Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus (original) (raw)
Arkhipova I, Meselson M (2000) Transposable elements in sexual and ancient asexual taxa. Proc Natl Acad Sci USA 97:14473–14477 ArticleCASPubMed Google Scholar
Asíns MJ, Monforte AJ, Mestre PF, Carbonell-EA (1999) Citrus and Prunus _copia_-like retrotransposons. Theor Appl Genet 99:503–510 Article Google Scholar
Asíns MJ, Garcia MR, Ruiz C, Carbonell EA (2002) Molecular markers for the genetic analysis of apomixis. In: Jain SM, Brar DS, Ahloowalia BS (eds) Molecular techniques in crop improvement. Kluwer Academic Publishers, Dordrecht, pp 266–281
Balint-Kurti PJ, Clendennen SK, Dolezelová M, Valárik M, Dolezel J, Beetham PR, May GD (2000) Identification and chromosomal localization of the monkey retrotransposon in Musa sp. Mol Gen Genet 263:908–915 ArticleCASPubMed Google Scholar
Barber AM, Hizi A, Maizel JVJ, Hughes SH (1990) HIV-1 reverse transcriptase: structure predictions for the polymerase domain. AIDS Res Hum Retrov 6:1061–1072 CAS Google Scholar
Bernet GP, Mestre PF, Pina JA, Asíns MJ (2003) Molecular discrimination of lemon cultivars. HortScience (in press)
Bretó MP, Ruiz C, Pina JA, Asíns MJ (2001) The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Mol Phylog Evol 21:285–293 Article Google Scholar
Cameron JW, Frost HB (1968) Genetics, breeding and nucellar embryony. In: Reuther W, Batchelor LD, Webber HJ (eds) The citrus industry, vol II. Division of Agricultural Science, University of California, Berkeley, pp 325–370
Chalker DL, Sandmeyer SB (1992) Ty3 integrates within the region of RNA polymerase-III initiation. Genes Dev 6:117–128 CASPubMed Google Scholar
Chavanne F, Zhang DX, Liaud MF, Cerff R (1998) Structure and evolution of Cyclops: a novel giant retrotransposon of the Ty3/Gypsy family highly amplified in pea and other legume species. Plant Mol Biol 37:363–375 ArticleCASPubMed Google Scholar
Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1:19–21 CAS Google Scholar
Echenique V, Stamova B, Wolters P, Lazo G, Carollo VL, Dubcovsky J (2002) Frequencies of Ty1-copia and Ty3-gypsy retroelements within the Triticeae EST databases. Theor Appl Genet 104:840–844 Article Google Scholar
Fedoroff N (2000) Transposons and genome evolution in plants. Proc Natl Acad Sci USA 97:7002–7007 PubMed Google Scholar
Feschotte C, Jiang N, Wessler SR (2002) Plant transposable elements: where genetics meets genomics. Nature Rev 3:329–341 ArticleCAS Google Scholar
Flor HH (1956) The complementary genic systems in flax and flax rust. Adv Genet 8:29–54 Google Scholar
Friesen N., Brandes A, Heslop-Harrison JS (2001) Diversity, origin and distribution of retrotransposons (gypsy and copia) in Conifers. Mol Biol Evol 18:1176–1188 CASPubMed Google Scholar
Grandbastien MA (1998) Activation of plant retrotransposons under stress conditions. Trends Plant Sci 3:181–187 Article Google Scholar
Hickey DA (1982) Selfish DNA: a sexually-transmited nuclear parasite. Genetics 101:519–531 CASPubMed Google Scholar
Hirochika H, Sugimoto K, Otsuki Y, Kanda M (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci USA 93:7783–7788 CASPubMed Google Scholar
Kalendar R, Grob T, Regina M, Suoniemi A, Schulman A (1999) IRAP and REMAP: two new retrotransposon-based DNA fingerprinting techniques. Theor Appl Genet 98:704–711 CAS Google Scholar
Khan E, Mack JPG, Katz RA, Kulkosky J, Skalka AM (1991) Retroviral integrase domains: DNA binding and the recognition of LTR sequences. Nucleic Acids Res 19:851–860 CASPubMed Google Scholar
Kulkosky J, Jones KS, Katz RA, Mack JPG, Skalka AM (1992) Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases. Mol Cell Biol 12:2331–2338 CASPubMed Google Scholar
Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics (submitted)
Lankenau DH, Huijser P, Jansen E, Miedema K, Hennig W (1988) Micropia: a retrotransposon of Drosophila combining structural features of DNA viruses, retroviruses and non-viral transposable elements. J Mol Biol 204:233–46 CASPubMed Google Scholar
Malik HS, Eickbush TH (1999) Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J Virol 73:5186–5190 CASPubMed Google Scholar
Marionette S, Wessler SR (1997) Retrotransposon insertion into the maize waxy gene results in tissue –specific RNA processing. Plant Cell 9:967–978 ArticlePubMed Google Scholar
McClintock B (1984) The significance of responses of the genome to challenge. Science 226:792–801 Google Scholar
McDonald JF (1995) Transposable elements—possible catalysts of organismic evolution. Trends Ecol Evol 10:123–126 Article Google Scholar
Meyers BC, Tingey SV, Morgante M (2001) Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res 11:1660–1676 CASPubMed Google Scholar
Purugganan MD, Wessler SR (1994) Molecular evolution of Magellan, a maize Ty3/gypsy like retrotransposon. Proc Natl Acad Sci USA 91:11674–11678 CASPubMed Google Scholar
Raghuvanshi SS (1962) Cytogenetical studies in genus Citrus. IV. Evolution in genus Citrus. Cytologia 27:172–188 Google Scholar
Richter TE, Ronald PC (2000) The evolution of resistance genes. Plant Mol Biol 42:195–204 CASPubMed Google Scholar
Richter TE, Pryor AJ, Bennetzen JL, Hulbert SH (1995) New rust resistance specificities associated with recombination at the Rp1 complex in maize. Genetics 141:373–381 CASPubMed Google Scholar
Ruiz C, Asíns MJ (2003) Comparison between Poncirus and Citrus genetic linkage maps. Theor Appl Genet 106:826–836 CASPubMed Google Scholar
Ruiz C, Bretó MP, Asíns MJ (2000) A quick methodology to identify sexual seedlings in citrus breeding programs using SSR markers. Euphytica 112:89–94 CAS Google Scholar
Shcherban AB, Vaughan DA, Tomooka N, Kaga A (2001) Diversity in the integrase coding domain of a gypsy like retrotransposon among wild relatives of rice in the Oryza officinalis complex. Genetica 110:43–53 Article Google Scholar
Smyth DR, Kalitsis P, Joseph JL, Sentry JW (1989) Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila. Proc Natl Acad Sci USA 86:5015–5019 CASPubMed Google Scholar
Springer MS, Britten RJ (1993) Phylogenetic relationships of reverse transcriptase and RNAse H sequences and aspects of genome structure in the gypsy group of retrotransposons. Mol Biol Evol 10:1370–1379 CASPubMed Google Scholar
Suoniemi A, Tanskanen J, Schulman AH (1998) Gypsy like retrotransposons are widespread in the plant kingdom. Plant J 13:699–705 CASPubMed Google Scholar
Thomson KG, Thomas JE, Dietzgen RG (1998) Retrotransposon-like sequences integrated into the genome of pineaple, Anannas comosus. Plant Mol Biol 38:461–465 ArticleCASPubMed Google Scholar
Van der Vossen E, Rouppe van der Voort J, Kanyuka K, Bendahmane A, Sandbrink H, Baulcombe DC, Bakker J, Stiekema W, Klein-Lankhorst (2000) Homologues of a single resistance-gene cluster in potato confer resistance to distinct pathogens: a virus and a nematode. Plant J 23:567–576 PubMed Google Scholar
Van Ooijen JW, Voorips RE (2001) JoinMap 3.0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands
Vicient CM, Jääskeläinen M, Kalendar R, Schulman A (2001a) Active retrotransposons are a common feature of grass genomes. Plant Physiol 125:1283–1292 CASPubMed Google Scholar
Vicient CM, Kalendar R, Schulman A (2001b) Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants. Genome Res 11:2041–2049 ArticleCASPubMed Google Scholar
Wessler SR, Bureau TE, White SE (1995) LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr Opin Genet Dev 5:814–821 PubMed Google Scholar
Wicker T, Stein N, Albar L, Feuillet C, Schlagenhauf, Keller B (2001) Analysis of a contiguous 211-kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J 26:307–316 ArticleCASPubMed Google Scholar
Yang Z-N, Ye X-R, Choi S, Molina J, Moonan F, Wing RA, Roose ML, Mirkov TE (2001) Construction of a 1.2-Mb contig including the cistrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of P. trifoliata (L.) Raf. Genome 44:382–393 ArticleCASPubMed Google Scholar
Yang Z-N, Ye X-R, Choi S, Molina J, Roose ML, Mirkov TE (2003) Sequence analysis of a 282-kilobase region surrounding the citrus tristeza resistance gene (Ctv) locus in Poncirus trifoliata L. Raf. Plant Physiol 131:482–492 ArticleCASPubMed Google Scholar
Zhou Q, Haymer D (1998) Molecular structure of yoyo, a gypsy like retrotransposon from the Mediterranean fruit fly, Ceratitis capitata. Genetica 101:167–178 ArticleCAS Google Scholar