The Universal Ancestor and the Ancestor of Bacteria Were Hyperthermophiles (original) (raw)
L Achenbach-Richter R Gupta KO Stetter CR Woese (1987)ArticleTitleWere the original eubacteria thermophiles?Syst Appl Microbiol9 34–39Occurrence Handle1:STN:280:DC%2BD3MnmtVKmuw%3D%3DOccurrence Handle11542087 CASPubMed Google Scholar
SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman (1997)ArticleTitleGapped BLAST ans PSI-BLAST: A new generation of protein database search programs.Nucleic Acids Res25 3389–3402Occurrence Handle9254694 PubMed Google Scholar
M Bocchetta S Gribaldo A Sanagelantoni P Cammarano (2000)ArticleTitlePhylogenetic depth of the bacterial genera Aquifex and Thermotoga inferrred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences.J Mol Evol50 366–380Occurrence Handle1:CAS:528:DC%2BD3cXivFyjur0%3DOccurrence Handle10795828 CASPubMed Google Scholar
C Brochier H Philippe (2002)ArticleTitleA non-hyperthermophilic ancestor for Bacteria.Nature417 244Occurrence Handle10.1038/417244aOccurrence Handle1:CAS:528:DC%2BD38Xjs1agtrs%3DOccurrence Handle12015592 ArticleCASPubMed Google Scholar
JR Brown CJ Douady MJ Italia WE Marshall JM Stanhope (2001)ArticleTitleUniversal trees based on large combined protein sequence data sets.Nat Genet28 281–285Occurrence Handle10.1038/90129Occurrence Handle1:CAS:528:DC%2BD3MXltFSmurw%3DOccurrence Handle11431701 ArticleCASPubMed Google Scholar
V Daubin M Gouy G Perrière (2001)ArticleTitleBacterial phylogeny using supertree approach.Genome Inform Ser Worshop Genome Inform12 155–164Occurrence Handle1:CAS:528:DC%2BD38XkvV2rt7Y%3D CAS Google Scholar
M Di Giulio (2000a)ArticleTitleThe universal ancestor lived in a thermophilic or hyperthermophilic environment.J Theor Biol203 203–213Occurrence Handle1:CAS:528:DC%2BD3cXhs12hsLk%3D CAS Google Scholar
M Di Giulio (2000b)ArticleTitleThe late stage of genetic code structuring took place at a high temperature.Gene261 189–195Occurrence Handle1:CAS:528:DC%2BD3MXmvF2ltA%3D%3D CAS Google Scholar
M Di Giulio (2001)ArticleTitleThe universal ancestor was a thermophile or a hyperthermophile.Gene281 11–17Occurrence Handle10.1016/S0378-1119(01)00781-8Occurrence Handle1:CAS:528:DC%2BD3MXptFelsL8%3DOccurrence Handle11750123 ArticleCASPubMed Google Scholar
M Di Giulio (2003a)ArticleTitleThe universal ancestor was a thermophile or a hyperthermophile: tests and further evidence.J Theor Biol221 425–436 Google Scholar
M Di Giulio (2003b)ArticleTitleThe ancestor of the Bacteria domain was a hyperthermophile.J Theor Biol224 277–283Occurrence Handle1:CAS:528:DC%2BD3sXms1yjsb4%3D CAS Google Scholar
P Forterre (1995)ArticleTitleThermoreduction, a hypothesis for the origin of prokaryotes.CR Acad Sci Paris318 415–422Occurrence Handle1:CAS:528:DyaK2MXmslSgsbk%3D CAS Google Scholar
P Forterre (1998) Was our ancestor actually hyperthermophile? J Wiegel M Adams (Eds) Thermophiles and the origin of life. Taylor & Francis London 137–146 Google Scholar
P Forterre (2001)ArticleTitleGenomics and early cellular evolution. The origin of the DNA world.CR Acad Sci Paris324 1067–1076Occurrence Handle10.1016/S0764-4469(01)01403-2Occurrence Handle1:CAS:528:DC%2BD3MXpt1altL4%3D ArticleCAS Google Scholar
P Forterre (2002)ArticleTitleThe origin of DNA genomes and DNA replication proteins.Curr Opin Microbiol5 525–532Occurrence Handle10.1016/S1369-5274(02)00360-0Occurrence Handle1:CAS:528:DC%2BD38Xnt1Ggu7o%3DOccurrence Handle12354562 ArticleCASPubMed Google Scholar
P Forterre C Bouthier De La Tour H Philippe M Duguet (2000)ArticleTitleReverse gyrase from hyperthermophiles: Probable transfer of a thermoadaptation trait from archaea to bacetria.Trends Genet16 152–154Occurrence Handle10.1016/S0168-9525(00)01980-6Occurrence Handle1:CAS:528:DC%2BD3cXit1Sqsb4%3DOccurrence Handle10729828 ArticleCASPubMed Google Scholar
N Galtier JR Lobry (1997)ArticleTitleRelationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes.J Mol Evol44 632–636Occurrence Handle1:CAS:528:DyaK2sXjslGqsbc%3DOccurrence Handle9169555 CASPubMed Google Scholar
N Galtier N Tourasse M Gouy (1999)ArticleTitleA nonhyperthermophilic common ancestor to extant life forms.Science283 220–221Occurrence Handle10.1126/science.283.5399.220Occurrence Handle1:CAS:528:DyaK1MXjtlentA%3D%3DOccurrence Handle9880254 ArticleCASPubMed Google Scholar
N Glansdorff (2000)ArticleTitleAbout the last common ancestor, the universal life-tree and lateral gene transfer: a reappraisal.Mol Microbiol38 177–185Occurrence Handle10.1046/j.1365-2958.2000.02126.xOccurrence Handle1:CAS:528:DC%2BD3cXotVGqtrc%3DOccurrence Handle11069646 ArticleCASPubMed Google Scholar
MB Jacobs MJ Gerstein (1960) Handbook of microbiology. van Nostrand London Google Scholar
NG Holm (1992)ArticleTitleMarine hydrothermal systems and the origin of life.Origins Life Evol Biosph22 1–241Occurrence Handle1:CAS:528:DyaF3MXivVeltg%3D%3D CAS Google Scholar
P Lopez-Garcia D Moreira (1998)ArticleTitleMetabolic symbiosis at the origin of eukaryotes.Trends Biochem Sci24 88–93Occurrence Handle10.1016/S0968-0004(98)01342-5 Article Google Scholar
JL Maidak GJ Olsen N Larsen R Overbeek MJ McCaughey CR Woese (1997)ArticleTitleThe RDP (ribosomal database project).Nucleic Acids Res25 109–110Occurrence Handle9016515 PubMed Google Scholar
W Martin M Hoffmeister C Rotte K Henze (2001)ArticleTitleAn overview of endosymbiotic models for the origin of eukaryotes, their ATP-producing organelles mitocondria and hydrogenosomes, and their heterotrophic lifestyle.Biol Chem382 1521–1539Occurrence Handle1:CAS:528:DC%2BD38XktlOntQ%3D%3DOccurrence Handle11767942 CASPubMed Google Scholar
O Matte-Tailliez C Brochier P Forterre H Philippe (2002)ArticleTitleArchaeal phylogeny based on ribosomal proteins.Mol Biol Evol19 631–639Occurrence Handle1:CAS:528:DC%2BD38XjsFakurs%3DOccurrence Handle11961097 CASPubMed Google Scholar
EG Nisbet NH Sleep (2001)ArticleTitleThe habitat and nature of early life.Nature409 1083–1091Occurrence Handle1:STN:280:DC%2BD3M7lvFKjtw%3D%3DOccurrence Handle11234022 CASPubMed Google Scholar
GJ Olsen CR Woese R Overbeek (1994)ArticleTitleThe winds of (evolutionary) change: breathing new life into microbiology.J Bacter176 1–6Occurrence Handle1:STN:280:ByuC3M%2FitFY%3DOccurrence Handle8282683 CASPubMed Google Scholar
NR Pace (1991)ArticleTitleOrigin of life—Facing up to the physical setting.Cell65 531–533Occurrence Handle1:CAS:528:DyaK3MXktVehu7s%3DOccurrence Handle1709590 CASPubMed Google Scholar
Nr Pace GJ Olsen CR Woese (1986)ArticleTitleRibosomal RNA phylogeny and the primary lines of evolutionary descent.Cell45 325–326Occurrence Handle1:CAS:528:DyaL28XktVahtbg%3DOccurrence Handle3084106 CASPubMed Google Scholar
JT Staley MP Bryant N Plennig JG Holt (1984) Bergey’s manual of systematic (WR Hensyl, ed), Vol 3. Lippincott Williams & Wilkins Philadelphia Google Scholar
KO Stetter (1995)ArticleTitleMicrobial life in hyperthermal environments.ASM News61 285–290 Google Scholar
DL Swofford (1993) PAUP: Phylogenetic analysis using parsimony, version 3.1.1. Laboratory of Molecular Systematics, Smithsonian Institutions Washington, DC Google Scholar
DL Swofford (1998) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10 (PPC). Sinauer Associates Sunderland, MA Google Scholar
JD Thimpson TJ Gibson F Plewniak F Jeanmougin DG Higgins (1997)ArticleTitleThe CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools.Nucleic Acids Res25 4876–4882Occurrence Handle1:CAS:528:DyaK1cXntFyntQ%3D%3DOccurrence Handle9396791 CASPubMed Google Scholar
G Wachtershauser (1988)ArticleTitleBefore enzymes and templates: Theory of surface metabolism.Microbiol Rev52 452–484Occurrence Handle1:STN:280:BiaC1c7jsVM%3DOccurrence Handle3070320 CASPubMed Google Scholar
G Wachtershauser (1998) The case for a hyperthermophilic, chemolithoautotrophic origin of life in an iron-sulfur world. J Weigel MWW Adams (Eds) Thermophiles: The keys to molecular evolution and the origin of life? Taylor & Francis London 47–57 Google Scholar
J Wiegel MWW Adams (Eds) (1998) Thermophiles: The keys to molecular evolution and the origin of life? Taylor & Francis London Google Scholar
CR Woese (1987)ArticleTitleBacterial evolution.Microbiol Rev51 221–271Occurrence Handle2439888 PubMed Google Scholar
CR Woese (2000)ArticleTitleInterpreting the universal phylogenetic tree.Proc Natl Acad Sci USA97 8392–8396Occurrence Handle1:CAS:528:DC%2BD3cXlt1Ggtbc%3DOccurrence Handle10900003 CASPubMed Google Scholar
CR Woese (2002)ArticleTitleOn the evolution of cells.Proc Natl Acad Sci USA99 8742–8747Occurrence Handle10.1073/pnas.132266999Occurrence Handle1:CAS:528:DC%2BD38XltF2hsbc%3DOccurrence Handle12077305 ArticleCASPubMed Google Scholar
TH Wonnacott RJ Wonnacott (1982) Introductory statistics. Wiley New York 281–304 Google Scholar
J Zhang M Nei (1997)ArticleTitleAccuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods.J Mol Evol44 IssueIDSuppl 1 S139–S146Occurrence Handle1:CAS:528:DyaK2sXhsFKjsLY%3DOccurrence Handle9071022 CASPubMed Google Scholar