Function reference (original) (raw)

All functions

[.applyInterType()](dot-applyInterType.html)

Generate pairs of interactions according to interaction types

[.estimateAFromSimulations()](dot-estimateAFromSimulations.html)

Get the interspecies interaction matrix A using leave-one-out method

[.getInteractions()](dot-getInteractions.html)

Generate interactions according to five types of interactions and their weights

[.isPosInt()](dot-isPosInt.html)

Check whether a number is a positive integer

[.replaceByZero()](dot-replaceByZero.html)

Replace one element with zero in a list

[powerlawA()](powerlawA.html)

Interaction matrix with Power-Law network adjacency matrix

[randomA()](randomA.html)

Generate random interaction matrix for GLV model

[randomE()](randomE.html)

Generate random efficiency matrix

[rdirichlet()](rdirichlet.html)

Generate dirichlet random deviates

[simulateConsumerResource()](simulateConsumerResource.html)

Consumer-resource model simulation

[simulateEventTimes()](simulateEventTimes.html)

Generate a vector of event times

[simulateGLV()](simulateGLV.html)

Generalized Lotka-Volterra (gLV) simulation

[simulateHubbell()](simulateHubbell.html)

Hubbell's neutral model simulation

[simulateHubbellRates()](simulateHubbellRates.html)

Hubbell's neutral model simulation applied to time series

[simulateRicker()](simulateRicker.html)

Generate time series with the Ricker model

[simulateSOI()](simulateSOI.html)

Self-Organised Instability model (SOI) simulation

[simulateStochasticLogistic()](simulateStochasticLogistic.html)

Stochastic Logistic simulation