Populus chitinase genes: structure, organization, and similarity of translated sequences to herbaceous plant chitinases (original) (raw)

References

  1. Bednarek, SY, Wilkins, TA, Dombrowski, JE, Raikhel, NV: A carboxyl-terminal propeptide is necessary for proper sorting of barley lectin to vacuoles of tobacco. Plant Cell 2: 1145–1155 (1990).
    Google Scholar
  2. Bradshaw, HD, Jr, Hollick, JB, Parsons, TJ, Clarke, HRG, Gordon, MP: Systemically wound-responsive genes in poplar trees encode proteins similar to sweet potato sporamins and legume Kunitz trypsin inhibitors. Plant Mol Biol 14: 51–59 (1990).
    Google Scholar
  3. Broglie, KE, Gaynor, JJ, Broglie, RM: Ethylene-regulated gene expression: molecular cloning of the genes encoding an endochitinase from Phaseolus vulgaris. Proc Natl Acad Sci USA 83: 6820–6824 (1986).
    Google Scholar
  4. Chrispeels, MJ, Raikhel, NV: Lectins, lectin genes, and their role in plant defense. Plant Cell 3: 1–9 (1991).
    Google Scholar
  5. Church, GM, Gilbert, W: Genomic sequencing. Proc Natl Acad Sci USA 81: 1991–1995 (1984).
    Google Scholar
  6. Corpet, F: Multiple sequence alignment with hierarchical clustering. Nucl Acids Res 16: 10881–10890 (1988).
    Google Scholar
  7. Davis, JM, Gordon, MP, Smit, BS: Assimilate movement dictates remote sites of wound-induced gene expression in poplar leaves. Proc Natl Acad Sci USA 88: 2393–2396 (1991).
    Google Scholar
  8. Deininger, PL: Random subcloning of sonicated DNA: application to shotgun DNA sequence analysis. Anal Biochem 129: 216–220 (1983).
    Google Scholar
  9. Dixon, RA, Lamb, CL: Molecular communication in interactions between plants and microbial pathogens. Ann Rev Plant Physiol Plant Mol Biol 41: 339–367 (1990).
    Google Scholar
  10. Feinberg, AP, Vogelstein, B: Addendum, ‘A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity’. Anal Biochem 137: 266–267 (1984).
    Google Scholar
  11. Felsenstein, J: PHYLIP manual version 3.3, University Herbarium, University of California, Berkeley, CA (1990).
    Google Scholar
  12. Frischauf, A-M, Lehrach, H, Poustka, A, Murray, N: Lambda replacement vectors carrying polylinker sequences. J Mol Biol 170: 827–842 (1983).
    Google Scholar
  13. Gaynor, JJ: Primary structure of an endochitinase mRNA from Solanum tuberosum. Nucl Acids Res 16: 5210 (1988).
    Google Scholar
  14. Goodall, GJ, Filipowicz, W: The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing. Cell 58: 473–483 (1989).
    Google Scholar
  15. Harpster, MH, Dunsmuir, P: Nucleotide sequence of the chitinase B gene of Serratia marcescens QMB1466. Nucl Acids Res 17: 5395 (1989).
    Google Scholar
  16. Hein, J: Unified approach to alignment and phylogenies. Meth Enzymol 183: 626–645 (1990).
    Google Scholar
  17. Jones, JDG, Grady, KL, Suslow, TV, Bedbrook, JR: Isolation and characterization of genes encoding two chitinase enzymes from Serratia marcescens. EMBO J 5: 467–473 (1986).
    Google Scholar
  18. Laflamme, D, Roxby, R: Isolation and nucleotide sequence of cDNA clones encoding potato chitinase genes. Plant Mol Biol 13: 249–250 (1989).
    Google Scholar
  19. Lipman, DJ, Pearson, WR: Rapid and sensitive protein similarity searches. Science 227: 1435–1441 (1985).
    Google Scholar
  20. Lucas, J, Henschen, A, Lottspeich, F, Vogeli, U, Boller, T: Amino-terminal sequence of ethylene-induced bean leaf chitinase reveals similarities to sugar-binding domains of wheat germ agglutinin. FEBS Lett 193: 208–210 (1985).
    Google Scholar
  21. Maniatis, T, Fritsch, EF, Sambrook, J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1982).
    Google Scholar
  22. Metraux, JP, Burkhart, W, Moyer, M, Dincher, S, Middlesteadt, W, Williams, S, Payne, G, Carnes, M, Ryals, J: Isolation of a complementary DNA encoding a chitinase with structural homology to a bifunctional lysozyme/chitinase. Proc Natl Acad Sci USA 86: 896–900 (1989).
    Google Scholar
  23. Parsons, TJ, Bradshaw, HD, Jr, Gordon, MP: Systemic accumulation of specific mRNAs in response to wounding in poplar trees. Proc Natl Acad Sci USA 86: 7895–7899 (1989).
    Google Scholar
  24. Payne, G, Ahl, P, Moyer, M, Harper, A, Beck, J, Meins, F, Jr, Ryals, J: Isolation of complementary DNA clones encoding pathogenesis-related proteins P and Q, two acidic chitinases from tobacco. Proc Natl Acad Sci USA 87: 98–102 (1990).
    Google Scholar
  25. Richardson, JS: The anatomy and taxonomy of protein structure. Adv Prot Chem 34: 167–339 (1981).
    Google Scholar
  26. Saiki, RK, Gelfand, DH, Stoffel, S, Scharf, SJ, Higuchi, R, Horn, GT, Mullis, KB, Erlich, HA: Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487–491 (1988).
    Google Scholar
  27. Samac, DA, Hironaka, CM, Yallaly, PE, Shah, DM: Isolation and characterization of the genes encoding basic and acidic chitinase in Arabidopsis thaliana. Plant Physiol 93: 907–914 (1990).
    Google Scholar
  28. Sanger, F, Nicklen, S, Coulson, AR: DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5468 (1977).
    Google Scholar
  29. Shinshi, H, Mohnen, D, Meins, F, Jr: Regulation of a plant pathogenesis-related enzyme: inhibition of chitinase and chitinase mRNA accumulation in cultured tobacco tissues by auxin and cytokinin. Proc Natl Acad Sci USA 84: 89–93 (1987).
    Google Scholar
  30. Shinshi, H, Neuhaus, J-M, Ryals, J, Meins, F, Jr: Structure of a tobacco endochitinase gene: evidence that different chitinase genes can arise by transposition of sequences encoding a cysteine-rich domain. Plant Mol Biol 14: 357–368 (1990).
    Google Scholar
  31. Stanford, A, Bevan, M, Northcote, D: Differential expression within a family of novel wound-induced genes in potato. Mol Gen Genet 215: 200–208 (1989).
    Google Scholar
  32. Swegle, M, Huang, J-K, Lee, G, Muthukrishnan, S: Identification of an endochitinase cDNA clone from barley aleurone cells. Plant Mol Biol 12: 403–412 (1989).
    Google Scholar
  33. Yanisch-Perron, C, Vieira, J, Messing, J: Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103–119 (1985).
    Google Scholar

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