oscar cortes - Academia.edu (original) (raw)

Papers by oscar cortes

Research paper thumbnail of Author Correction: The genetic ancestry of American Creole cattle inferred from uniparental and autosomal genetic markers

Scientific Reports, 2020

An amendment to this paper has been published and can be accessed via a link at the top of the pa... more An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Research paper thumbnail of The legacy of Columbus in American horse populations assessed by microsatellite markers

Journal of Animal Breeding and Genetics, 2017

SummaryCriollo horse populations descend from horses brought from the Iberian Peninsula over the ... more SummaryCriollo horse populations descend from horses brought from the Iberian Peninsula over the period of colonization (15th to 17th century). They are spread throughout the Americas and have potentially undergone genetic hybridization with other breeds in the recent past. In this study, 25 autosomal microsatellites were genotyped in 50 horse breeds representing Criollo populations from 12 American countries (27 breeds), breeds from the Iberian Peninsula (19), one breed each from France and Morocco and two cosmopolitan horse breeds (Thoroughbred and Arabian). The genetic relationships among breeds identified five clusters: Celtic; Iberian; North American with Thoroughbred influence; most Colombian breeds; and nearly all other Criollo breeds. The group of “all other Criollo breeds” had the closest genetic relationship with breeds originating from the Iberian Peninsula, specifically with the Celtic group. For the whole set of Criollo breeds analysed, the estimated genetic contributio...

Research paper thumbnail of Conservation priorities of Iberoamerican pig breeds and their ancestors based on microsatellite information

Heredity, 2016

for the BioPig Consortium 10 Criollo pig breeds are descendants from pigs brought to the American... more for the BioPig Consortium 10 Criollo pig breeds are descendants from pigs brought to the American continent starting with Columbus second trip in 1493. Pigs currently play a key role in social economy and community cultural identity in Latin America. The aim of this study was to establish conservation priorities among a comprehensive group of Criollo pig breeds based on a set of 24 microsatellite markers and using different criteria. Spain and Portugal pig breeds, wild boar populations of different European geographic origins and commercial pig breeds were included in the analysis as potential genetic influences in the development of Criollo pig breeds. Different methods, differing in the weight given to within-and between-breed genetic variability, were used in order to estimate the contribution of each breed to global genetic diversity. As expected, the partial contribution to total heterozygosity gave high priority to Criollo pig breeds, whereas Weitzman procedures prioritized Iberian Peninsula breeds. With the combined within-and between-breed approaches, different conservation priorities were achieved. The Core Set methodologies highly prioritized Criollo pig breeds (Cr. Boliviano, Cr. Pacifico, Cr. Cubano and Cr. Guadalupe). However, weighing the between-and within-breed components with F ST and 1-F ST , respectively, resulted in higher contributions of Iberian breeds. In spite of the different conservation priorities according to the methodology used, other factors in addition to genetic information also need to be considered in conservation programmes, such as the economic, cultural or historical value of the breeds involved.

Research paper thumbnail of Relaciones genéticas entre ganaderías de lidia en función de su origen

Se relaciona la información histórica que existe del origen de las actuales ganaderías de la Unió... more Se relaciona la información histórica que existe del origen de las actuales ganaderías de la Unión de Criadores de Toros de Lidia y la información genética que se obtiene utilizando marcadores del tipo microsatélite ubicados en autosomas. Se estima el número de grupos genéticos que tiene mayor soporte estadístico con la información disponible, 1640 animales pertenecientes a 77 ganaderías y 24 microsatélites con 234 variantes alélicas. Utilizando los porcentajes de genoma que comparten los diferentes grupos genéticos calculados mediante un modelo que considera el número de grupos genéticos más verosímil, se calcula la distancia genética entre las parejas de ganaderías y se representan mediante un algoritmo neighbor-joining. Se discute la posición que ocupan en el árbol los principales grupos de ganaderías.

Research paper thumbnail of Association of bovine meat quality traits with genes included in the PPARG and PPARGC1A networks

Meat science, 2013

Understanding which are the genetic variants underlying the nutritional and sensory properties of... more Understanding which are the genetic variants underlying the nutritional and sensory properties of beef, enables improvement in meat quality. The aim of this study is to identify new molecular markers for meat quality through an association study using candidate genes included in the PPARG and PPARGC1A networks given their master role in coordinating metabolic adaptation in fat tissue, muscle and liver. Amongst the novel associations found in this study, selection of the positive marker variants of genes such as BCL3, LPL, PPARG, SCAP, and SCD will improve meat organoleptic characteristics and health by balancing the n-6 to n-3 fatty acid ratio in meat. Also previous results on GDF8 and DGAT1 were validated, and the novel ATF4, HNF4A and PPARGC1A associations, although slightly under the significance threshold, are consistent with their physiological roles. These data contribute insights into the complex gene-networks underlying economically important traits.

Research paper thumbnail of Pedigree analysis of a highly fragmented population, the Lidia cattle breed

Livestock Science, 2014

The aim of the study was to analyze the pedigree information of the Lidia bovine breed based on a... more The aim of the study was to analyze the pedigree information of the Lidia bovine breed based on animals registered in the Herdbook and belonging to those lineages recognized as conforming to the official breed standard. Pedigree records of 272,574 animals belonging to 83 herds classified in 30 lineages were used. The average number of equivalent generations known was 4.5 (varying among lineages from 4 in Braganza to 5.2 in Baltasar Iban). The generation interval (7.5 years) was longer than that estimated in other cattle breeds. The effective size was less than 50 and consequently the estimated increase in inbreeding per generation was greater than 1% in all the lineages analyzed. The increase in inbreeding level expected for the next 50 years varied from 7.4% in Braganza to 31.3% in Diego Garrido. The ratios among the effective number of founders, the effective number of ancestors and the effective number of founder genomes was considered evidence that genetic drift explained most of the loss of genetic variability in the Lidia bovine breed due to the reduced effective population sizes of the lineages, more than bottlenecks did, as they have been less dramatic. The lineage allele loss due to the genetic drift and the effect of inbreeding are the major concerns in managing the genetic diversity of the Lidia bovine breed. The analysis of pedigree information still remains as the main useful resource to establish genetic diversity conservation guidelines in the Lidia bovine breed. Minimizing inbreeding increase within lineages in the subdivided Lidia breed must be the major concern in managing the genetic diversity of this breed.

Research paper thumbnail of Matrilíneas en la formación del ganado bovino de lidia

Research paper thumbnail of Muscle lipid composition in bulls from 15 European breeds

Livestock Science, 2014

Cattle meat provides essential nutrients necessary for a balanced diet and health preservation. B... more Cattle meat provides essential nutrients necessary for a balanced diet and health preservation. Besides nutritional quality, consumers' preferences are related to specific attributes such as tenderness, taste and flavour. The present study characterizes the fatty acid composition of beef, which is an important factor in both nutritional and quality values, in 15 European cattle breeds fed a similar diet and reared in five countries (United Kingdom, Denmark, France, Italy and Spain). The effect of possible slight differences on diet composition which might have occurred between countries were included in the breed effect which confounds country, diet, slaughter house and slaughter day as all individuals of a same breed were managed simultaneously. The wide range of breeds studied and the significant differences on lipid profile described here provide a broad characterization of beef meat, which allows giving a better response to the variety of consumers' preferences. Regarding meat health benefits, the groups that stand out are: the double-muscled animals, which displayed lower total fat, lower proportion of saturated (SFA) and monounsaturated (MUFA) fatty acids, and a higher proportion of polyunsaturated (PUFA) fatty acids; and Limousin and Charolais breeds with a significantly higher conversion of 18:3n-3 PUFA to the long chain 22:6n-3 PUFA.

Research paper thumbnail of Genetic diversity, structure, and breed relationships in Iberian cattle1

Journal of Animal Science, 2011

In Iberia there are 51 officially recognized cattle breeds of which 15 are found in Portugal and ... more In Iberia there are 51 officially recognized cattle breeds of which 15 are found in Portugal and 38 in Spain. We present here a comprehensive analysis of the genetic diversity and structure of Iberian cattle. Forty of these breeds were genotyped with 19 highly polymorphic microsatellite markers. Asturiana de los Valles displayed the greatest allelic diversity and Mallorquina the least. Unbiased heterozygosity values ranged from 0.596 to 0.787. The network based on Reynolds distances was star-shaped with few pairs of interrelated breeds and a clear cluster of 4 breeds (Alistana/Arouquesa/Marinhoa/Mirandesa). The analysis of the genetic structure of Iberian cattle indicated that the most probable number of population clusters included in the study would be 36. Distance results were supported by the STRUCTURE software indicating a relatively recent origin or possible crossbreeding or both between pairs or small groups of breeds. Five clusters included 2 different breeds (Betizu/Pirenaica,

Research paper thumbnail of Simultaneous genotyping to detect myostatin gene polymorphism in beef cattle breeds

Journal of Animal Breeding and Genetics, 2002

SummaryThe myostatin gene codes for a growth factor involved in muscle development, and polymorph... more SummaryThe myostatin gene codes for a growth factor involved in muscle development, and polymorphism in this gene can have important economic consequences. Nine mutations affecting the amino‐acidic sequence have already been described, six of which are disruptive, inactivating the protein and causing bovine muscular hypertrophy. As the number of known mutations grows, it is necessary to develop a simple, routinely usable technique able to screen individuals in all populations. The oligonucleotide ligation assay (OLA) is proposed here for the rapid genotyping of the nine mutations known affecting the coding sequence in the main breeds of beef cattle. This technique showed its ability to reveal the genotype of individuals being a good tool to determine the frequency of each mutation in a population. The procedure is very flexible as new mutations can be added and removed at any time. Depending on the genotype of each individual, the technique allows breeders to make quick decisions on...

Research paper thumbnail of Y chromosome genetic diversity in the Lidia bovine breed: a highly fragmented population

Journal of Animal Breeding and Genetics, 2011

SummaryTo assess the paternal gene pool in the Lidia bovine breed (or fighting bull), a total of ... more SummaryTo assess the paternal gene pool in the Lidia bovine breed (or fighting bull), a total of 603 animals belonging to 81 herds classified in 33 lineages were genotyped for six Y chromosome microsatellites, one single nucleotide polymorphism and one indel. A total of 10 haplotypes were determined with a high level of frequency variation between them, ranging from 0.2 to 74%. All the haplotypes identified belong to two previously defined major haplogroups (Y1 and Y2). Two major paternal influences were identified, corresponding to the two most common haplotypes (H1Y1 and H3Y2) with frequencies of 74 and 18%, respectively. The detection of the INRA189‐104 allele evidenced an African influence in the Lidia bovine breed. Low levels of haplotype diversity have been achieved and only eight lineages showed more than one haplotype. Analysis of molecular variance showed a high level of interlineage variance (FST = 86%). Network results evidenced two main clusters made for those haplotypes...

Research paper thumbnail of Colombian Creole horse breeds: same origin but different diversity

Genetics and Molecular Biology, 2012

In order to understand the genetic ancestry and mitochondrial DNA (mtDNA) diversity of current Co... more In order to understand the genetic ancestry and mitochondrial DNA (mtDNA) diversity of current Colombian horse breeds we sequenced a 364-bp fragment of the mitocondrial DNA D-loop in 116 animals belonging to five Spanish horse breeds and the Colombian Paso Fino and Colombian Creole cattle horse breeds. Among Colombian horse breeds, haplogroup D had the highest frequency (53%), followed by haplogroups A (19%), C (8%) and F (6%). The higher frequency of haplogroup D in Colombian horse breeds supports the theory of an ancestral Iberian origin for these breeds. These results also indicate that different selective pressures among the Colombian breeds could explain the relatively higher genetic diversity found in the Colombian Creole cattle horse when compared with the Colombian Paso Fino.

Research paper thumbnail of Análisis de la variabilidad genética de origen paterno en la raza bovina de Lidia

Archivos de Zootecnia, 2011

Research paper thumbnail of Ancestral matrilineages and mitochondrial DNA diversity of the Lidia cattle breed

Animal Genetics, 2008

SummaryTo clarify the genetic ancestry and the mitochondrial DNA (mtDNA) diversity of the Lidia c... more SummaryTo clarify the genetic ancestry and the mitochondrial DNA (mtDNA) diversity of the Lidia cattle breed, a 521‐bp D‐loop fragment was sequenced in 527 animals belonging to 70 herds distributed across 29 lineages. The mtDNA diversity recorded was similar to that seen for Middle Eastern breeds and greater than that recorded for the majority of European breeds. Haplotype T3 was the most common (81%), followed by the African T1 haplotype (17%); very low frequencies were recorded for haplotypes T and T2. The results agree with there being two major ancestral lines for the Lidia breed, European and African, similar to that seen for other Mediterranean breeds. A wide range of variation in haplotype frequencies was seen between the examined lineages. Haplotype T3 was present in all those analysed; in five it was the only one present, and in only one lineage (Miura) was its frequency lower than that of T1. T1*, a haplotype reported in Criollo breeds and to date in only a single European...

Research paper thumbnail of Genomic Characterization of a Set of Iberian Peninsula Bovine Local Breeds at Risk of Extinction: Morenas Gallegas

Animals, 2020

A set of five local bovine breeds in danger of extinction named Cachena, Caldelá, Limiá, Frieires... more A set of five local bovine breeds in danger of extinction named Cachena, Caldelá, Limiá, Frieiresa, and Vianesa and included in the group of Morenas Gallegas are located in the Autonomous Community of Galicia at the Northwest of Spain. Local authorities launched a conservation plan at the end of the 21th century in order to preserve this important genetic reservoir. However, Morenas Gallegas bovine breeds never have been analyzed with genomic tools and this information may be crucial to develop conservation plans. The aim of the study was to analyze their genetic diversity and genetic relationships with a set of local and cosmopolitan European bovine breeds using single nucleotide polymorphisms. Our results show own genetic signatures for the Morenas Gallegas breeds which form a separate cluster when compared to the Spanish breeds analyzed, with the exception of the Cachena breed. The genetic diversity levels of the Morenas Gallegas were intermediate or high, and low inbreeding coef...

Research paper thumbnail of Diversity, identity and influence of other breeds in the development of Creole populations of domestic animals

Archivos Latinoamericanos de Producción Animal, 2017

Creole breeds of the various livestock species mainly derive from animals imported to America fro... more Creole breeds of the various livestock species mainly derive from animals imported to America from the Iberian Peninsula, starting in the early years of discovery and colonization. Creoles have undergone a long period of selective adaptation to a very diverse set of environmental conditions in the American continent, and over the last two centuries some Creole populations have been admixed with breeds originating from other European countries and India. In spite of the various threats undergone, some Creole populations are still maintained nowadays, especially in marginal regions, but they need to be better known, in order to recognize their identity and establish conservation programs. In this paper, we review the results published over the last five years by various Consortia established under the framework of the CONBIAND network, with the goal of studying the genetic diversity, structure and breed relationships in Creole breeds. In all species, Creole breeds reveal high levels o...

Research paper thumbnail of Genomic Tools for Effective Conservation of Livestock Breed Diversity

Diversity, 2019

Human concern about the status of genetic diversity in livestock breeds and their conservation ha... more Human concern about the status of genetic diversity in livestock breeds and their conservation has increased, as intense selection and reduced population sizes in many breeds has caused losses on the global livestock genetic biodiversity. Traditionally, pedigree data provided by the breeders were used to estimate genetic diversity parameters, but over the past decades, technology has made possible the development of genomic markers. The result has been new opportunities to estimate genetic diversity in more detail, and to improve selection as well as prioritizing animals for conservation of genetic resources. The aim of the review is to summarize the evolution of livestock genomic markers and to explore the potential of the newest high-throughput technologies for estimation and conservation of livestock genetic diversity. More accurate diversity parameters are observed when genomic information is used for selection decisions instead of the traditional estimates using pedigree data. ...

Research paper thumbnail of X-ray laser research at JAERI

LEOS 2001. 14th Annual Meeting of the IEEE Lasers and Electro-Optics Society (Cat. No.01CH37242)

A 1 mm thick silver slab target was irradiated by one beam line of our chirped pulse amplificatio... more A 1 mm thick silver slab target was irradiated by one beam line of our chirped pulse amplification (CPA) Nd:glass laser system. The x-ray laser output from the nickel-like silver plasma was observed by use of a grazing incidence spectrometer. In this spectrometer, we used a laminar type grating and the detector was a back-illuminated charged couple device

Research paper thumbnail of Prostatectomía Radical Laparoscopica Extraperitoneal. Experiencia Preliminar

Arch. Esp. …, 2005

Resumen.- OBJETIVOS: Presentar nuestra experiencia inicial en la práctica de la prostatectomía ra... more Resumen.- OBJETIVOS: Presentar nuestra experiencia inicial en la práctica de la prostatectomía radical laparoscópica por via extraperitoneal. Se describe la técnica quirúrgica y se revisan las dificultades técnicas, los costes de tiempo y las complicaciones. MÉTODOS: Entre Enero ...

Research paper thumbnail of Author Correction: The genetic ancestry of American Creole cattle inferred from uniparental and autosomal genetic markers

Scientific Reports, 2020

An amendment to this paper has been published and can be accessed via a link at the top of the pa... more An amendment to this paper has been published and can be accessed via a link at the top of the paper.

Research paper thumbnail of The legacy of Columbus in American horse populations assessed by microsatellite markers

Journal of Animal Breeding and Genetics, 2017

SummaryCriollo horse populations descend from horses brought from the Iberian Peninsula over the ... more SummaryCriollo horse populations descend from horses brought from the Iberian Peninsula over the period of colonization (15th to 17th century). They are spread throughout the Americas and have potentially undergone genetic hybridization with other breeds in the recent past. In this study, 25 autosomal microsatellites were genotyped in 50 horse breeds representing Criollo populations from 12 American countries (27 breeds), breeds from the Iberian Peninsula (19), one breed each from France and Morocco and two cosmopolitan horse breeds (Thoroughbred and Arabian). The genetic relationships among breeds identified five clusters: Celtic; Iberian; North American with Thoroughbred influence; most Colombian breeds; and nearly all other Criollo breeds. The group of “all other Criollo breeds” had the closest genetic relationship with breeds originating from the Iberian Peninsula, specifically with the Celtic group. For the whole set of Criollo breeds analysed, the estimated genetic contributio...

Research paper thumbnail of Conservation priorities of Iberoamerican pig breeds and their ancestors based on microsatellite information

Heredity, 2016

for the BioPig Consortium 10 Criollo pig breeds are descendants from pigs brought to the American... more for the BioPig Consortium 10 Criollo pig breeds are descendants from pigs brought to the American continent starting with Columbus second trip in 1493. Pigs currently play a key role in social economy and community cultural identity in Latin America. The aim of this study was to establish conservation priorities among a comprehensive group of Criollo pig breeds based on a set of 24 microsatellite markers and using different criteria. Spain and Portugal pig breeds, wild boar populations of different European geographic origins and commercial pig breeds were included in the analysis as potential genetic influences in the development of Criollo pig breeds. Different methods, differing in the weight given to within-and between-breed genetic variability, were used in order to estimate the contribution of each breed to global genetic diversity. As expected, the partial contribution to total heterozygosity gave high priority to Criollo pig breeds, whereas Weitzman procedures prioritized Iberian Peninsula breeds. With the combined within-and between-breed approaches, different conservation priorities were achieved. The Core Set methodologies highly prioritized Criollo pig breeds (Cr. Boliviano, Cr. Pacifico, Cr. Cubano and Cr. Guadalupe). However, weighing the between-and within-breed components with F ST and 1-F ST , respectively, resulted in higher contributions of Iberian breeds. In spite of the different conservation priorities according to the methodology used, other factors in addition to genetic information also need to be considered in conservation programmes, such as the economic, cultural or historical value of the breeds involved.

Research paper thumbnail of Relaciones genéticas entre ganaderías de lidia en función de su origen

Se relaciona la información histórica que existe del origen de las actuales ganaderías de la Unió... more Se relaciona la información histórica que existe del origen de las actuales ganaderías de la Unión de Criadores de Toros de Lidia y la información genética que se obtiene utilizando marcadores del tipo microsatélite ubicados en autosomas. Se estima el número de grupos genéticos que tiene mayor soporte estadístico con la información disponible, 1640 animales pertenecientes a 77 ganaderías y 24 microsatélites con 234 variantes alélicas. Utilizando los porcentajes de genoma que comparten los diferentes grupos genéticos calculados mediante un modelo que considera el número de grupos genéticos más verosímil, se calcula la distancia genética entre las parejas de ganaderías y se representan mediante un algoritmo neighbor-joining. Se discute la posición que ocupan en el árbol los principales grupos de ganaderías.

Research paper thumbnail of Association of bovine meat quality traits with genes included in the PPARG and PPARGC1A networks

Meat science, 2013

Understanding which are the genetic variants underlying the nutritional and sensory properties of... more Understanding which are the genetic variants underlying the nutritional and sensory properties of beef, enables improvement in meat quality. The aim of this study is to identify new molecular markers for meat quality through an association study using candidate genes included in the PPARG and PPARGC1A networks given their master role in coordinating metabolic adaptation in fat tissue, muscle and liver. Amongst the novel associations found in this study, selection of the positive marker variants of genes such as BCL3, LPL, PPARG, SCAP, and SCD will improve meat organoleptic characteristics and health by balancing the n-6 to n-3 fatty acid ratio in meat. Also previous results on GDF8 and DGAT1 were validated, and the novel ATF4, HNF4A and PPARGC1A associations, although slightly under the significance threshold, are consistent with their physiological roles. These data contribute insights into the complex gene-networks underlying economically important traits.

Research paper thumbnail of Pedigree analysis of a highly fragmented population, the Lidia cattle breed

Livestock Science, 2014

The aim of the study was to analyze the pedigree information of the Lidia bovine breed based on a... more The aim of the study was to analyze the pedigree information of the Lidia bovine breed based on animals registered in the Herdbook and belonging to those lineages recognized as conforming to the official breed standard. Pedigree records of 272,574 animals belonging to 83 herds classified in 30 lineages were used. The average number of equivalent generations known was 4.5 (varying among lineages from 4 in Braganza to 5.2 in Baltasar Iban). The generation interval (7.5 years) was longer than that estimated in other cattle breeds. The effective size was less than 50 and consequently the estimated increase in inbreeding per generation was greater than 1% in all the lineages analyzed. The increase in inbreeding level expected for the next 50 years varied from 7.4% in Braganza to 31.3% in Diego Garrido. The ratios among the effective number of founders, the effective number of ancestors and the effective number of founder genomes was considered evidence that genetic drift explained most of the loss of genetic variability in the Lidia bovine breed due to the reduced effective population sizes of the lineages, more than bottlenecks did, as they have been less dramatic. The lineage allele loss due to the genetic drift and the effect of inbreeding are the major concerns in managing the genetic diversity of the Lidia bovine breed. The analysis of pedigree information still remains as the main useful resource to establish genetic diversity conservation guidelines in the Lidia bovine breed. Minimizing inbreeding increase within lineages in the subdivided Lidia breed must be the major concern in managing the genetic diversity of this breed.

Research paper thumbnail of Matrilíneas en la formación del ganado bovino de lidia

Research paper thumbnail of Muscle lipid composition in bulls from 15 European breeds

Livestock Science, 2014

Cattle meat provides essential nutrients necessary for a balanced diet and health preservation. B... more Cattle meat provides essential nutrients necessary for a balanced diet and health preservation. Besides nutritional quality, consumers' preferences are related to specific attributes such as tenderness, taste and flavour. The present study characterizes the fatty acid composition of beef, which is an important factor in both nutritional and quality values, in 15 European cattle breeds fed a similar diet and reared in five countries (United Kingdom, Denmark, France, Italy and Spain). The effect of possible slight differences on diet composition which might have occurred between countries were included in the breed effect which confounds country, diet, slaughter house and slaughter day as all individuals of a same breed were managed simultaneously. The wide range of breeds studied and the significant differences on lipid profile described here provide a broad characterization of beef meat, which allows giving a better response to the variety of consumers' preferences. Regarding meat health benefits, the groups that stand out are: the double-muscled animals, which displayed lower total fat, lower proportion of saturated (SFA) and monounsaturated (MUFA) fatty acids, and a higher proportion of polyunsaturated (PUFA) fatty acids; and Limousin and Charolais breeds with a significantly higher conversion of 18:3n-3 PUFA to the long chain 22:6n-3 PUFA.

Research paper thumbnail of Genetic diversity, structure, and breed relationships in Iberian cattle1

Journal of Animal Science, 2011

In Iberia there are 51 officially recognized cattle breeds of which 15 are found in Portugal and ... more In Iberia there are 51 officially recognized cattle breeds of which 15 are found in Portugal and 38 in Spain. We present here a comprehensive analysis of the genetic diversity and structure of Iberian cattle. Forty of these breeds were genotyped with 19 highly polymorphic microsatellite markers. Asturiana de los Valles displayed the greatest allelic diversity and Mallorquina the least. Unbiased heterozygosity values ranged from 0.596 to 0.787. The network based on Reynolds distances was star-shaped with few pairs of interrelated breeds and a clear cluster of 4 breeds (Alistana/Arouquesa/Marinhoa/Mirandesa). The analysis of the genetic structure of Iberian cattle indicated that the most probable number of population clusters included in the study would be 36. Distance results were supported by the STRUCTURE software indicating a relatively recent origin or possible crossbreeding or both between pairs or small groups of breeds. Five clusters included 2 different breeds (Betizu/Pirenaica,

Research paper thumbnail of Simultaneous genotyping to detect myostatin gene polymorphism in beef cattle breeds

Journal of Animal Breeding and Genetics, 2002

SummaryThe myostatin gene codes for a growth factor involved in muscle development, and polymorph... more SummaryThe myostatin gene codes for a growth factor involved in muscle development, and polymorphism in this gene can have important economic consequences. Nine mutations affecting the amino‐acidic sequence have already been described, six of which are disruptive, inactivating the protein and causing bovine muscular hypertrophy. As the number of known mutations grows, it is necessary to develop a simple, routinely usable technique able to screen individuals in all populations. The oligonucleotide ligation assay (OLA) is proposed here for the rapid genotyping of the nine mutations known affecting the coding sequence in the main breeds of beef cattle. This technique showed its ability to reveal the genotype of individuals being a good tool to determine the frequency of each mutation in a population. The procedure is very flexible as new mutations can be added and removed at any time. Depending on the genotype of each individual, the technique allows breeders to make quick decisions on...

Research paper thumbnail of Y chromosome genetic diversity in the Lidia bovine breed: a highly fragmented population

Journal of Animal Breeding and Genetics, 2011

SummaryTo assess the paternal gene pool in the Lidia bovine breed (or fighting bull), a total of ... more SummaryTo assess the paternal gene pool in the Lidia bovine breed (or fighting bull), a total of 603 animals belonging to 81 herds classified in 33 lineages were genotyped for six Y chromosome microsatellites, one single nucleotide polymorphism and one indel. A total of 10 haplotypes were determined with a high level of frequency variation between them, ranging from 0.2 to 74%. All the haplotypes identified belong to two previously defined major haplogroups (Y1 and Y2). Two major paternal influences were identified, corresponding to the two most common haplotypes (H1Y1 and H3Y2) with frequencies of 74 and 18%, respectively. The detection of the INRA189‐104 allele evidenced an African influence in the Lidia bovine breed. Low levels of haplotype diversity have been achieved and only eight lineages showed more than one haplotype. Analysis of molecular variance showed a high level of interlineage variance (FST = 86%). Network results evidenced two main clusters made for those haplotypes...

Research paper thumbnail of Colombian Creole horse breeds: same origin but different diversity

Genetics and Molecular Biology, 2012

In order to understand the genetic ancestry and mitochondrial DNA (mtDNA) diversity of current Co... more In order to understand the genetic ancestry and mitochondrial DNA (mtDNA) diversity of current Colombian horse breeds we sequenced a 364-bp fragment of the mitocondrial DNA D-loop in 116 animals belonging to five Spanish horse breeds and the Colombian Paso Fino and Colombian Creole cattle horse breeds. Among Colombian horse breeds, haplogroup D had the highest frequency (53%), followed by haplogroups A (19%), C (8%) and F (6%). The higher frequency of haplogroup D in Colombian horse breeds supports the theory of an ancestral Iberian origin for these breeds. These results also indicate that different selective pressures among the Colombian breeds could explain the relatively higher genetic diversity found in the Colombian Creole cattle horse when compared with the Colombian Paso Fino.

Research paper thumbnail of Análisis de la variabilidad genética de origen paterno en la raza bovina de Lidia

Archivos de Zootecnia, 2011

Research paper thumbnail of Ancestral matrilineages and mitochondrial DNA diversity of the Lidia cattle breed

Animal Genetics, 2008

SummaryTo clarify the genetic ancestry and the mitochondrial DNA (mtDNA) diversity of the Lidia c... more SummaryTo clarify the genetic ancestry and the mitochondrial DNA (mtDNA) diversity of the Lidia cattle breed, a 521‐bp D‐loop fragment was sequenced in 527 animals belonging to 70 herds distributed across 29 lineages. The mtDNA diversity recorded was similar to that seen for Middle Eastern breeds and greater than that recorded for the majority of European breeds. Haplotype T3 was the most common (81%), followed by the African T1 haplotype (17%); very low frequencies were recorded for haplotypes T and T2. The results agree with there being two major ancestral lines for the Lidia breed, European and African, similar to that seen for other Mediterranean breeds. A wide range of variation in haplotype frequencies was seen between the examined lineages. Haplotype T3 was present in all those analysed; in five it was the only one present, and in only one lineage (Miura) was its frequency lower than that of T1. T1*, a haplotype reported in Criollo breeds and to date in only a single European...

Research paper thumbnail of Genomic Characterization of a Set of Iberian Peninsula Bovine Local Breeds at Risk of Extinction: Morenas Gallegas

Animals, 2020

A set of five local bovine breeds in danger of extinction named Cachena, Caldelá, Limiá, Frieires... more A set of five local bovine breeds in danger of extinction named Cachena, Caldelá, Limiá, Frieiresa, and Vianesa and included in the group of Morenas Gallegas are located in the Autonomous Community of Galicia at the Northwest of Spain. Local authorities launched a conservation plan at the end of the 21th century in order to preserve this important genetic reservoir. However, Morenas Gallegas bovine breeds never have been analyzed with genomic tools and this information may be crucial to develop conservation plans. The aim of the study was to analyze their genetic diversity and genetic relationships with a set of local and cosmopolitan European bovine breeds using single nucleotide polymorphisms. Our results show own genetic signatures for the Morenas Gallegas breeds which form a separate cluster when compared to the Spanish breeds analyzed, with the exception of the Cachena breed. The genetic diversity levels of the Morenas Gallegas were intermediate or high, and low inbreeding coef...

Research paper thumbnail of Diversity, identity and influence of other breeds in the development of Creole populations of domestic animals

Archivos Latinoamericanos de Producción Animal, 2017

Creole breeds of the various livestock species mainly derive from animals imported to America fro... more Creole breeds of the various livestock species mainly derive from animals imported to America from the Iberian Peninsula, starting in the early years of discovery and colonization. Creoles have undergone a long period of selective adaptation to a very diverse set of environmental conditions in the American continent, and over the last two centuries some Creole populations have been admixed with breeds originating from other European countries and India. In spite of the various threats undergone, some Creole populations are still maintained nowadays, especially in marginal regions, but they need to be better known, in order to recognize their identity and establish conservation programs. In this paper, we review the results published over the last five years by various Consortia established under the framework of the CONBIAND network, with the goal of studying the genetic diversity, structure and breed relationships in Creole breeds. In all species, Creole breeds reveal high levels o...

Research paper thumbnail of Genomic Tools for Effective Conservation of Livestock Breed Diversity

Diversity, 2019

Human concern about the status of genetic diversity in livestock breeds and their conservation ha... more Human concern about the status of genetic diversity in livestock breeds and their conservation has increased, as intense selection and reduced population sizes in many breeds has caused losses on the global livestock genetic biodiversity. Traditionally, pedigree data provided by the breeders were used to estimate genetic diversity parameters, but over the past decades, technology has made possible the development of genomic markers. The result has been new opportunities to estimate genetic diversity in more detail, and to improve selection as well as prioritizing animals for conservation of genetic resources. The aim of the review is to summarize the evolution of livestock genomic markers and to explore the potential of the newest high-throughput technologies for estimation and conservation of livestock genetic diversity. More accurate diversity parameters are observed when genomic information is used for selection decisions instead of the traditional estimates using pedigree data. ...

Research paper thumbnail of X-ray laser research at JAERI

LEOS 2001. 14th Annual Meeting of the IEEE Lasers and Electro-Optics Society (Cat. No.01CH37242)

A 1 mm thick silver slab target was irradiated by one beam line of our chirped pulse amplificatio... more A 1 mm thick silver slab target was irradiated by one beam line of our chirped pulse amplification (CPA) Nd:glass laser system. The x-ray laser output from the nickel-like silver plasma was observed by use of a grazing incidence spectrometer. In this spectrometer, we used a laminar type grating and the detector was a back-illuminated charged couple device

Research paper thumbnail of Prostatectomía Radical Laparoscopica Extraperitoneal. Experiencia Preliminar

Arch. Esp. …, 2005

Resumen.- OBJETIVOS: Presentar nuestra experiencia inicial en la práctica de la prostatectomía ra... more Resumen.- OBJETIVOS: Presentar nuestra experiencia inicial en la práctica de la prostatectomía radical laparoscópica por via extraperitoneal. Se describe la técnica quirúrgica y se revisan las dificultades técnicas, los costes de tiempo y las complicaciones. MÉTODOS: Entre Enero ...