Comparative characterization of deletion derivatives of the modular xylanase XynA of Thermotoga maritima (original) (raw)

• Ali MK, Hayashi H, Karita S, Goto M, Kimura T, Sakka K, Ohmiya K (2001) Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysis. Biosci Biotechnol Biochem 65:41–47
  Article PubMed CAS Google Scholar
• Ali E, Zhao G, Sakka M, Kimura T, Ohmiya K, Sakka K (2005) Functions of Family-22 Carbohydrate-binding Module in Clostridium thermocellum Xyn10C. Biosci Biotechnol Biochem 69:160–165
  Article PubMed CAS Google Scholar
• Araki R, Ali MK, Sakka M, Kimura T, Sakka K, Ohmiya K (2004) Essential role of the family-22 carbohydrate-binding modules for β-1, 3-1,4-glucanase activity of Clostridium stercorarium Xyn10B. FEBS Lett 561:155–158
  Article PubMed CAS Google Scholar
• Black GW, Rixon JE, Clarke JH, Hazlewood GP, Theodorou MK, Morris P, Gilbert HJ (1996) Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem J 319:515–520
  PubMed CAS Google Scholar
• Black GW, Rixon JE, Clarke JH, Hazlewood GP, Ferreira LMA, Bolam DN, Gilbert HJ (1997) Cellulose binding domains and linker sequences potentiate the activity of hemicellulases against complex substrates. J Biotechnol 57:59–69
  Article PubMed CAS Google Scholar
• Bolam DN, Ciruela A, McQueen-Mason S, Simpson P, Williamson MP, Rixon JE, Boraston A, Hazlewood GP, Gilbert HJ (1998) Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity. Biochem J 331:775–781
  PubMed CAS Google Scholar
• Boraston AB, Kwan E, Chiu P, Warren RAJ, Kilburn DG (2003) Recognition and hydrolysis of noncrystalline cellulose. J Biol Chem 278:6120–6127
  Article PubMed CAS Google Scholar
• Boraston AB, McLean BW, Kormos JM, Alam M, Gilkes NR, Haynes CA, Tomme P, Kilburn DG, Warren RAJ (1999) Carbohydrate binding modules: diversity of structure and function. In: Gilbert HJ, Davies GJ, Henrissat B, Svensson B (eds) Recent advances in carbohydrate bioengineering. The Royal Society of Chemistry, Cambridge, pp 202–211
  Google Scholar
• Charnock SJ, Bolam DN,Turkenburg JP, Gilbert HJ, Ferreira LM, Davies GJ, Fontes CM (2000) The X6 thermostabilizing domain of xylanases are carbohydrate-binding modules: structure and biochemistry of the Clostridium thermocellum X6b domain. Biochemistry 39:5013–5021
  Article PubMed CAS Google Scholar
• Chhabra SR, Kelly RM (2002) Biochemical characterization of Thermotoga maritima endoglucanase Cel74 with and without a carbohydrate binding module (CBM). FEBS Lett 531:375–380
  Article PubMed CAS Google Scholar
• Clarke JH, Davidson K, Gilbert HJ, Fontes CMGA, Hazlewood GP (1996) A modular xylanase from mesophilic Cellulomonas fimi contains the same cellulose-binding and thermostabilizing domains as xylanases from thermophilic bacteria. FEMS Microbiol Lett 139:27–35
  Article PubMed CAS Google Scholar
• Coughlan MP, Hazlewood GP (1993) β-1,4-D-xylan-degrading enzyme systems: biochemistry, molecular biology and applications. Biotechnol Appl Biochem 17:259–289
  PubMed CAS Google Scholar
• Decelle B, Tsang A, Storm RK (2004) Cloning, functional expression and characterisation of three Phanerochaete chrysosporium endo-1,4-β-xylanases. Curr Genet 46:166–175
  Article PubMed CAS Google Scholar
• Devillard E, Bera-Maillet C, Flint HJ, Scott KP, Newbold CJ, Wallace RJ, Jounany JP, Forano E (2003) Characterization of XYN10B, a modular xylanase from the ruminl protozoan Polyplastron multivesiculatum, with a family 22 carbohydrate-binding module that binds to cellulose. Biochem J 373:495–503
  Article PubMed CAS Google Scholar
• Dias FMV, Goyal A, Gilbert HJ, Prates JAM, Ferreira LMA, Fontes CMGA (2004) The N-terminal family 22 carbohydrate-binding module of xylanase 10B of Clostridium thermocellum is not a thermostabilizing domain. FEMS Microbiol Lett 238:71–78
  PubMed CAS Google Scholar
• Fontes CMGA, Hazlewood GP, Morag E, Hall J, Hirst BA, Gilbert HJ (1995) Evidence for a general role for non-catalytic thermostabilizing domains in xylanases from thermophilic bacteria. Biochem J 307:151–158
  PubMed CAS Google Scholar
• Gilbert HJ, Bolam DN, Szabo L, Xie H, Williamson MP, Simpson PJ, Jamal S, Boraston AB, Kilburn DG, Warren RAJ (2002) An update on carbohydrate binding modules. In: Terri TT, Svensson B, Gilbert HJ, Feizi T (eds) Carbohydrate bioengineering interdisciplinay approches. The Royal Society of Chemistry, Cambridge, pp 89–98
  Google Scholar
• Gilkes NR, Henrissat B, Kilburn DG, Miller RC Jr, Warren RAJ (1991) Domains in microbial β-1,4-glycanases: Sequence conservation, function, and enzyme families. Microbiol Rev 55:303–315
  PubMed CAS Google Scholar
• Gill J, Rixon JE, Bolam DN, McQueen-Mason S, Simpson PJ, Williamson MP, Hazlewood GP, Gilbert HJ (1999) Type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism. Biochem J 342:473–480
  Article PubMed CAS Google Scholar
• Kim H, Jung KH, Pack MY (2000) Molecular characterization of xynX, a gene encoding a multidomain xylanase with a thermostabilizing domain from Clostridium thermocellum. Appl Microbiol Biotechnol 54:521–527
  Article PubMed CAS Google Scholar
• Kittur FS, Mangala SL, Abu Rus’d A, Kitaoka M, Tsujibo H, Hayashi K (2003) Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan. FEBS Lett 549:147–151
  Article PubMed CAS Google Scholar
• Kulkarni N, Shendye A, Rao M (1999) Molecular and biotechnological aspects of xylanases. FEMS Microbiol Rev 23:411–456
  Article PubMed CAS Google Scholar
• Lee Y-E, Lowe SE, Henrissat B, Zeikus JG (1993) Characterization of the active site and thermostability regions of endoxylanase from Thermoanaerobacterium saccharolyticum B6A-RI. J Bacteriol 175:5890–5898
  PubMed CAS Google Scholar
• Liebl W, Feil R, Gabelsberger J, Kellermann J, Schleifer KH (1992) Purification and characterization of a novel thermostable 4-α-glucanotransferase of Thermotoga maritima cloned in Escheerichia coli. Eur J Biochem 207:81–88
  Article PubMed CAS Google Scholar
• Linder M, Teeri TT (1997) The roles and function of cellulose-binding domains. J Biotechnol 57:15–28
  Article CAS Google Scholar
• Mangala SL, Kittur FS, Nishimoto M, Sakka K, Ohmiya K, Kitaoka M, Hayashi K (2003) Fusion of family VI cellulose binding domains to Bacillus halodurans xylanase increases its catalytic activity and substrate-binding capacity to insoluble xylan. J Mol Catal B Enzym 21:221–230
  Article CAS Google Scholar
• Meissner K, Wassenberg D, Liebl W (2000) The thermostabilizing domain of the modular xylanase XynA of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed-linkage β-1,3/β-1,4-glucan. Mol Microbiol 36:898–912
  Article PubMed CAS Google Scholar
• Millward-Sadler SJ, Poole DM, Henrissat B, Hazlewood GP, Clarke JH, Gilbert HJ (1994) Evidence for a general role for high-affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases. Mol Microbiol 11:375–382
  PubMed CAS Google Scholar
• Notenboom V, Boraston AB, Kilburn DG, Rose DR (2001) Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms. Biochemistry 40:6248–6256
  Article PubMed CAS Google Scholar
• Notenboom V, Boraston AB, Williams SJ, Kilburn DG, Rose DR (2002) High-resolution crystal structures of the lectin-like xylan binding domain from Streptomyces lividans xylanase 10A with bound substrates reveal a novel mode of xylan binding. Biochemistry 41:4246–4254
  Article PubMed CAS Google Scholar
• Ruile P, Winterhalter C, Liebl W (1997) Isolation and analysis of a gene encoding α-glucuronidase, an enzyme with a novel primary structure involved in the breakdown of xylan. Mol Microbiol. 23:2676–2279
  Article Google Scholar
• Scharpf M, Connelly GP, Lee GM, Boraston AB, Warren RA, McIntosh LP (2002) Site-specific characterization of the association of xylooligosaccharides with the CBM13 lectin-like xylan binding domain from Streptomyces lividans xylanase 10A by NMR spectroscopy. Biochemistry 41:4255–4263
  Article PubMed CAS Google Scholar
• Srisodsuk M, Lethio J, Linder M, Margolles-Clark E, Reinikainen T, Teeri TT (1997) Trichoderma reesei cellobiohydrolase disrupts the structure of starch. FEBS Lett 447:58–60
  Google Scholar
• Studier FW, Moffat BA (1986) Use of bacteriophage T7 RNA polymerase to directly selective high expression of cloned genes. J Mol Biol 189:113–130
  Article PubMed CAS Google Scholar
• Sunna A, Gibbs MD, Bergquist PL (2000) A novel thermostable multidomain 1,4-β-xylanase from Caldibacillus cellulovorans and effect of its xylan-binding domain on enzyme activity. Microbiology 146:2947–2955
  PubMed CAS Google Scholar
• Sunna A, Gibbs MD, Bergquist PL (2001) Identification of novel beta-mannan- and beta-glucan-binding modules: evidence for a superfamily of carbohydrate-binding modules. Biochem J 356:791–798
  Article PubMed CAS Google Scholar
• Tomme P, Warren RAJ, Miller RC Jr, Kilburn DG, Gilkes NR (1995) Cellulose-binding domains: classification and properties. In: Saddler JN, Penner MH (eds) Enzymatic degradation of insoluble carbohydrates. American chemical society symposium series 618. American Chemical Society Press, San Diego, CA, pp 142–163
  Google Scholar
• Warren RAJ (1996) Microbial hydrolysis of polysaccharides. Annu Rev Microbiol 50:183–212
  Article PubMed CAS Google Scholar
• Wassenberg D, Schurig H, Liebl W, Jaenicke R (1997) Xylanase XynA from the hyperthermophilic bacterium Thermotoga maritima: structure and stability of the recombinant enzyme and its isolated cellulosebinding domain. Protein Sci 6:1718–1726
  Article PubMed CAS Google Scholar
• Winterhalter C, Heinrich P, Candussio A, Wich G, Liebl W (1995) Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima. Mol Microbiol 15:431–444
  PubMed CAS Google Scholar
• Winterhalter C, Liebl W (1995) Two extremely thermostable xylanases of the hyperthermophilic bacterium Thermotoga maritima MSB8. Appl Environ Microbiol 61:1810–1815
  PubMed CAS Google Scholar
• Xie H, Gilbert HJ, Charnock SJ, Davies GJ, Williamson MP, Simpson PJ, Raghotaa S, Fontes CMGA, Dias FMV, Ferrera LMA, Bolam DN (2001) Clostridium thermocellum Xyn10B carbohydrate-binding module 22-2: the role of conserved amino acids in ligand binding. Biochemistry 40:9167–9176
  Article PubMed CAS Google Scholar
• Yanish-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mp18 and pUC19 vectors. Gene 33:103–109
  Article PubMed Google Scholar
• Zverlov V, Piotukh K, Dakhova O, Velikodvorskaya G, Borris R (1996) The multidomain xylanase A of the hyperthermophilic bacterium Thermotoga neapolitana is extremely thermoresistant. Appl Microbiol Biotechnol 45:245–247
  Article PubMed CAS Google Scholar