juan carlos alvarez rodriguez - Academia.edu (original) (raw)
Related Authors
CSIC (Consejo Superior de Investigaciones Científicas-Spanish National Research Council)
Uploads
Papers by juan carlos alvarez rodriguez
The Faseb Journal, Apr 1, 2013
Vision and Change [AAAS, 2011] outlines a blueprint for modernizing biology education by addressi... more Vision and Change [AAAS, 2011] outlines a blueprint for modernizing biology education by addressing conceptual understanding of key concepts, such as the relationship between structure and function. The document also highlights skills necessary for student success in 21st century Biology, such as the use of modeling and simulation. Here we describe a laboratory activity that allows students to investigate the dynamic nature of protein structure and function through the use of a modeling technique known as molecular dynamics (MD). The activity takes place over two lab periods that are 3 hr each. The first lab period unpacks the basic approach behind MD simulations, beginning with the kinematic equations that all bioscience students learn in an introductory physics course. During this period students are taught rudimentary programming skills in Python while guided through simple modeling exercises that lead up to the simulation of the motion of a single atom. In the second lab period students extend concepts learned in the first period to develop skills in the use of expert MD software. Here students simulate and analyze changes in protein conformation resulting from temperature change, solvation, and phosphorylation. The article will describe how these activities can be carried out using free software packages, including Abalone and VMD/NAMD. © 2016 by The International Union of Biochemistry and Molecular Biology, 2016.
Revista Brasileira De Parasitologia Veterinaria, Sep 1, 2011
Toxoplasmosis is a worldwide zoonosis caused by the protozoa Toxoplasma gondii which infects all ... more Toxoplasmosis is a worldwide zoonosis caused by the protozoa Toxoplasma gondii which infects all warm-blood vertebrates. This study aimed to assess the seroprevalence of anti-Toxoplasma gondii antibodies in a population of domestic cats seen at a major cat-only veterinary clinic in Curitiba, Paraná State, Southern Brazil. Serum samples were processed by indirect immunofluorescence assay (IIFA) for the detection of IgG. Antibody titers were found in 16.3% (46/282) of sera analyzed, with titers to T. gondii of 16 in eight cats, 64 in 23 cats, 256 in 14 cats and 1024 in one cat. Statistical differences were not found regarding the association with age, gender and different areas of the city (p > 0.05). No significant differences were found in any variable when comparing seropositivity with potential risk factors. The seroprevalence was relatively lower when compared to other Brazilian regions, probably due to the fact that the cats studied were owned, domiciled with restricted dietary habits based on processed foods, restricted access to the street and no prey access. In conclusion, low feline toxoplasmosis seroprevalence may be associated to owned cats due to adequate dietary care and restricted outdoor access, as well as low local environmental exposure.
The Faseb Journal, Apr 1, 2013
Vision and Change [AAAS, 2011] outlines a blueprint for modernizing biology education by addressi... more Vision and Change [AAAS, 2011] outlines a blueprint for modernizing biology education by addressing conceptual understanding of key concepts, such as the relationship between structure and function. The document also highlights skills necessary for student success in 21st century Biology, such as the use of modeling and simulation. Here we describe a laboratory activity that allows students to investigate the dynamic nature of protein structure and function through the use of a modeling technique known as molecular dynamics (MD). The activity takes place over two lab periods that are 3 hr each. The first lab period unpacks the basic approach behind MD simulations, beginning with the kinematic equations that all bioscience students learn in an introductory physics course. During this period students are taught rudimentary programming skills in Python while guided through simple modeling exercises that lead up to the simulation of the motion of a single atom. In the second lab period students extend concepts learned in the first period to develop skills in the use of expert MD software. Here students simulate and analyze changes in protein conformation resulting from temperature change, solvation, and phosphorylation. The article will describe how these activities can be carried out using free software packages, including Abalone and VMD/NAMD. © 2016 by The International Union of Biochemistry and Molecular Biology, 2016.
Revista Brasileira De Parasitologia Veterinaria, Sep 1, 2011
Toxoplasmosis is a worldwide zoonosis caused by the protozoa Toxoplasma gondii which infects all ... more Toxoplasmosis is a worldwide zoonosis caused by the protozoa Toxoplasma gondii which infects all warm-blood vertebrates. This study aimed to assess the seroprevalence of anti-Toxoplasma gondii antibodies in a population of domestic cats seen at a major cat-only veterinary clinic in Curitiba, Paraná State, Southern Brazil. Serum samples were processed by indirect immunofluorescence assay (IIFA) for the detection of IgG. Antibody titers were found in 16.3% (46/282) of sera analyzed, with titers to T. gondii of 16 in eight cats, 64 in 23 cats, 256 in 14 cats and 1024 in one cat. Statistical differences were not found regarding the association with age, gender and different areas of the city (p > 0.05). No significant differences were found in any variable when comparing seropositivity with potential risk factors. The seroprevalence was relatively lower when compared to other Brazilian regions, probably due to the fact that the cats studied were owned, domiciled with restricted dietary habits based on processed foods, restricted access to the street and no prey access. In conclusion, low feline toxoplasmosis seroprevalence may be associated to owned cats due to adequate dietary care and restricted outdoor access, as well as low local environmental exposure.