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Papers by Achim Schmalenberger

bioRxiv (Cold Spring Harbor Laboratory), Feb 8, 2021

Environmental Science & Technology, Jun 21, 2013

Phosphorus is a finite, essential macronutrient for agriculture. Various nutrient recycling techn... more Phosphorus is a finite, essential macronutrient for agriculture. Various nutrient recycling technologies in waste streams management are currently under development in many European countries in order to alleviate the dependency of the EU on imports of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products such as struvites and ashes need to be assessed for their application as so-called recycling-derived fertilisers (RDF) in the agricultural sector prior to commercialisation. Albeit high phosphorus abundance in most soils, the phosphorus availability for plant growth promotion in the soil solution is usually low due to strong P sorption in soil and depends vastly on the microbial mobilisation capability of the soil.To investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota, a short-term pot trial was conducted over the period of 54 days.Lolium perenne(v...

Access microbiology, May 27, 2022

Applied Soil Ecology, Feb 1, 2023

Advances in Applied Microbiology, 2016

Soil amendments with biochar to improve soil fertility and increase soil carbon stocks have recei... more Soil amendments with biochar to improve soil fertility and increase soil carbon stocks have received some high-level attention. Physical and chemical analyses of amended soils and biochars from various feedstocks are reported, alongside some evaluations of plant growth promotion capabilities. Fewer studies investigated the soil microbiota and their potential to increase cycling and mobilization of nutrients in biochar-amended soils. This review is discussing the latest findings in the bacterial contribution to cycling and mobilizing nitrogen, phosphorus, and sulfur in biochar-amended soils and potential contributions to plant growth promotion. Depending on feedstock, pyrolysis, soil type, and plant cover, changes in the bacterial community structure were observed for a majority of the studies using amplicon sequencing or genetic fingerprinting methods. Prokaryotic nitrification largely depends on the availability of ammonium and can vary considerably under soil biochar amendment. However, denitrification to di-nitrogen and in particular, nitrous oxide reductase activity is commonly enhanced, resulting in reduced nitrous oxide emissions. Likewise, bacterial fixation of di-nitrogen appears to be regularly enhanced. A paucity of studies suggests that bacterial mobilization of phosphorus and sulfur is enhanced as well. However, most studies only tested for extracellular sulfatase and phosphatase activity. Further research is needed to reveal details of the bacterial nutrient mobilizing capabilities and this is in particular the case for the mobilization of phosphorus and sulfur.

Plants

Various nutrient recycling technologies are currently under development in order to alleviate the... more Various nutrient recycling technologies are currently under development in order to alleviate the dependency of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products, such as struvites and ashes, need to be assessed for their application as so-called recycling-derived fertilizers (RDFs) in the agricultural sector prior to commercialization. Here, we conducted a short-term (54 days) trial to investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota. Lolium perenne was grown with application of superphosphate (SP) as inorganic fertilizer, two ashes (poultry litter ash (PLA) and sewage sludge ash (SSA)), and two struvites (municipal wastewater struvite (MWS) and commercial CrystalGreen® (CGS)) applied at 20 and 60 kg P ha−1 in four replicates. A P-free control (SP0) was also included in the trial. Struvite application increased plant dry weights, and availab...

Agronomy

Phosphorus (P) is a major nutrient for plant growth and animal health, and its availability in so... more Phosphorus (P) is a major nutrient for plant growth and animal health, and its availability in soil is influenced by agronomic management and soil properties. This study examined the distribution of labile and non-labile soil P fractions in grassland and the properties that influence their distribution in temperate grasslands. Eleven fractions were identified as, labile (H2O.P and NaHCO3.P), moderately labile (NaOH.P) and plant non-available (NaOH.P, HCl.P and residual P). The residual P, moderately labile organic (NaOH.Po) and inorganic (NaOH.Pi) fractions comprised 38%, 24% and 15% of the total P (TP), respectively. The residual and organic (Po) fractions were associated with extractable Fe, and the NaOH.Pi fraction was associated with extractable Al. Agronomic reagents (Morgan’s and Mehlich3) targeted specific fractions based on their affinity for different soil elements. Morgan’s P was associated with extractable and residual Ca and in high Ca soils, and overestimated plant-avai...

Postharvest Biology and Technology, 2016

Science of The Total Environment, 2016

Plants

This study aimed to elucidate the role of bacteria colonising mycorrhizal hyphae in organically b... more This study aimed to elucidate the role of bacteria colonising mycorrhizal hyphae in organically bound sulfur mobilisation, the dominant soil sulfur source that is not directly plant available. The effect of an intact mycorrhizal symbiosis with access to stable isotope organo-34S enriched soils encased in 35 µm mesh cores was tested in microcosms with Agrostis stolonifera and Plantago lanceolata. Hyphae and associated soil were sampled from static mesh cores with mycorrhizal ingrowth and rotating mesh cores that exclude mycorrhizal ingrowth as well as corresponding rhizosphere soil, while plant shoots were analysed for 34S uptake. Static cores increased uptake of 34S at early stages of plant growth when sulfur demand appeared to be high and harboured significantly larger populations of sulfonate mobilising bacteria. Bacterial and fungal communities were significantly different in the hyphospheres of static cores when compared to rotating cores, not associated with plant hosts. Shifts...

Foods

Leafy vegetables are associated with Listeriosis outbreaks due to contamination with Listeria mon... more Leafy vegetables are associated with Listeriosis outbreaks due to contamination with Listeria monocytogenes. To date, contradictory findings were reported on spinach, rocket, and kale, where some studies reported growth of L. monocytogenes, while others did not. Thus, the current study investigated the reason for conflicting findings by producing leafy vegetables, where cultivation factors were known for growth potential studies. Of all polytunnel produce, kale Nero di Toscana demonstrated the highest growth potential (2.56 log cfu g−1), followed by spinach F1 Cello (1.84 log cfu g−1), rocket Buzz (1.41 log cfu g−1), spinach F1 Trumpet (1.37 log cfu g−1), and finally rocket Esmee (1.23 log cfu g−1). Thus, plant species and variety influenced L. monocytogenes growth potentials. Moreover, significantly lower growth potentials of 0.3 log cfu g−1 were identified when rocket Buzz was cultivated in open fields (1.11 log cfu g−1) instead of a polytunnel. The opposite effect was observed fo...

The recently characterized multidrug-resistant clone of the animal and human zoonotic pathogen Rh... more The recently characterized multidrug-resistant clone of the animal and human zoonotic pathogen Rhodococcus equi, MDR-RE 2287, has been circulating among horse farms in the United States (US) since the early 2000’s. Here, we report the first documented detection of the MDR-RE 2287 clone outside the US. The finding highlights the risk of MDR-RE spreading internationally with the movement of horses.

382 Do organic acids contribute to bioweathering rates? ANDREW W. BRAY*, STEEVE BONNEVILLE, ACHIM... more 382 Do organic acids contribute to bioweathering rates? ANDREW W. BRAY*, STEEVE BONNEVILLE, ACHIM SCHMALENBERGER, ERIC H. OELKERS AND LIANE G. BENNING Earth Surface Science Institute, SEE, University of Leeds, UK (* correspondence: a.w.bray@leeds.ac.uk) Géochimie et Biogéochimie Experimentale, CNRS, Toulouse, France. Biogéochimie et Modélisation du système Terre, DSTE, Université Libre de Bruxelles, Brussels, Belgium (steeve.bonneville@ulb.ac.be) Dept. of Life Sciences, University of Limerick, Ireland (Achim.Schmalenberger@ul.ie). Dept. of Earth Sciences, University College London, UK (e.oelkers@ucl.ac.uk). German Research Centre for Geosciences, GFZ, 14473, Potsdam, Germany (benning@gfz-potsdam.de).

Soil drainage and phosphorus (P) availability are considered indicators of management intensity i... more Soil drainage and phosphorus (P) availability are considered indicators of management intensity in pasture-based agriculture supporting livestock. However, microbial adaptations to P-availability according to soil drainage class are rarely investigated. We hypothesized that well-drained grasslands with high P-availability will sustain a distinctive soil microbiota when compared to poorly-drained grasslands with low-P availability. The relationship between soil drainage, plant available P and grassland microbial communities was evaluated among well-drained sites with high- or low-P and poorly-drained sites with high- or low-P, using fingerprinting, next-generation sequencing and quantitative PCR. Bacterial community structures were primarily affected by drainage as well as significantly separated between a combination of drainage and P availability i.e. low-P and poorly drained versus high-P and well drained. Abundance of the bacterial phylum Actinobacteria was significantly higher i...

bioRxiv (Cold Spring Harbor Laboratory), Feb 8, 2021

Environmental Science & Technology, Jun 21, 2013

Phosphorus is a finite, essential macronutrient for agriculture. Various nutrient recycling techn... more Phosphorus is a finite, essential macronutrient for agriculture. Various nutrient recycling technologies in waste streams management are currently under development in many European countries in order to alleviate the dependency of the EU on imports of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products such as struvites and ashes need to be assessed for their application as so-called recycling-derived fertilisers (RDF) in the agricultural sector prior to commercialisation. Albeit high phosphorus abundance in most soils, the phosphorus availability for plant growth promotion in the soil solution is usually low due to strong P sorption in soil and depends vastly on the microbial mobilisation capability of the soil.To investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota, a short-term pot trial was conducted over the period of 54 days.Lolium perenne(v...

Access microbiology, May 27, 2022

Applied Soil Ecology, Feb 1, 2023

Advances in Applied Microbiology, 2016

Soil amendments with biochar to improve soil fertility and increase soil carbon stocks have recei... more Soil amendments with biochar to improve soil fertility and increase soil carbon stocks have received some high-level attention. Physical and chemical analyses of amended soils and biochars from various feedstocks are reported, alongside some evaluations of plant growth promotion capabilities. Fewer studies investigated the soil microbiota and their potential to increase cycling and mobilization of nutrients in biochar-amended soils. This review is discussing the latest findings in the bacterial contribution to cycling and mobilizing nitrogen, phosphorus, and sulfur in biochar-amended soils and potential contributions to plant growth promotion. Depending on feedstock, pyrolysis, soil type, and plant cover, changes in the bacterial community structure were observed for a majority of the studies using amplicon sequencing or genetic fingerprinting methods. Prokaryotic nitrification largely depends on the availability of ammonium and can vary considerably under soil biochar amendment. However, denitrification to di-nitrogen and in particular, nitrous oxide reductase activity is commonly enhanced, resulting in reduced nitrous oxide emissions. Likewise, bacterial fixation of di-nitrogen appears to be regularly enhanced. A paucity of studies suggests that bacterial mobilization of phosphorus and sulfur is enhanced as well. However, most studies only tested for extracellular sulfatase and phosphatase activity. Further research is needed to reveal details of the bacterial nutrient mobilizing capabilities and this is in particular the case for the mobilization of phosphorus and sulfur.

Plants

Various nutrient recycling technologies are currently under development in order to alleviate the... more Various nutrient recycling technologies are currently under development in order to alleviate the dependency of non-renewable raw material for the production of mineral phosphorus fertilizers commonly used in agriculture. The resulting products, such as struvites and ashes, need to be assessed for their application as so-called recycling-derived fertilizers (RDFs) in the agricultural sector prior to commercialization. Here, we conducted a short-term (54 days) trial to investigate the impact of different phosphorus fertilizers on plant growth and the soil P cycling microbiota. Lolium perenne was grown with application of superphosphate (SP) as inorganic fertilizer, two ashes (poultry litter ash (PLA) and sewage sludge ash (SSA)), and two struvites (municipal wastewater struvite (MWS) and commercial CrystalGreen® (CGS)) applied at 20 and 60 kg P ha−1 in four replicates. A P-free control (SP0) was also included in the trial. Struvite application increased plant dry weights, and availab...

Agronomy

Phosphorus (P) is a major nutrient for plant growth and animal health, and its availability in so... more Phosphorus (P) is a major nutrient for plant growth and animal health, and its availability in soil is influenced by agronomic management and soil properties. This study examined the distribution of labile and non-labile soil P fractions in grassland and the properties that influence their distribution in temperate grasslands. Eleven fractions were identified as, labile (H2O.P and NaHCO3.P), moderately labile (NaOH.P) and plant non-available (NaOH.P, HCl.P and residual P). The residual P, moderately labile organic (NaOH.Po) and inorganic (NaOH.Pi) fractions comprised 38%, 24% and 15% of the total P (TP), respectively. The residual and organic (Po) fractions were associated with extractable Fe, and the NaOH.Pi fraction was associated with extractable Al. Agronomic reagents (Morgan’s and Mehlich3) targeted specific fractions based on their affinity for different soil elements. Morgan’s P was associated with extractable and residual Ca and in high Ca soils, and overestimated plant-avai...

Postharvest Biology and Technology, 2016

Science of The Total Environment, 2016

Plants

This study aimed to elucidate the role of bacteria colonising mycorrhizal hyphae in organically b... more This study aimed to elucidate the role of bacteria colonising mycorrhizal hyphae in organically bound sulfur mobilisation, the dominant soil sulfur source that is not directly plant available. The effect of an intact mycorrhizal symbiosis with access to stable isotope organo-34S enriched soils encased in 35 µm mesh cores was tested in microcosms with Agrostis stolonifera and Plantago lanceolata. Hyphae and associated soil were sampled from static mesh cores with mycorrhizal ingrowth and rotating mesh cores that exclude mycorrhizal ingrowth as well as corresponding rhizosphere soil, while plant shoots were analysed for 34S uptake. Static cores increased uptake of 34S at early stages of plant growth when sulfur demand appeared to be high and harboured significantly larger populations of sulfonate mobilising bacteria. Bacterial and fungal communities were significantly different in the hyphospheres of static cores when compared to rotating cores, not associated with plant hosts. Shifts...

Foods

Leafy vegetables are associated with Listeriosis outbreaks due to contamination with Listeria mon... more Leafy vegetables are associated with Listeriosis outbreaks due to contamination with Listeria monocytogenes. To date, contradictory findings were reported on spinach, rocket, and kale, where some studies reported growth of L. monocytogenes, while others did not. Thus, the current study investigated the reason for conflicting findings by producing leafy vegetables, where cultivation factors were known for growth potential studies. Of all polytunnel produce, kale Nero di Toscana demonstrated the highest growth potential (2.56 log cfu g−1), followed by spinach F1 Cello (1.84 log cfu g−1), rocket Buzz (1.41 log cfu g−1), spinach F1 Trumpet (1.37 log cfu g−1), and finally rocket Esmee (1.23 log cfu g−1). Thus, plant species and variety influenced L. monocytogenes growth potentials. Moreover, significantly lower growth potentials of 0.3 log cfu g−1 were identified when rocket Buzz was cultivated in open fields (1.11 log cfu g−1) instead of a polytunnel. The opposite effect was observed fo...

The recently characterized multidrug-resistant clone of the animal and human zoonotic pathogen Rh... more The recently characterized multidrug-resistant clone of the animal and human zoonotic pathogen Rhodococcus equi, MDR-RE 2287, has been circulating among horse farms in the United States (US) since the early 2000’s. Here, we report the first documented detection of the MDR-RE 2287 clone outside the US. The finding highlights the risk of MDR-RE spreading internationally with the movement of horses.

382 Do organic acids contribute to bioweathering rates? ANDREW W. BRAY*, STEEVE BONNEVILLE, ACHIM... more 382 Do organic acids contribute to bioweathering rates? ANDREW W. BRAY*, STEEVE BONNEVILLE, ACHIM SCHMALENBERGER, ERIC H. OELKERS AND LIANE G. BENNING Earth Surface Science Institute, SEE, University of Leeds, UK (* correspondence: a.w.bray@leeds.ac.uk) Géochimie et Biogéochimie Experimentale, CNRS, Toulouse, France. Biogéochimie et Modélisation du système Terre, DSTE, Université Libre de Bruxelles, Brussels, Belgium (steeve.bonneville@ulb.ac.be) Dept. of Life Sciences, University of Limerick, Ireland (Achim.Schmalenberger@ul.ie). Dept. of Earth Sciences, University College London, UK (e.oelkers@ucl.ac.uk). German Research Centre for Geosciences, GFZ, 14473, Potsdam, Germany (benning@gfz-potsdam.de).

Soil drainage and phosphorus (P) availability are considered indicators of management intensity i... more Soil drainage and phosphorus (P) availability are considered indicators of management intensity in pasture-based agriculture supporting livestock. However, microbial adaptations to P-availability according to soil drainage class are rarely investigated. We hypothesized that well-drained grasslands with high P-availability will sustain a distinctive soil microbiota when compared to poorly-drained grasslands with low-P availability. The relationship between soil drainage, plant available P and grassland microbial communities was evaluated among well-drained sites with high- or low-P and poorly-drained sites with high- or low-P, using fingerprinting, next-generation sequencing and quantitative PCR. Bacterial community structures were primarily affected by drainage as well as significantly separated between a combination of drainage and P availability i.e. low-P and poorly drained versus high-P and well drained. Abundance of the bacterial phylum Actinobacteria was significantly higher i...