On the rate of DNA sequence evolution inDrosophila (original) (raw)
Aguade M (1988) Nucleotide sequence comparison of the_rp49_ gene region between_Drosophila subobscura_ and_D. melanogaster_. Mol Biol Evol 5:433–441 PubMedCAS Google Scholar
Anderson S, Bankier AT, Barrell BG, de Bruijn MHL, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457–465 ArticlePubMedCAS Google Scholar
Beverley SM, Wilson AC (1984) Molecular evolution in_Drosophila_ and the higher Diptera II. A time scale for fly evolution. J Mol Evol 21:1–13 ArticlePubMedCAS Google Scholar
Blackman RK, Meselson M (1986) Interspecific nucleotide sequence comparisons used to identify regulatory and structural features of the_Drosophila hsp82_ gene. J Mol Biol 188:499–515 ArticlePubMedCAS Google Scholar
Bodmer M, Ashburner M (1984) Conservation and change in the DNA sequences coding for alcohol dehydrogenase in sibling species of_Drosophila_. Nature 309:425–430 ArticlePubMedCAS Google Scholar
Britten RJ (1986) Rates of DNA sequence evolution differ between taxonomic groups. Science 231:1393–1398 ArticlePubMedCAS Google Scholar
Brown WM, Prager EM, Wang A, Wilson AC (1982) Mitochondrial DNA sequences of primates: tempo and mode of evolution. J Mol Evol 18:225–239 ArticlePubMedCAS Google Scholar
Caccone A, Amato GD, Powell JR (1988a) Rates and patterns of scnDNA and mtDNA divergence within the_Drosophila melanogaster_ subgroup. Genetics 118:671–683 PubMedCAS Google Scholar
Caccone A, DeSalle R, Powell JR (1988b) Calibration of the change in thermal stability of DNA duplexes and degree of base pair mismatch. J Mol Evol 27:212–216 ArticlePubMedCAS Google Scholar
Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecule of_Drosophila yakuba_: nucleotide sequence, gene organization, and genetic code. J Mol Evol 22:252–271 ArticlePubMedCAS Google Scholar
Cohn VH, Moore GP (1988) Organization and evolution of the alcohol dehydrogenase gene in_Drosophila_. Mol Biol Evol 5: 154–166 PubMedCAS Google Scholar
de Bruijn MHL (1983)Drosophila melanogaster mitochondrial DNA: a novel organization and genetic code. Nature 304:234–241 ArticlePubMed Google Scholar
DeSalle R, Freedman T, Prager EM, Wilson AC (1987) Tempo and mode of sequence evolution in mitochondrial DNA of Hawaiian_Drosophila_. J Mol Evol 26:157–164 ArticlePubMedCAS Google Scholar
Henikoff S, Eghtedarzadeh MK (1987) Conserved arrangement of nested genes at the Drosophila_Gart_ locus. Genetics 117:711–725 PubMedCAS Google Scholar
Henikoff S, Keene MA, Fechtel K, Fristrom JW (1986) Gene within a gene: nested_Drosophila_ genes encode unrelated proteins on opposite DNA strands. Cell 44:33–42 ArticlePubMedCAS Google Scholar
Ingolia TD, Craig EA (1982)Drosophila gene related to the major heat shock-induced gene is transcribed at normal temperatures and not induced by heat shock. Proc Natl Acad Sci USA 79:525–529 ArticlePubMedCAS Google Scholar
Keith TP, Riley MA, Kreitman M, Lewontin RC, Curtis D, Chambers G (1987) Sequence of the structural gene for xanthine dehydrogenase (rosy locus) in_Drosophila melanogaster_. Genetics 116:67–73 PubMedCAS Google Scholar
Kreitman M (1983) Nucleotide polymorphism at the alcohol dehydrogenase locus of_Drosophila melanogaster_. Nature 304:412–417 ArticlePubMedCAS Google Scholar
Lee CS, Curtis D, McCarron M, Love C, Gray M, Bender W, Chovnick A (1987) Mutations affecting expression of the_rosy_ locus in_Drosophila melanogaster_. Genetics 116:55–66 PubMedCAS Google Scholar
Lemeunier F, David JR, Tsacas L, Ashburner M (1986) The_melanogaster_ species group. In: Ashburner M, Carson HL, Thompson JN (eds) The genetics and biology of_Drosophila_, vol 3e. Academic Press, New York, pp 147–256 Google Scholar
Li W-H, Wu C-I, Luo C-C (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2:150–174 PubMed Google Scholar
Li W-H, Tanimura M, Sharp PM (1987) An evaluation of the molecular clock hypothesis using mammalian DNA sequences. J Mol Evol 25:330–342 PubMedCAS Google Scholar
Martinez-Cruzado JC, Swimmer C, Fenerjian MG, Kafatos FC (1988) Evolution of the autosomal chorion locus in_Drosophila_. I. General organization of the locus and sequence comparisons of genes_s15_ and_s19_ in evolutionarily distant species. Genetics 119:663–677 PubMedCAS Google Scholar
Moriyama E (1987) Higher rates of nucleotide substitution in_Drosophila_ than in mammals. Jpn J Genet 62:139 Google Scholar
Ochman H, Wilson AC (1987) Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J Mol Evol 26:74–86 ArticlePubMedCAS Google Scholar
Powell JR, Caccone A, Amato GD, Yoon C (1986) Rates of nucleotide substitution in_Drosophila_ mitochondrial DNA and nuclear DNA are similar. Proc Natl Acad Sci USA 83:9090–9093 ArticlePubMedCAS Google Scholar
Riley MA (1989) Nucleotide sequence of the_Xdh_ region in_Drosophila pseudoobscura_ and an analysis of the evolution of synonymous codons. Mol Biol Evol 6:33–52 PubMedCAS Google Scholar
Satta Y, Ishiwa H, Chigusa SI (1987) Analysis of nucleotide substitutions of mitochondrial DNAs in_Drosophila melanogaster_ and its sibling species. Mol Biol Evol 4:638–650 PubMedCAS Google Scholar
Schaeffer SW, Aquadro CF (1987) Nucleotide sequence of the_Adh_ gene region of_Drosophila pseudoobscura_; evolutionary change and evidence for an ancient gene duplication. Genetics 117:61–73 PubMedCAS Google Scholar
Shields DC, Sharp PM, Higgins DG, Wright F (1988) “Silent” sites in_Drosophila_ genes are not neutral: evidence of selection among synonymous codons. Mol Biol Evol 5:704–716 PubMedCAS Google Scholar
Solignac M, Monnerot M, Mounolou J-C (1986) Mitochondrial DNA evolution in the_melanogaster_ species subgroup of_Drosophila_. J Mol Evol 23:31–40 ArticlePubMedCAS Google Scholar
Throckmorton LH (1975) The phylogeny, ecology and geography of_Drosophila_. In: King RC (ed) Handbook of genetics, vol 3. Plenum Press, New York, pp 421–469 Google Scholar
Wienzierl R, Axton JM, Ghysen A, Akam M (1987)Ultrabithorax mutations in constant and variable regions of the protein coding sequence. Genes Devel 1:386–397 Google Scholar
Wilde CD, Akam M (1987) Conserved sequence elements in the 5′ region of the_Ultrabithorax_ transcription unit. EMBO J 6:1393–1401 PubMedCAS Google Scholar
Wong Y-C, Pustell J, Spoerel N, Kafatos FC (1985) Coding and potential regulatory sequences of a cluster of chorion genes in_Drosophila melanogaster_. Chromosoma 92:124–135 ArticlePubMedCAS Google Scholar