Simple-sequence repeat markers used in merging linkage maps of melon (Cucumis melo L.) (original) (raw)
Akashi Y, Fukunda N, Wako T, Masuda M, Kato K (2002) Genetic variation and phylogenetic relationships in East and South Asian melons, Cucumis melo L., based on the analysis of five isozymes. Euphytica 125:385–396 ArticleCAS Google Scholar
Aranzana MJ, Pineda A, Cosson P, Dirlewanger E, Ascasibar J, Cipriani G, Ryder CD, Testolin R, Abbott A, King GJ, Iezzoni AF, Arús P (2003) A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor Appl Genet 106:819–825 PubMedCAS Google Scholar
Areshchenkova T, Ganal MW (1999) Long tomato microsatellites are predominantly associated with centromeric regions. Genome 42:536–544 ArticlePubMedCAS Google Scholar
Baudracco-Arnas S, Pitrat M (1996) A genetic map of melon (Cucumis melo L.) with RFLP, RAPD, isozyme, disease resistance and morphological markers. Theor Appl Genet 93:57–64 ArticlePubMedCAS Google Scholar
Bryan GJ, Collins AJ, Stephenson P, Orry A, Smith JB, Gale MD (1997) Isolation and characterisation of microsatellites from hexaploid bread wheat. Theor Appl Genet 94:557–563 ArticleCAS Google Scholar
Chani E, Ashkenazi V, Hillel J, Veilleux E (2002) Microsatellite marker analysis of an anther-derived potato family: skewed segregation and gene-centromere mapping. Genome 45:236–242 ArticlePubMedCAS Google Scholar
Chiba N, Suwabe K, Nunome T, Hirai M (2003) Development of microsatellite markers in melon (Cucumis melo L.) and their application to major cucurbit crops. Breed Sci 53:21–27 ArticleCAS Google Scholar
Chin ECL (1996) Maize simple repetitive DNA sequences: abundance and allele variation. Genome 39:866–873 ArticlePubMedCAS Google Scholar
Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, McCouch SR, Parl WD, Ayres N, Cartinhour S (2000) Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theor Appl Genet 100:713–722 ArticleCAS Google Scholar
Danin-Poleg Y, Reis N, Baudracco-Arnas S, Pitrat M, Staub JE, Oliver M, Arús P, de Vicente CM, Katzir N (2000) Simple sequence repeats in Cucumis mapping and map merging. Genome 43:963–974 PubMedCAS Google Scholar
Danin-Poleg Y, Reis N, Tzuri G, Katzir N (2001) Development and characterisation of microsatellite markers in Cucumis. Theor Appl Genet 102:61–72 ArticleCAS Google Scholar
Danin-Poleg Y, Tadmor Y, Tzuri G, Reis N, Hirschberg J, Katzir N (2002) Construction of a genetic map of melon with molecular markers and horticultural traits, and localization of genes associated with ZYMV resistance. Euphytica 125:373–384 ArticleCAS Google Scholar
Dolcet-Sanjuan R, Claveria E, Llauradó M, Ortigosa A, Arús P (2001) Carnation (Dianthus caryophyllus L.) dihaploid lines resistant to Fusarium oxysporum f. sp. Dianthi. Acta Hortic 560:141–144 Google Scholar
Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15 Google Scholar
Dufour P, Johnsson C, Antoine-Michard S, Cheng R, Murigneux A, Beckert M (2001) Segregation distortion at marker loci: variation during microspore embryogenesis in maize. Theor Appl Genet 102:993–1001 ArticleCAS Google Scholar
Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat Theor Appl Genet 104:399–407 ArticlePubMedCAS Google Scholar
Fazio G, Staub JE, Chung SM (2002) Development and characterization of PCR markers in cucumber (Cucumis sativus L.). J Am Soc Hortic Sci 127:545–557 CAS Google Scholar
Garcia-Mas J, Monforte AJ, Arús P (2004) Phylogenetic relationships among Cucumis species based on the ribosomal internal transcribed spacer sequence and microsatellite markers. Plant Syst Evol 248:191–204 ArticleCAS Google Scholar
Gonzalo MJ (2003) Generación, caracterización molecular y evaluación morfológica de una población de líneas dihaploides en melón (Cucumis melo L.). PhD Dissertation, Universiad de Lleida
Guzy-Wróbelska J, Szarejko I (2003) Molecular and agronomic evaluation of wheat doubled haploid lines obtained through maize pollination and anther culture methods. Plant Breed 122:305–313 Article Google Scholar
Katzir N, Danin-Poleg Y, Tzuri G, Karchi A, Lavi U, Cregan PB (1996) Length polymorphisms and homologies of microsatellites in several Cucurbitaceae species. Theor Appl Genet 93:1282–1290 ArticlePubMedCAS Google Scholar
Kirkbride JH (1993) Biosystematic monograph of the genus Cucumis (Cucurbitaceae). Parkway, Boone Google Scholar
Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175 Google Scholar
Lander ES, Green P, Abrahamson J, Barlow A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181 ArticlePubMedCAS Google Scholar
Liebhard R, Koller B, Gianfranceschi L, Gessler C (2003) Creating a saturated reference map for the apple (Malus × domestica Borkh.) genome. Theor Appl Genet 106:1497–1508 PubMedCAS Google Scholar
Liu L, Kakihara F, Kato M (2004) Characterization of six varieties of Cucumis melo L. based on morphological and physiological characters, including shelf-life of fruit. Euphytica 135:305–313 Article Google Scholar
Manninen OM (2000). Associations between anther-culture response and molecular markers on chromosomes 2H, 3H and 4H of barley (Hordeum vulgare L.). Theor Appl Genet 100:57–62 ArticleCAS Google Scholar
Metzgar D, Bytof J, Wills C (2000) Selection against frameshift mutations limits microsatellite expansion in coding DNA. Genome Res 10:72–80 PubMedCAS Google Scholar
Mliki A, Staub JE, Zhangyong S, Ghorbel A (2001) Genetic diversity in melon (Cucumis melo L.): an evaluation of African germplasm. Genet Res Crop Evol 48:587–597 Article Google Scholar
Monforte AJ, Garcia-Mas J, Arús P (2003) Genetic variability in melon based on microsatellite variation. Plant Breed 122:153–157 Article Google Scholar
Monforte AJ, Eduardo I, Abad S, Arús P (2004a) Inheritance mode of fruit traits in melon. Heterosis for fruit shape and its correlation with genetic distance. Euphytica (in press)
Monforte AJ, Oliver M, Gonzalo MJ, Álvarez JM, Dolçet-Sanjuan R, Arús P (2004b) Identification of quantitative trait loci involved in fruit quality traits in melon. Theor Appl Genet 108:750–758 ArticleCAS Google Scholar
Morales M, Luís-Arteaga M, María Álvarez J, Dolcet-Sanjuan R, Monfort A, Arús P, Garcia-Mas J (2002) Marker saturation of the region flanking the gene NSV conferring resistance to the melon necrotic spot carmovirus (MNSV) in melon. J Am Soc Hortic Sci 127:540–544 CAS Google Scholar
Morales M, Roig E, Monforte AJ, Arús P, Garcia-Mas J (2004) Single-nucleotide polymorphisms detected in expressed sequence tags of melon (Cucumis melo L.). Genome 47:352–360 ArticlePubMedCAS Google Scholar
Oliver M, Garcia-Mas J, Cardús M, Pueyo N, López-Sesé AI, Arroyo M, Gómez-Paniagua H, Arús P, De Vicente MC (2001) Construction of a reference linkage map for melon. Genome 44:836–845 ArticlePubMedCAS Google Scholar
Ooijen JW van, Voorrips RE (2001) JoinMap 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen Google Scholar
Paris HS, Yonash N, Portnoy V, Mozes-Daube N, Tzuri G, Katzir N (2003) Assessment of genetic relationships in Cucurbita pepo (Cucurbitaceae) using DNA markers. Theor Appl Genet 106:971–978 PubMedCAS Google Scholar
Paterson AH, Lan TH, Reischmann KP, Chang C, Lin SC, Burow MD, Kowalski SP, Katsar CS, DelMonte TA, Feldmann KA, Schertz KF, Wendel JF (1996) Toward a unified genetic map of higher plants, transcending the monocot–dicot divergence. Nat Genet 14:380–382 ArticlePubMedCAS Google Scholar
Périn C, Hagen LS, de Conto V, Katzir N, Danin-Poleg Y, Portnoy V, Baudracco-Arnas S, Chadoeuf J, Dogimont C, Pitrat M (2002a) A reference map for Cucumis melo based on two recombinant inbred line populations. Theor Appl Genet 104:1017–1034 Article Google Scholar
Périn C, Hagen LS, Giovinazzo N, Besombes, D, Dogimont C, Pitrat M (2002b) Genetic control of fruit shape acts prior to anthesis in melon (Cucumis melo L.). Mol Gen Genomics 266:933–941 Article Google Scholar
Plomion C, O’Malley DM (1996) Recombination rate differences for pollen parents and seed parents in Pinus pinaster. Heredity 77:341–350 ArticleCAS Google Scholar
Ritschel PS, Lins TCL, Tristan RL, Buso GSC, Buso JA, Ferreira ME (2004) Development of microsatellite markers from an enriched genomic library for genetic analysis of melon (Cucumis melo L.). BMC Plant Biol 4:9 ArticlePubMed Google Scholar
Rozen A, Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana, Totowa, pp 365–386 Google Scholar
Scott KD, Eggler P, Seaton G, Rossetto M, Ablett EM, Lee LS, Henry RJ (2000) Analysis of SSRs derived from grape ESTs. Theor Appl Genet 100:723–726 ArticleCAS Google Scholar
Silberstein L, Kovalski I, Brotman Y, Perin C, Dogimont C, Pitrat M, Klingler J, Thompson G, Portnoy V, Katzir N, Perl-Treves R (2003) Linkage map of Cucumis melo including phenotypic traits and sequence-characterized genes. Genome 46:761–773 ArticlePubMedCAS Google Scholar
Stam P (1993) Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. Plant J 3:739–744 ArticleCAS Google Scholar
Stepansky A, Kovalski I, Perl-Treves R (1999) Intraspecific classification of melons (Cucumis melo L.) in view of their phenotypic and molecular variation. Plant Syst Evol 217:313–332 ArticleCAS Google Scholar
Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lipovich L, Cho YG, Ishii T, McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theor Appl Genet 100:697–712 ArticleCAS Google Scholar
Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411–422 PubMedCAS Google Scholar
Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78 ArticlePubMedCAS Google Scholar
Wang G, Hyne V, Chao S, Henry Y, Buyser J, Gale MD, Snape JW (1995) A comparison of male and female recombination frequency in wheat using RFLP maps of homoeologous group 6 and 7 chromosomes. Theor Appl Genet 91:744–746 ArticlePubMedCAS Google Scholar
Wang YH, Thomas CE, Dean RA (1997) A genetic map of melon (Cucumis melo L.) based on amplified fragment length polymorphism (AFLP) markers. Theor Appl Genet 95:791–798 ArticleCAS Google Scholar