A molecular phylogeny of dinoflagellate protists (Pyrrhophyta) inferred from the sequence of 24S rRNA divergent domains D1 and D8 (original) (raw)
Ausubel FM, Brent R, Kingston RE, Moore DD, Siedman JG, Smith JA, Struhl K (1987) Current protocols in molecular biology, vol. 1. Wiley Interscience, New York Google Scholar
Baroin A, Perasso R, Qu LH, Brugerolle G, Bachellerie JP, Adoutte A (1988) Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA. Proc Natl Acad Sci USA 85:3474–3478 Google Scholar
Bischoff H, Bold H (1963) Phycological studies IV. Some soil algae from Enchanted Rock and related algal species. University of Texas Publications, no. 6318
Bujak J, Williams G (1981) The evolution of dinoflagellates. Can J Bot 59:2077–2087 Google Scholar
Campbell DA, Kubo K, Clark CG, Boothroyd JC (1987) Precise identification of cleavage sites involved in the unusual processing of trypanosome ribosomal RNA. J Mol Biol 196:113–124 ArticlePubMed Google Scholar
Cedergren R, Gray MW, Abel Y, Sankoff D (1988) The evolutionary relationships among known life forms. J Mol Evol 28:98–112 PubMed Google Scholar
de Lanversin G, Jacq B (1983) Séquence de la région de coupure centrale du précurseur de l'ARN ribosomique 26S de drosophile. CR Acad Sci Ser III 296:1041–1044 Google Scholar
de Lanversin G, Jacq B (1989) Sequence and secondary structure of the central domain of_Drosophila_ 26S rRNA: a universal model for the central domain of the large rRNA containing the region in which the central break may happen. J Mol Evol 28:403–417 PubMed Google Scholar
Dodge JD (1984) Dinoflagellate taxonomy. In: Spector DL (ed) Dinoflagellates. Academic Press, New York, pp. 17–42 Google Scholar
Dörhöfer G, Davies E (1980) Evolution of archeopyle and tabulation in rhaetogonyaulacinean dinoflagellate cysts. R Ont Mus Life Sci Misc Publ, pp 1–91
Eaton G (1980) Nomenclature and homology in peridinialean dinoflagellate patterns. Palaeontology 23:667–688 Google Scholar
Eckenrode VK, Arnold J, Meagher RB (1985) Comparison of the nucleotide sequence of soybean 18S rRNA with the sequences of other small-subunit rRNAs. J. Mol Evol 21:259–269 Google Scholar
Engberg J, Nielsen H, Lenaers G, Murayama O, Fujitani H, Higashinakagawa T (1990) Comparison of primary and secondary 26S ribosomal RNA structures in two_Tetrahymena_ species: evidence for a strong evolutionary and structural constraint in expansion segments. J Mol Evol 30:514–521 PubMed Google Scholar
Fitch WM (1981) A non-sequential method for constructing trees and hierarchical classifications. J Mol Evol 18:30–37 ArticlePubMed Google Scholar
Fitch WM, Margoliash E (1967) Construction of phylogenetic trees. Science 155:279–284 PubMed Google Scholar
Gill LL, Hardman N, Chappell L, Qu LH, Nicoloso M, Bachellerie JP (1988) Phylogeny on_Onchocerca volvulus_ and related species deduced from rRNA sequence comparison. Mol Biochem Parasitol 28:69–76 PubMed Google Scholar
Goodman DK (1987) Dinoflagellate cysts in ancient and modern sediments. In: Taylor JFR (ed) The biology of dinoflagellates. Bot Monog 21:649–722
Gouy M, Li WH (1989a) Phylogenetic analysis based on ribosomal RNA sequences supports the archaebacterial tree rather than the eocyte tree. Nature 339:145–149 ArticlePubMed Google Scholar
Gouy M, Li WH (1989b) Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi. Mol Biol Evol 6:109–122 PubMed Google Scholar
Guillard R, Ryther J (1963) Studies on marine planktonic diatoms. I.Cyclotella nana Husted and_Detonula confervacea_ Cleve. Gran. Can J Microbiol 8:229–239 Google Scholar
Gutell RR, Fox EF (1988) A compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Res 16(suppl):r175-r269 PubMed Google Scholar
Hassouna N, Michot B, Bachellerie JP (1984) The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res 12:3563–3583 PubMed Google Scholar
Herzog M, Soyer MO (1981) Distinctive features of dinoflagellate chromatin. Absence of nucleosomes in a primitive species_Prorocentrum micans_. Eur J Cell Biol 23:295–302 PubMed Google Scholar
Kimura M (1968) Evolutionary rate at the molecular level. Nature 217:624–626 PubMed Google Scholar
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions. J Mol Evol 16:111–120 ArticlePubMed Google Scholar
Lane D, Pace B, Olsen G, Sthal D, Sogin M, Pace N (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82:6955–6959 PubMed Google Scholar
Leffers H, Kjems J, Ostergaard L, Larsen N, Garret R (1987) Evolutionary relationships amongst archaebacteria. A comparative study of 23S ribosomal RNAs of a sulphur-dependant extreme thermophile, an extreme halophile and a thermophilic methanogen. J Mol Biol 195:43–61 PubMed Google Scholar
Lenaers G, Nielsen H, Engberg J, Herzog M (1988) The secondary structure of large subunit rRNA divergent domains, a marker for protist evolution. BioSystems 21:215–222 ArticlePubMed Google Scholar
Lanaers G, Maroteaux L, Michot B, Herzog M (1989) Dinoflagellates in evolution. A molecular phylogenetic analysis of large-subunit ribosomal RNA. J Mol Evol 29(1):40–51 PubMed Google Scholar
Loeblich AR (1976) Dinoflagellate evolution: speculation and evidence. J Protozool 23:13–28 PubMed Google Scholar
Loeblich AR (1984) Dinoflagellate evolution. In: Spector DL (ed) Dinoflagellates. Academic, New York, pp 481–522 Google Scholar
Maniatis T, Fritsch E, Sambrook J (1982) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, p 545 Google Scholar
Michot B, Bachellerie JP (1987) Comparisons of large subunit rRNAs reveal some eukaryote specific elements of secondary structure. Biochemie 69:11–23 Article Google Scholar
Michot B, Hassouna N, Bachellerie JP (1984) Secondary structure of mouse 28S rRNA and general models for the folding of the large RNA in eukaryotes. Nucleic Acids Res 12:4259–4279 PubMed Google Scholar
Morrill LC, Loeblich AR (1981) A survey of body scales in dinoflagellates and a revision of_Cachonina_ and_Heterocapsa_. J Phycol 16(suppl):29 Google Scholar
Mouches C, Pauplin Y, Agarwal M, Lemieux L, Herzog M, Abadon M, Beyssat-Arnaouty V, Hyrien O, de Saint Vincent BR, Georghiou GP, Pasteur N (1990) Characterization of amplification core and esterase B1 gene responsible for insecticide resistance in_Culex_. Proc Natl Acad Sci USA 87:2574–2578 PubMed Google Scholar
Perasso R, Baroin A, Qu LH, Bachellerie JP, Adoutte A (1989) Origin of the algae. Nature 339:142–144 ArticlePubMed Google Scholar
Provasoli L (1963) Growing marine seaweeds. Proc Int Seaweed Symp 4:9–17 Google Scholar
Qu LH, Michot B, Bachellerie JP (1983) Improved methods for structure probing in large RNAs: a rapid heterologous sequencing approach is coupled to the direct mapping of nuclease accessible sites. Implication to the 5′ terminal domains of eukaryotic 28S rRNA. Nucleic Acids Res 17:5903–5920 Google Scholar
Qu LH, Hardman N, Gill LL, Chappell L, Nicoloso M, Bachellerie JP (1986) Phylogeny of helminths determined by rRNA sequence comparison. Mol Biochem Parasitol 20:93–99 PubMed Google Scholar
Qu LH, Nicoloso M, Bachellerie JP (1988) Phylogenetic calibration of the 5′ terminal domain of large rRNA achieved by determining twenty eucaryotic sequences. J Mol Evol 28:113–124 PubMed Google Scholar
Rizzo PJ (1987) Biochemistry of the dinoflagellate nucleus. In: Taylor FJR (ed) The biology of dinoflagellates. Bot Monogr 21:143–173
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425 PubMed Google Scholar
Sournia A (1984) Classification et nomenclature de divers dinoflagellés marins (classe des Dinophyceae). Phycologia 23: 345–355 Google Scholar
Sournia A (1986) Dinophyceae. In: Sournia A (ed) Atlas du phytoplancton marin, vol 1. Edition du CNRS, Paris, 219 p Google Scholar
Spencer DF, Collings JC, Schnare MN, Gray MW (1987) Multiple spacer sequence in the nuclear large subunit ribosomal RNA gene of_Crithidia fasciculata_. EMBO J 6:1063–1071 Google Scholar
Starr R (1964) The culture collection of algae at Indiana University. Am J Bot 51:1013–1044 Google Scholar
Studier JA, Keppler KJ (1988) A note on the neighbor-joining algorithm of Saitou and Nei. Mol Biol Evol 6:729–731 Google Scholar
Taylor F (1987) Taxonomy and classification. In: Taylor F (ed) The biology of dinoflagellates. Bot Monogr 21:723–731
Tuttle R, Loeblich A (1975) An optimal growth medium for the dinoflagellate_Cryptecodinium cohnii_. Phycologia 14(1): 1–8 Google Scholar
Vernet G, Sala-Rovira M, Maeder M, Jacques F, Herzog M (1990) Electrophoretic and DNA-binding properties of the major basic nuclear proteins from the histone-less eukaryote_Crypthecodinium cohnii_ (Pyrrhophyta). Biochim Biophys Acta 1048:281–289 PubMed Google Scholar