Transposable elements and adaptation of host bacteria (original) (raw)
References
Arber., W., 1982. Das bacterium_E. coli_ under das Lupe der Molekulargenetiker. Mannheimer Forum 81/82. Herausgegeben von Boehringer Mannheim GmbH. 81p.
Arber, W., 1983. Bacterial inserted sequence elements and their influence on genetic stability and evolution. Proc. Nucleic Acids Res. 29:27–31. Google Scholar
Arber, W., 1990. Mechanisms in microbial evolution. J. Struct. Biol. 104:107–111. PubMed Google Scholar
Arber, W., 1991. Elements in microbial evolution. J. Mol. Evol. 33:4–12. PubMed Google Scholar
Arber, W., M. Hümbelin, P. Caspers, H.J. Reif, S. Iida & J. Meyer, 1980. Spontaneous mutations in the_Escherichia coli_ prophage P1 and IS-mediated processes. Cold Spring Harbor Symp. Quant. Biol. 45:38–40. Google Scholar
Arber, W., T. Naas & M. Blot, 1994. Genetic rearrangements in resting bacteria. FEMS Microbiol. Ecol. (in press).
Belfort, M., 1990. Phage T4 introns: self-splicing and mobility. Ann. Rev. Genet. 24:363–385. PubMed Google Scholar
Berg, C.M., D.E. Berg & E.A. Grosman, 1989. Transposable elements and the genetic engineering of bacteria. pp 879–925 in Mobile DNA, edited by D.E. Berg and M. Howe. ASM, Washington D.C. Google Scholar
Biel, S.W. & D.L. Hartl., 1981. Beneficial effects of Tn5 are independent of transposition. Genetics 97:s11. PubMed Google Scholar
Biel, S.W. & D.L. Hartl, 1983. Evolution of transposons: natural selection for Tn5 in_Escherichia coli_ K12. Genetics 103:581–592. PubMed Google Scholar
Blot, M., B. Hauer & G. Monnet, 1994. The Tn5-bleomycin resistance gene confers improved survival and growth advantage to_Escherichia coli_. Mol. Gen. Genet. 242:595–601. PubMed Google Scholar
Blot, M., J. Heitman & W. Arber, 1993. Tn5-mediated bleomycin resistance in_Escherichia coli_ requires the expression, of host genes. Mol. Microbiol. 8:1017–1024. PubMed Google Scholar
Blot, M., J. Meyer & W. Arber, 1991. Bleomycin-resistance gene derived from the transposon Tn5 confers selective advantage to_Escherichia coli_ K-12. Proc. Natl. Acad. Sci. USA. 88:9112–9116. PubMed Google Scholar
Campbell, A., 1981a. Evolutionary significance of accessory DNA elements in bacteria. Ann. Rev. Microbiol. 35:55–83. Google Scholar
Campbell, A., 1981b. Some questions about movable elemens and their implications. Cold Spring Harbor Symp. Quant. Biol. 45:1–9. Google Scholar
Campbell, A.M., D. Berg, D. Botstein, E. Lederberg, R. Novick, P. Starlinger & W. Szybalski, 1977. Nomenclature of transposable elements in prokaryotes. pp. 15–22 in DNA Insertion, Elements, Plasmids and Episomes, edited by A.I. Bukhari, J.A. Shapiro and S.L. Adhya. CSHL, Cold Spring Harbor. Google Scholar
Chao, L. & S.M. McBroom, 1985. Evolution of transposable elements: an IS10 insertion increases fitness in_Escherichia coli_. Mol. Biol. Evol. 2:359–369. PubMed Google Scholar
Chao, L., C. Vargas, B.B. Spear & E.C. Cox, 1983. Transposable elements as mutator genes in evolution. Nature 303:633–635. PubMed Google Scholar
Ciampi, M.S., M.B. Schmid & J.R. Roth, 1982. Transposon Tn10 provides a promoter for transcription of adjacent sequences. Proc. Natl. Acad. Sci. USA 79:5016–5020. PubMed Google Scholar
Condit, R., 1990. The evolution of transposable elements: conditions for establishment in bacterial populations. Evolution 44:347–359. Google Scholar
Condit, R., F. Stewart & B. Levin, 1988. The population biology of bacterial transposons: a priori conditions for maintenance as parasitic DNA. Am. Nat. 132:129–147. Google Scholar
Datta, N., B.W. Randolph & J.L. Rosner, 1983. Detection of chemicals that stimulate Tn9 tranposition in_Escherichia coli_. Mol. Gen. Genet. 189:245–250. PubMed Google Scholar
Doolittle, W.F. & C. Sapienza, 1980. Selfish genes, the phenotype paradigm and genome evolution. Nature 284:601–603. PubMed Google Scholar
Edlin, G., S.W. Lee & M.M. Green, 1986. Tn10 transposition does not respond to environmental stress. Mut. Res. 175:159–164. Google Scholar
Escoubas, J.M., M.F. Prère, O. Fayet, I. Salvignol, D. Galas, D. Zerbib & M. Chandler, 1991. Translational control of transposition activity of the bacterial insertion sequence IS1. EMBO J. 10:705–712. PubMed Google Scholar
Galas, D.J. & M. Chandler, 1989. Bacterial Insertion Sequences, pp. 109–162 in Mocile DNA, edited by D. Berg and M. Howe. ASM, Washington D.C. Google Scholar
Hall, B.G., 1988. Adaptive evolution that requires multiple spontaneous mutations I. Mutations involving an insertion sequence. Genetics 120:887–897. PubMed Google Scholar
Hall, B.G., 1991. Is the occurrence of some spontaneous mutations directed by environmental challenges? The New Biologist 3:729–733. PubMed Google Scholar
Hartl, D.L., D.E. Dykhuizen, R.D. Miller, L. Green & J. De Framond, 1983. Transposable element IS50 improves growth rate of_Escherichia coli_ cells without transposition. Cell 35:503–510. PubMed Google Scholar
Inouye, M. & J.S. Inouye, 1992. Retrons and multicopy single stranded DNA. J. Bacteriol. 174:2419–2424. PubMed Google Scholar
Jilk, R.A., J.C. Makris, L. Borchardt & W.S. Reznikoff, 1993. Implications of Tn5-Associated adjacent deletions. J. Bacteriol. 175:1264–1271. PubMed Google Scholar
Kolter, R., D.A. Siegele & A. Tormo, 1993. The stationary phase of the bacterial cycle. Ann. Rev. Microbiol. 47:855–74. Google Scholar
Kurlandzka, A., R.F. Rosenzweig & A. Adams, 1991. Identification of adaptive changes in an evolving population of_Escherichia coli_: the role of changes with regulatory and highly pleiotropic effects. Mol. Biol. Evol. 8:261–281. PubMed Google Scholar
Lawrence, J.G., H. Ochman & D.L. Hartl, 1992. The evolution of insertion sequences within enteric bacteria. Genetics 131:9–20. PubMed Google Scholar
Médigue, C., T. Roxel, P. Vigier, A. Hénaut & A. Danchin, 1991. Evidence for horizontal gene transfer in_Escherichia coli_ speciation. J. Mol. Biol. 222:851–856. PubMed Google Scholar
Mikkola, R. & C.G. Kurland, 1991. Is there a unique ribosome phenotype for naturally occurring_Escherichia coli?_ Biochimie 73:1061–1066. PubMed Google Scholar
Mikkola, R. & C.G. Kurland, 1992. Selection of laboratory wild-type phenotype from natural isolates of_Escherichia coli_ in chemostats. Mol. Biol. Evol. 9:394–402. PubMed Google Scholar
Modi, R.I., L.H. Castilla, S. Puskas-Rozsa, R.B. Helling & J. Adams, 1992. Genetic changes accompanying increased fitness in evolving populations of_Escherichia coli_. Genetics 130:241–249. PubMed Google Scholar
Naas, T., M. Blot, W.M. Fitch & W. Arber, 1994. Insertion sequence-related genetic rearrangements in resting_Escherichia coli_ K-12. Genetics 136:721–730. PubMed Google Scholar
Orgel, L.E. & F.H.C. Crick, 1980. Selfish DNA: the ultimate parasite. Nature 284:604–607. PubMed Google Scholar
Plasterk, R.H.A., 1991. Frameshift control of IS1 transposition. Trends Genet. 7:203–204. PubMed Google Scholar
Raabe, T., E. Jenny & J. Meyer, 1988. A selection cartridge for rapid detection and analysis of spontaneous mutations including insertions of transposable elements in Enterobacteriaceae. Mol. Gen. Genet. 215:176–180. PubMed Google Scholar
Rodriguez, H., E.T. Snow, U. Bhat & E.L. Loechler, 1992. An_Escherichia coli_ plasmid-based, mutational system in which_supF_ mutants are selectable — insertion elements dominate the spontaneous spectra. Mut. Res. 270:219–231. Google Scholar
Ross, D.G., J. Swan & N. Kleckner, 1979. Nearly precise excision: a new type of DNA alteration associated, with the translocatable element Tn10. Cell 16:733–738. PubMed Google Scholar
Rusina, O.Y., E.E. Mirskaya, I.V. Andreeva & A.G. Skavronskaya, 1992. Precise excision of transposons and point mutations induced by chemicals. Mut. Res. 283:161–168. Google Scholar
Sawyer, S.A., D.E. Dykhuizen, R.F. DuBose, L. Green, T. Mutangadure-Mhlanga, D.F. Wolczyk & D.L. Hartl, 1987. Distribution and abundance of insertion sequences among natural isolates of_Escherichia coli_. Genetics 115:51–63. PubMed Google Scholar
Schnetz, K. & B. Rak, 1992. IS5 — A mobile enhancer of transcription in_Escherichia coli_. Proc. Natl. Acad. Sci. USA. 89:1244–1248. PubMed Google Scholar
Scott, J.R., 1992. Sex and the single circle: conjugative transposition. J. Bacteriol. 174:6005–6018. PubMed Google Scholar
Sekine, Y. & E. Ohtsubo, 1989. Frameshifting is required for production of the transposase encoded by insertion sequence 1. Proc. Natl. Acad. Sci. USA, 86:4609–4613. PubMed Google Scholar
Sengstag, C. & W. Arber, 1983. IS2 insertion, is a major cause of spontaneous mutagenesis of the bacteriophage P1: non random distribution of target sites. EMBO J. 2:67–71. PubMed Google Scholar
Toussaint, A. & A. Résibois, 1983. Phage Mu: transposition as a life-style, pp. 105–158 in Mobile Genetic Elements edited by J. Shapiro, Acad. Press. Inc., Orlando. Google Scholar
Wang, A. & J.R. Roth, 1988. Activation of silent genes by transposons Tn5 and Tn10. Genetics 120:875–885. PubMed Google Scholar
Young, J.P.W., 1989. The population genetics of bacteria. pp 417–438 in Genetics of Bacterial Diversity edited by D.A. Hopwood and K.E. Chater, Acad. Press Lim, London. Google Scholar