Intra- and interindividual variation in gene expression in human adipose tissue (original) (raw)
Abderrahim-Ferkoune A, Bezy O, Astri-Roques S, Elabd C, Ailhaud G, Amri EZ (2004) Transdifferentiation of preadipose cells into smooth muscle-like cells: role of aortic carboxypeptidase-like protein. Exp Cell Res 293:219–228 ArticlePubMedCAS Google Scholar
Arvidsson E, Blomqvist L, Ryden M (2004) Depot-specific differences in perilipin mRNA but not protein expression in obesity. J Intern Med 255:595–601 ArticlePubMedCAS Google Scholar
Asch AS, Barnwell J, Silverstein RL, Nachman RL (1987) Isolation of the thrombospondin membrane receptor. J Clin Invest 79:1054–1061 PubMedCAS Google Scholar
Berndt J, Kloting N, Kralisch S, Kovacs P, Fasshauer M, Schon MR, Stumvoll M, Bluher M (2005) Plasma visfatin concentrations and fat depot-specific mRNA expression in humans. Diabetes 54:2911–2916 PubMedCAS Google Scholar
Bjorntorp P (1993) Regional obesity and NIDDM. Adv Exp Med Biol 334:279–285 PubMedCAS Google Scholar
Blanchette-Mackie EJ, Dwyer NK, Barber T, Coxey RA, Takeda T, Rondinone CM, Theodorakis JL, Greenberg AS, Londos C (1995) Perilipin is located on the surface layer of intracellular lipid droplets in adipocytes. J Lipid Res 36:1211–1226 PubMedCAS Google Scholar
Boeuf S, Klingenspor M, Van Hal NLW, Schneider T, Keijer J, KLaus S (2001) Differential gene expression in white and brown preadipocytes. Physiol Genomics 7:15–25 PubMedCAS Google Scholar
Bonafoux B, Lejeune M, Piquemal D, Quere R, Baudet A, Assaf L, Marti J, Aguilar-Martinez P, Commes T (2004) Analysis of remnant reticulocyte mRNA reveals new genes and antisense transcripts expressed in the human erythroid lineage. Haematologica 89:1434–1438 PubMedCAS Google Scholar
Borsook H, Lingrel JB, Scaro JL, Millette RL (1962) Synthesis of haemoglobin in relation to the maturation of erythroid cells. Nature 196:347–350 ArticlePubMedCAS Google Scholar
Bouchard C, Tremblay A, Despres JP, Nadeau A, Lupien PJ, Theriault G, Dussault J, Moorjani S, Pinault S, Fournier G (1990) The response to long-term overfeeding in identical twins. N Engl J Med 322:1477–1482 ArticlePubMedCAS Google Scholar
Cinti S (2002) Adipocyte differentiation and transdifferentiation: plasticity of the adipose organ. J Endocrinol Investig 25:823–835 CAS Google Scholar
Cinti S (2005) The adipose organ. Prostaglandins Leukot Essent Fat Acids 73:9–15 ArticleCAS Google Scholar
Dusserre E, Moulin P, Vidal H (2000) Differences in mRNA expression of the proteins secreted by the adipocytes in human subcutaneous and visceral adipose tissues. Biochim Biophys Acta 1500:88–96 PubMedCAS Google Scholar
Dydensborg AB, Herring E, Auclair J, Tremblay E, Beaulieu JF (2006) Normalizing genes for quantitative RT-PCR in differentiating human intestinal epithelial cells and adenocarcinomas of the colon. Am J Physiol Gastrointest Liver Physiol 290:G1067–G1074 ArticlePubMedCAS Google Scholar
Franke WW, Hergt M, Grund C (1987) Rearrangement of the vimentin cytoskeleton during adipose conversion: formation of an intermediate filament cage around lipid globules. Cell 49:131–141 ArticlePubMedCAS Google Scholar
Fu L, Liang JJ (2003) Alteration of protein–protein interactions of congenital cataract crystallin mutants. Investig Ophthalmol Vis Sci 44:1155–1159 Article Google Scholar
Gabrielsson BG, Johansson JM, Lonn M, Jernas M, Olbers T, Peltonen M, Larsson I, Lonn L, Sjostrom L, Carlsson B, Carlsson LM (2003) High expression of complement components in omental adipose tissue in obese men. Obes Res 11:699–708 PubMedCAS Google Scholar
Garcia Palacios V, Morita I, Murota S (2001) Expression of adipogenesis markers in a murine stromal cell line treated with 15-deoxy delta(12,14)-prostaglandin J2, interleukin-11, 9-cis retinoic acid and vitamin K2. Prostaglandins Leukot Essent Fat Acids 65:215–221 ArticleCAS Google Scholar
Gomez-Ambrosi J, Catalan V, Diez-Caballero A, Martinez-Cruz LA, Gil MJ, Garcia-Foncillas J, Cienfuegos JA, Salvador J, Mato JM, Fruhbeck G (2004) Gene expression profile of omental adipose tissue in human obesity. Faseb J 18:215–217 PubMedCAS Google Scholar
Gopal-Srivastava R, Cvekl A, Piatigorsky J (1998) Involvement of retinoic acid/retinoid receptors in the regulation of murine alphaB-crystallin/small heat shock protein gene expression in the lens. J Biol Chem 273:17954–17961 ArticlePubMedCAS Google Scholar
Grundmann U, Abel KJ, Bohn H, Lobermann H, Lottspeich F, Kupper H (1988) Characterization of cDNA encoding human placental anticoagulant protein (PP4): homology with the lipocortin family. Proc Natl Acad Sci USA 85:3708–3712 ArticlePubMedCAS Google Scholar
Hotta K, Gustafson TA, Ortmeyer HK, Bodkin NL, Nicolson MA, Hansen BC (1996) Regulation of obese (ob) mRNA and plasma leptin levels in rhesus monkeys. Effects of insulin, body weight, and non-insulin-dependent diabetes mellitus. J Biol Chem 271:25327–25331 ArticlePubMedCAS Google Scholar
Hube F, Lietz U, Igel M, Jensen PB, Tornqvist H, Joost HG, Hauner H (1996) Difference in leptin mRNA levels between omental and subcutaneous abdominal adipose tissue from obese humans. Horm Metab Res 28:690–693 ArticlePubMedCAS Google Scholar
Hunt CR, Ro JH, Dobson DE, Min HY, Spiegelman BM (1986) Adipocyte P2 gene: developmental expression and homology of 5′-flanking sequences among fat cell-specific genes. Proc Natl Acad Sci USA 83:3786–3790 ArticlePubMedCAS Google Scholar
Inuzuka H, Nanbu-Wakao R, Masuho Y, Muramatsu M, Tojo H, Wakao H (1999) Differential regulation of immediate early gene expression in preadipocyte cells through multiple signaling pathways. Biochem Biophys Res Commun 265:664–668 ArticlePubMedCAS Google Scholar
Iwamoto M, Shapiro IM, Yagami K, Boskey AL, Leboy PS, Adams SL, Pacifici M (1993) Retinoic acid induces rapid mineralization and expression of mineralization-related genes in chondrocytes. Exp Cell Res 207:413–420 ArticlePubMedCAS Google Scholar
Jakel S, Gorlich D (1998) Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells. EMBO J 17:4491–4502 ArticlePubMedCAS Google Scholar
Jonk LJ, de Jonge ME, Vervaart JM, Wissink S, Kruijer W (1994) Isolation and developmental expression of retinoic-acid-induced genes. Dev Biol 161:604–614 ArticlePubMedCAS Google Scholar
Keller C, Keller P, Marshal S, Pedersen BK (2003) IL-6 gene expression in human adipose tissue in response to exercise-effect of carbohydrate ingestion. J Physiol 550:927–931 ArticlePubMedCAS Google Scholar
Kirfel J, Kelter M, Cancela LM, Price PA, Schule R (1997) Identification of a novel negative retinoic acid responsive element in the promoter of the human matrix Gla protein gene. Proc Natl Acad Sci USA 94:2227–2232 ArticlePubMedCAS Google Scholar
Kissebah A, Vydelingum N, Murray R, Evans D, Hartz A, Kalkhoff R, Adams P (1982) Relation of body fat distribution to metabolic complications of obesity. J Clin Endocrinol Metab 54:254–260 ArticlePubMedCAS Google Scholar
Kojima S, Hayashi S, Shimokado K, Suzuki Y, Shimada J, Crippa MP, Friedman SL (2000) Transcriptional activation of urokinase by the Kruppel-like factor Zf9/COPEB activates latent TGF-beta 1 in vascular endothelial cells. Blood 95:1309–1316 PubMedCAS Google Scholar
Komatsubara I, Murakami T, Kusachi S, Nakamura K, Hirohata S, Hayashi J, Takemoto S, Suezawa C, Ninomiya Y, Shiratori Y (2003) Spatially and temporally different expression of osteonectin and osteopontin in the infarct zone of experimentally induced myocardial infarction in rats. Cardiovasc Pathol 12:186–194 ArticlePubMedCAS Google Scholar
Koyama Y, Katagiri S, Hanai S, Uchida K, Miwa M (1999) Poly(ADP-ribose) polymerase interacts with novel Drosophila ribosomal proteins, L22 and l23a, with unique histone-like amino-terminal extensions. Gene 226:339–345 ArticlePubMedCAS Google Scholar
Kubota T, Morozumi T, Shimizu K, Sugita N, Kobayashi T, Yoshie H (2001) Differential gene expression in neutrophils from patients with generalized aggressive periodontitis. J Periodontal Res 36:390–397 ArticlePubMedCAS Google Scholar
Kuniyasu A, Hayashi S, Nakayama H (2002) Adipocytes recognize and degrade oxidized low density lipoprotein through CD36. Biochem Biophys Res Commun 295:319–323 ArticlePubMedCAS Google Scholar
Lamounier-Zepter V, Ehrhart-Bornstein M (2006) Fat tissue metabolism and adrenal steroid secretion. Curr Hypertens Rep 8:30–34 PubMedCAS Google Scholar
Lefebvre AM, Laville M, Vega N, Riou JP, van Gaal L, Auwerx J, Vidal H (1998) Depot-specific differences in adipose tissue gene expression in lean and obese subjects. Diabetes 47:98–103 PubMedCAS Google Scholar
Linder K, Arner P, Flores-Morales A, Tollet-Egnell P, Norstedt G (2004) Differentially expressed genes in visceral or subcutaneous adipose tissue of obese men and women. J Lipid Res 45:148–154 ArticlePubMedCAS Google Scholar
Luo G, Ducy P, McKee MD, Pinero GJ, Loyer E, Behringer RR, Karsenty G (1997) Spontaneous calcification of arteries and cartilage in mice lacking matrix GLA protein. Nature 386:78–81 ArticlePubMedCAS Google Scholar
Mok SC, Wong KK, Chan RK, Lau CC, Tsao SW, Knapp RC, Berkowitz RS (1994) Molecular cloning of differentially expressed genes in human epithelial ovarian cancer. Gynecol Oncol 52:247–252 ArticlePubMedCAS Google Scholar
Montague C, Prins J, Sanders L, Zhang J, Sewter C, Digby J, Byrne C, O’Rahilly S (1998) Depot-related gene expression in human subcutaneous and omental adipocytes. Diabetes 47:1384–1391 PubMedCAS Google Scholar
Morroni M, Giordano A, Zingaretti MC, Boiani R, De Matteis R, Kahn BB, Nisoli E, Tonello C, Pisoschi C, Luchetti MM, Marelli M, Cinti S (2004) Reversible transdifferentiation of secretory epithelial cells into adipocytes in the mammary gland. Proc Natl Acad Sci USA 101:16801–16806 ArticlePubMedCAS Google Scholar
Pellis L, Franssen-Van Hal NL, Burema J, Keijer J (2003) The Intraclass Correlation Coefficient applied for evaluation of data correction, labeling methods and rectal biopsy sampling in DNA microarray experiments. Physiol Genomics 21:21 Google Scholar
Ramis JM, Franssen-van Hal NL, Kramer E, Llado I, Bouillaud F, Palou A, Keijer J (2002) Carboxypeptidase E and thrombospondin-1 are differently expressed in subcutaneous and visceral fat of obese subjects. Cell Mol Life Sci 59:1960–1971 ArticlePubMedCAS Google Scholar
Rice JS, Williamson MK, Price PA (1994) Isolation and sequence of the vitamin K-dependent matrix Gla protein from the calcified cartilage of the soupfin shark. J Bone Miner Res 9:567–576 ArticlePubMedCAS Google Scholar
Ruderman N, Chisholm D, Pi-Sunyer X, Schneider S (1998) The metabolically obese, normal-weight individual revisited. Diabetes 47:699–713 PubMedCAS Google Scholar
Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW (1996) Parallel human genome analysis: microarray-based expression monitoring of 1,000 genes. Proc Natl Acad Sci USA 93:10614–10619 ArticlePubMedCAS Google Scholar
Schoof E, Stuppy A, Harig F, Carbon R, Horbach T, Stohr W, Rascher W, Dotsch J (2004) Comparison of leptin gene expression in different adipose tissues in children and adults. Eur J Endocrinol 150:579–584 ArticlePubMedCAS Google Scholar
Smith KM, Lawn RM, Wilcox JN (1990) Cellular localization of apolipoprotein D and lecithin:cholesterol acyltransferase mRNA in rhesus monkey tissues by in situ hybridization. J Lipid Res 31:995–1004 PubMedCAS Google Scholar
Takahashi M, Nagaretani H, Funahashi T, Nishizawa H, Maeda N, Kishida K, Kuriyama H, Shimomura I, Maeda K, Hotta K, Ouchi N, Kihara S, Nakamura T, Yamashita S, Matsuzawa Y (2001) The expression of SPARC in adipose tissue and its increased plasma concentration in patients with coronary artery disease. Obes Res 9:388–393 PubMedCAS Google Scholar
Trayhurn P, Beattie JH (2001) Physiological role of adipose tissue: white adipose tissue as an endocrine and secretory organ. Proc Nutr Soc 60:329–339 ArticlePubMedCAS Google Scholar
Trayhurn P, Wood IS (2004) Adipokines: inflammation and the pleiotropic role of white adipose tissue. Br J Nutr 92:347–355 ArticlePubMedCAS Google Scholar
van der Meer-van Kraaij C, Kramer E, Jonker-Termont D, Katan MB, van der Meer R, Keijer J (2005) Differential gene expression in rat colon by dietary heme and calcium. Carcinogenesis 26:73–79 ArticlePubMedCAS Google Scholar
Viguerie N, Poitou C, Cancello R, Stich V, Clement K, Langin D (2005) Transcriptomics applied to obesity and caloric restriction. Biochimie 87:117–123 ArticlePubMedCAS Google Scholar
Vohl MC, Sladek R, Robitaille J, Gurd S, Marceau P, Richard D, Hudson TJ, Tchernof A (2004) A survey of genes differentially expressed in subcutaneous and visceral adipose tissue in men. Obes Res 12:1217–1222 ArticlePubMedCAS Google Scholar
Wang SM, Fong TH, Hsu SY, Chien CL, Wu JC (1997) Reorganization of a novel vimentin-associated protein in 3T3-L1 cells during adipose conversion. J Cell Biochem 67:84–91 ArticlePubMedCAS Google Scholar
Wang X, Klevitsky R, Huang W, Glasford J, Li F, Robbins J (2003) AlphaB-crystallin modulates protein aggregation of abnormal desmin. Circ Res 93(10):998–1005 ArticlePubMedCAS Google Scholar
Wang X, Seed B (2003) A PCR primer bank for quantitative gene expression analysis. Nucleic Acids Res 31:e154 ArticlePubMedCAS Google Scholar
Weigle DS, Kuijper JL (1996) Obesity genes and the regulation of body fat content. Bioessays 18:867–874 ArticlePubMedCAS Google Scholar
Wuttge DM, Romert A, Eriksson U, Torma H, Hansson GK, Sirsjo A (2001) Induction of CD36 by all-trans retinoic acid: retinoic acid receptor signaling in the pathogenesis of atherosclerosis. Faseb J 15:1221–1223 PubMedCAS Google Scholar
Xia Z, Cianflone K (2003) Acylation-stimulating protein precursor proteins in adipose tissue in human obesity. Metabolism 52:1360–1366 ArticlePubMedCAS Google Scholar
Yasuda K, Hirayoshi K, Hirata H, Kubota H, Hosokawa N, Nagata K (2002) The Kruppel-like Factor Zf9 and proteins in the Sp1 family regulate the expression of HSP47, a collagen-specific molecular chaperone. J Biol Chem 277:44613–44622 ArticlePubMedCAS Google Scholar