A method for the simultaneous alignment of three or more amino acid sequences (original) (raw)
Braunitzer G, Gehring-Muller R, Hilschmann N, Hilse K, Hobom G, Rudloff V, Wittman-Liebold B (1961) Die Konstitution des normalen adulten Humanhamoglobins. Hoppe-Seyler's Z Physiol Chem 325:283–286 Google Scholar
Carrell RW, Jeppsson J-O, Laurell C-B, Brennan SO, Owen MC, Vaughan L, Boswell DR (1982) Structure and variation of human α1-antritrypsin. Nature 298:329–334 ArticlePubMed Google Scholar
Chandra T, Stackhouse R, Kidd VJ, Woo SLC (1983) Isolation and sequence characterization of a cDNA clone of human antithrombin III. Proc Natl Acad Sci USA 80:1845–1848 PubMed Google Scholar
Dayhoff MO (ed) (1978) Atlas of protein sequence and structure vol 5 suppl 3. National Biomedical Research Foundation, Washington DC Google Scholar
Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model for evolutionary change. In: Dayhoff MO (ed) Atlas of protein sequence and structure, vol 5, suppl 3. National Biomedical Research Foundation Washington, DC, pp 345–358 Google Scholar
Doolittle RF (1981) Similar amino acid sequences: chance or common ancestry? Science 214:149–159 PubMed Google Scholar
Doolittle RF (1983) Angiotensinogen is related to the antitrypsin-antithrombin-ovalbumin family. Science 222:417–419 PubMed Google Scholar
Egorov TA, Feigina MY, Kazakov VK, Shakhparonov MI, Mimaleva SI, Ovchinnikov YA (1976) Full amino acid sequence of leghemoglobin I from yellow lupin nodules. Bioorg Khim 2:125–128 Google Scholar
Feng D-F, Johnson MS, Doolittle RF (1985) Aligning anion acid sequences: comparison of commonly used methods. J Mol Evol 21:112–125 Article Google Scholar
Fitch WM (1966) An improved method of testing for evolutionary homology. J Mol Biol 16:9–16 PubMed Google Scholar
Fitch WM (1970) Further improvements in the method of testing for evolutionary homology among proteins. J Mol Biol 49:1–14 ArticlePubMed Google Scholar
Fredman ML (1984) Algorithms for computing evolutionary similarity measures with length independent gap penalties. Computer science technical report number CS-062. Department of Electrical Engineering and Computer Science, University of California, San Diego. Google Scholar
Gotoh O (1982) An improved algorithm for matching biological sequences. J Mol Biol 162:705–708 ArticlePubMed Google Scholar
Haber JE, Koshland DE Jr (1970) An evaluation of the relatedness of proteins based on comparison of amino acid sequences. J Mol Biol 50:617–639 ArticlePubMed Google Scholar
Hejgaard J, Rasmussen SK, Brandt A, Svendsen I (1985) Sequence homology between barley endosperm protein Z and the protease inhibitors of the α1-antritrypsin family. FEBS Lett 180:89–94 Article Google Scholar
Hill RL, Harris CM, Naylor JF, Sams WM (1969) The partial amino acid sequence of human myoglobin. J Biol Chem 244: 2182–2194 PubMed Google Scholar
Hunt LT, Dayhoff MO (1980) A surprising new protein superfamily containing ovalbumin, antithrombin-III and alpha1-protease inhibitor. Biochem Biophys Res Commun 95:864–871 ArticlePubMed Google Scholar
Joubert FJ (1976) The amino acid sequence of three toxins (CM-2e, CM-4a and CM-7) from_Naje haje annulifera_ (Egyptian cobra) venom. Hoppe-Seyler's Z Physiol Chem 357:1735–1750 PubMed Google Scholar
Jue RA, Woodbury NW, Doolittle RF (1980) Sequence homologies among_E. coli_ ribosomal proteins: evidence for evolutionary related groupings and internal duplications. J Mol Evol 15:129–148 ArticlePubMed Google Scholar
Kernighan BW, Ritchie DM (1978) The C programming language. Prentice-Hall, Englewood Cliffs, New Jersey Google Scholar
Kortt AA, Burns JE, Trinick MJ, Appleby CA (1985) The amino acid sequence of hemoglobin I from_Parasponia andersonii_, a nonleguminous plant. FEBS Lett 180:55–60 Article Google Scholar
Kurachi K, Chandra T, Friezner-Degan SJ, White TT, Marchioro TL, Woo SLC, Davie EW (1981) Cloning and sequence of cDNA coding for α1-antritrypsin. Proc Natl Acad Sci USA 78: 6826–6830 PubMed Google Scholar
Lalthantluanga R, Braunitzer G (1979) Hemoglobins, XXIX. Sequence analysis of a dimeric hemoglobin (erythrocruorin), CTT-X, of_Chronomus thummi thummi_ (Diptera), Biochimie 61:725–731 PubMed Google Scholar
Maeda N, Tamiya N (1974) The primary structure of the toxin Lacticauda semifasciata III, a weak and reversibly acting neurotoxin from the venom of a sea snake,Lacticauda semifasciata. Biochem J 141:389–400 PubMed Google Scholar
Martinez HM (1983) An efficient method for finding repeats in molecular sequences. Nucleic Acids Res 11:4629–4636 PubMed Google Scholar
McLachlan AD (1971) Tests for comparing related amino-acid sequences: cytochrome c and cytochrome c551 J Mol Biol 61: 409–424 ArticlePubMed Google Scholar
McReynolds L, O'Malley BW, Nisbet AD, Fothergill JE, Givol D, Fields S, Robertson M, Brownlee GG (1978) Sequence of chicken ovalbumin mRNA. Nature 273:723–728 ArticlePubMed Google Scholar
Mebs D, Narita K, Iwanaga S, Samejima Y, Lee C-Y (1972) Purification, properties and amino acid sequence of α-bungarotoxin from the venom of_Bungarus multicinctus_. Hoppe-Seyler's Z Physiol Chem 353:243–262 PubMed Google Scholar
Murata M, Richardson JS, Sussman JL (1985) Simultaneous comparison of three protein sequences. Proc Natl Acad Sci USA 82:3073–3077 Google Scholar
Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequences of two proteins. J Mol Biol 48:443–453 ArticlePubMed Google Scholar
Ohkubo H, Kageyama R, Ujihara M, Hirose T, Inayama S, Nakanishi S (1983) Cloning and sequence analysis of cDNA for rat angiotensinogen. Proc Natl Acad Sci USA 80:2196–2200 PubMed Google Scholar
Peterson TE, Dudek-Wojciechowska G, Sotterup-Jensen L, Magnusson S (1979) In: Collen D, Wiman B, Verstraete M (eds) The physiological inhibitors of blood coagulation and fibrinolysis. Elsevier, Amsterdam, pp 43–54 Google Scholar
Sato S, Tamiya N (1971) The amino acid sequences of erabutoxins, neurotoxic proteins of sea-snake (Lacticauda semifasciata) venom. Biochem J 122:453–461 PubMed Google Scholar
Sellers PH (1974) On the theory and computation of evolutionary distances. SIAM J Appl Math 26:787–793 Article Google Scholar
Smith TF, Waterman MS, Fitch WM (1981) Comparative biosequence metrics. J Mol Evol 18:38–46 ArticlePubMed Google Scholar
Takagi T, Tobita M, Shikama K (1983) Amino acid sequence of dimeric myoglobin from_Cerethidea rhizophorarum_. BDA 745:32–36 Google Scholar
Viljoen CC, Botes DP (1974) Snake venom toxins. The purification and amino acid sequence of toxin TA from_Dendroaspis angusticeps_ venom. J Biol Chem 249:366–372 PubMed Google Scholar
Wakabayashi S, Matsubara H, Webster DA (1985) Amino acid sequence of_Vitreoscilla_ cytochrome O(S): a bacterial hemoglobin? Fed Proc 44:1058 Google Scholar
Waterman MS (1984) General methods of sequence comparison. Bull Math Biol 46:473–500 Article Google Scholar
Waterman MS, Smith TF, Beyer WA (1976) Some biological sequence metrics. Adv Math 20:367–387 Article Google Scholar
Waterman MS, Arratia R, Galas DJ (1984) Pattern recognition in several sequences: consensus and alignment. Bull Math Biol 46:515–527 ArticlePubMed Google Scholar