and 109 predicted genes related to tocopherol content were identified, in which a total of 83 genes were annotated by the gene ontology functions. Furthermore, 13 enriched terms (p < 0.05) were detected, with ...

Research paper thumbnail of Profiling seed soluble sugar compositions in 1164 Chinese soybean accessions from major growing ecoregions

Research paper thumbnail of Profiling of naturally occurring folates in a diverse soybean germplasm by HPLC-MS/MS

Food Chemistry, 2022

Soybean is a rich source of folates. We optimised the extraction and detection of folates from so... more Soybean is a rich source of folates. We optimised the extraction and detection of folates from soybean seeds by HPLC-MS/MS and analysed the folate content and composition of 1074 accessions. Total folate content ranged from 64.51 to 691.24 μg/100 g fresh weight, with 10-fold variation, and 60 elite accessions with over 400 μg/100 g of total folate were identified. The most abundant component was 5-CHO-H4folate, which accounted for an average of 60% of total folate content. Seed-coat colour, seed weight, ecoregion, and accession type significantly affected soybean folate content. Furthermore, 5-CH3-H4folate correlated positively with seed protein (r = 0.24***) and negatively with oil (r = -0.26***). The geographical distribution of folate according to accession origin revealed that accessions from Northeast China contain higher amounts of total folate and 5-CHO-H4folate. This study provides comprehensive and novel insights into the folate profile of soybean, which will benefit soybean breeding for folate enhancement.

Research paper thumbnail of Simultaneous Determination of Carotenoids and Chlorophylls by the HPLC-UV-VIS Method in Soybean Seeds

Agronomy, 2021

Soybean contains nutritional bioactive compounds, including carotenoids associated with human hea... more Soybean contains nutritional bioactive compounds, including carotenoids associated with human health benefits. Carotenoids are applicable in pharmaceuticals/nutreceuticals, cosmetic, and mainly food industries. However, an efficient and accurate method for carotenoid and chlorophyll detection and quantification has not yet been developed and validated for soybean seeds. The need for a rapid and reliable analysis method has become increasingly important. Thus, this study was initiated to develop and validate a simple, rapid, and selective reversed-phase high-performance liquid chromatographic (RP-HPLC) method for the simultaneous determination of lutein, zeaxanthin, α-carotene, β–carotene, β–cryptoxanthin, and chlorophyll–a and –b in soybean flour sample (100.00 mg) extracted using ethanol-acetone (1:1) solvents at a volume of 1.50 mL. Interestingly, the effective separation technique was achieved using the mobile phases of methyl tert-butyl ether, methanol containing 10 mM ammonium ...

Research paper thumbnail of Seed tocopherol assessment and geographical distribution of 1151 Chinese soybean accessions from diverse ecoregions

Journal of Food Composition and Analysis, 2021

Abstract Soybean seeds are primary sources of natural tocopherols used by food and pharmaceutical... more Abstract Soybean seeds are primary sources of natural tocopherols used by food and pharmaceutical industries owing to their beneficial impacts on human health. Here, we profiled the seed tocopherol compositions of 1151 Chinese soybean accessions that originated from different ecoregions, grown in three locations for two years in China. Thus, this study aimed to evaluate the effect of accessions, ecoregions of origin, accession types and geographical factors on tocopherol content of soybean as well as unveil the correlations among tocopherols and other important seed quality traits. The highest average contents of α- and γ-tocopherols (15.43 μg g-1 and 151.44 μg g-1, respectively) were observed in the Northern Region (NR) accessions of China. Also, α-, γ-, and total tocopherol contents were higher in cultivars than landraces. The correlation analysis showed that tocopherols were significantly associated with other seed quality traits. α- and γ-tocopherols had significant positive correlations with latitude and longitude, while δ-tocopherol showed a contrary trend. Taken together, we identified novel soybean accessions that can be utilized as raw materials for food industries and in breeding programs to improve the tocopherols contents of soybean seeds.

Research paper thumbnail of Profiling and associations of seed nutritional characteristics in Chinese and USA soybean cultivars

Journal of Food Composition and Analysis, 2021

Abstract Soybean is an important oilseed crop both in China and the USA owing to its nutritional ... more Abstract Soybean is an important oilseed crop both in China and the USA owing to its nutritional and functional characteristics. The formation of nutritional components in soybean is influenced by the genetic background of cultivar as well as environmental factors. Here, we profiled protein, oil, fatty acids, soluble sugars and isoflavone in 218 Chinese and 115 USA soybean cultivars which were grown across three locations for two years in China. Significant differences (p