Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms (original) (raw)

• Abdelouas A, Lu YM, Lutze W, Nuttall HE (1998) Reduction of U(VI) to U(IV) by indigenous bacteria in contaminated ground waterJ. Contam. Hydrol. 35:217–233
  Article CAS Google Scholar
• Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A, White DC, Lowe M, Lovley DR (2003) Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquiferAppl. Environ. Microbiol. 69:5884–5891
  Article PubMed CAS Google Scholar
• Arias YM, Tebo BM (2003) Cr(VI) reduction by sulfidogenic and nonsulfidogenic microbial consortia Appl. Environ. Microbiol. 69:1847–1853
  Article PubMed CAS Google Scholar
• Barnett MO, Jardine PM, Brooks SC (2002) U(VI) adsorption to heterogeneous subsurface media: application of a surface complexation modelEnviron. Sci. Technol. 36:937–942
  Article PubMed CAS Google Scholar
• Bertsch PM, Hunter DB, Sutton SR, Bajt S, Rivers ML (1994) In-situ chemical speciation of uranium in soils and sediments by micro X-ray absorption spectroscopyEnviron. Sci. Technol. 28:980–984
  Article CAS Google Scholar
• Brooks SC, Fredrickson JK, Carroll SL, Kennedy DW, Zachara JM, Plymale AE, Kelly SD, Kemner KM, Fendorf S (2003) Inhibition of bacterial U(VI) reduction by calciumEnviron. Sci. Technol. 37:1850–1858
  Article PubMed CAS Google Scholar
• Coates JD, Chakraborty R, Lack JG, O’Connor SM, Cole KA, Bender KS, Achenbach LA (2001) Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas Nature 411:1039–1043
  Article PubMed CAS Google Scholar
• Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA, Chandra S, McGarrell DM, Schmidt TM, Garrity GM, Tiedje JM (2003) The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomyNucleic Acids Res. 31:442–443
  Article PubMed CAS Google Scholar
• Dunbar J, Ticknor LO, Kuske CR (2001) Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communitiesAppl. Environ. Microbiol. 67:190–197
  Article PubMed CAS Google Scholar
• Elias DA, Senko JM, Krumholz LR (2003) A procedure for quantitation of total oxidized uranium for bioremediation studiesJ. Microbiol. Methods 53:343–353
  Article PubMed CAS Google Scholar
• Finneran K, Housewright M, Lovley D (2002a) Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sedimentsEnviron. Microbiol. 4:510–516
  Article CAS Google Scholar
• Finneran KT, Anderson RT, Nevin KP, Lovley DR (2002b) Potential for bioremediation of uranium-contaminated aquifers with microbial U(VI) reductionSoil Sediment Contam. 11:339–357
  Article CAS Google Scholar
• Francis AJ, Dodge CJ, Lu FL, Halada GP, Clayton CR (1994) XPS and XANES studies of uranium reduction by Clostridium sp Environ. Sci. Technol. 28:636–639
  Article CAS Google Scholar
• Gentile M, Yan TF, Tiquia S, Fields M, Nyman J, Zhou J & Criddle C (2005) Stability in a denitrifying fluidized bed reactor. Microbiol Ecology (forthcoming)
• Gorby Y, Lovley D (1992) Enzymatic uranium precipitationEnviron. Sci. Technol. 26:205–207
  Article CAS Google Scholar
• Istok JD, Senko JM, Krumholz LR, Watson D, Bogle MA, Peacock A, Chang YJ, White DC (2004) In situ bioreduction of technetium and uranium in a nitrate-contaminated aquiferEnviron. Sci. Technol. 38:468–475
  Article PubMed CAS Google Scholar
• Kaplan CW, Kitts CL (2003) Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine contentJ. Microbiol. Methods 54:121–125
  Article PubMed CAS Google Scholar
• Kitts CL (2001) Terminal Restriction Fragment patterns: a tool for comparing microbial communities and assessing community dynamicsCurr. Issues Intest. Microbiol. 2:17–25
  PubMed CAS Google Scholar
• Kemner KM, Kelly SD, Orlandini KA, Tsapin AI, Goldfeld MG, Perfiliev YD, Nealson KH (2001) XAS investigations of Fe(VI)J. Synchrotron Radiat. 8:949–951
  Article PubMed CAS Google Scholar
• Kniemeyer O, Probian C, Rossello-Mora R, Harder J (1999) Anaerobic mineralization of quaternary carbon atoms: isolation of denitrifying bacteria on dimethylmalonateAppl. Environ. Microbiol. 65:3319–3324
  PubMed CAS Google Scholar
• Lane DJ, (1991) 16S/23S rRNA sequencing In: Stackebrandt E, Goodfellow M (eds), Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons Ltd., Chichester, England, pp 115–175
  Google Scholar
• Lovley DR, Phillips EJP, Gorby YA, Landa ER (1991) Microbial reduction of uraniumNature 350:413–416
  Article CAS Google Scholar
• Lovley DR, Roden EE, Phillips EJP, Woodward JC (1993) Enzymatic iron and uranium reduction by sulfate-reducing bacteriaMar. Geol. 113:41–53
  Article CAS Google Scholar
• Lytle FW, Greego RB, Sandston DR, Marques EC, Wong J, Spiro CL, Huffman GP, Huggins FE (1984) Measurements of soft X-ray absorption spectra with a fluorescent ion chamberNucl. Instrum. Methods Phys. Res. Sect. A 226:542–548
  Article CAS Google Scholar
• Marsh TL, Saxman P, Cole J, Tiedje J (2000) Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysisAppl. Environ. Microbiol. 66:3616–3620
  Article PubMed CAS Google Scholar
• Myers CR, Nealson KH (1988) Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptorScience 240: 1319–1321
  Article PubMed CAS Google Scholar
• Nevin KP, Finneran KT, Lovley DR (2003) Microorganisms associated with uranium bioremediation in a high-salinity subsurface sedimentAppl. Environ. Microbiol. 69:3672–3675
  Article PubMed CAS Google Scholar
• Newville M (2001) IFEFFIT: interactive XAFS analysis and FEFF fittingJ. Synchrotron Radiat. 8:322–324
  Article PubMed CAS Google Scholar
• Nyman JL, Williams SM & Criddle CS (2005) Bioengineering for the in-situ remediation of metals. In: Grassian VH (Ed) Environmental Catalysis. (pp 493–520) Taylor & Francis Boca Raton, FL
• Patterson RR, Fendorf S, Fendorf M (1997) Reduction of hexavalent chromium by amorphous iron sulfideEnviron. Sci. Technol. 31:2039–2044
  Article CAS Google Scholar
• Peterson ML, White AF, Brown GE, Parks GA (1997) Surface passivation of magnetite by reaction with aqueous Cr(VI): XAFS and TEM resultsEnviron. Sci. Technol. 31:1573–1576
  Article CAS Google Scholar
• Ressler T, Wong J, Roos J, Smith IL (2000) Quantitative speciation of Mn-bearing particulates emitted from autos burning (methylcyclopentadienyl)manganese tricarbonyl-added gasolines using XANES spectroscopyEnviron. Sci. Technol. 34:950–958
  Article CAS Google Scholar
• Riley RG, Zachara JM & Wobber FJ (1992) Chemical Contaminants on DOE Lands and Selection of Contaminant Mixtures for Subsurface Science Research. Report No. DOE/ER-0547T, Office of Energy Research, US Department of Energy, Washington, DC
• Sani RK, Peyton BM, Amonette JE, Geesey GG (2004) Reduction of uranium(VI) under sulfate-reducing conditions in the presence of Fe(III)-(hydr)oxides Geochim. Cosmochim. Acta 68:2639–2648
  Article CAS Google Scholar
• Schulze R, Spring S, Amann R, Huber I, Ludwig W, Schleifer KH, Kampfer P (1999) Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. novSyst. Appl. Microbiol. 22:205–214
  PubMed CAS Google Scholar
• Senko J, Istok J, Suflita J, Krumholz L (2002) In-situ evidence for uranium immobilization and remobilizationEnviron. Sci. Technol. 36:1491–1496
  Article PubMed CAS Google Scholar
• Shelobolina ES, O’Neill K, Finneran KT, Hayes LA, Lovley DR (2003) Potential for in situ bioremediation of a low-pH, high-nitrate uranium-contaminated groundwaterSoil Sediment Contam. 12:865–884
  Article CAS Google Scholar
• Suzuki Y, Kelly SD, Kemner KA, Banfield JF (2003) Microbial populations stimulated for hexavalent uranium reduction in uranium mine sedimentAppl. Environ. Microbiol. 69:1337–1346
  Article PubMed CAS Google Scholar
• Suzuki Y, Kelly SD, Kemner KM, Banfield JF (2004) Enzymatic U(VI) reduction by Desulfosporosinus speciesRadiochim. Acta 92:11–16
  Article CAS Google Scholar
• Swenson W, Arendt J, Wilson DS (2000) Artificial selection of microbial ecosystems for 3-chloroaniline biodegradationEnviron. Microbiol. 2:564–571
  Article PubMed CAS Google Scholar
• Waychunas GA, Apted MJ, Brown GE (1983) X-ray K-edge absorption spectra of Fe minerals and model compounds: near-edge structurePhys. Chem. Miner. 10:1–9
  Article CAS Google Scholar
• Widdel F, Pfennig N (1984) Dissimilatory sulfate- or sulfur-reducing bacteria In: Krieg NR, Holt JG (eds), Bergey’s Manual of Systematic Bacteriology 1. Williams and Wilkins, Baltimore, MD, pp. 663–679
  Google Scholar