Cooler (original) (raw)

Scalable quantitative maps

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pip install cooler  

conda install -c conda-forge -c bioconda cooler  

Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

Simple, sparse matrix data model

Fast, portable and efficient storage, powered by HDF5

Extensive command line interface, powered by Click

Flexible Python API, powered by NumPy, Pandas and h5py

Multiscale visualization, powered by HiGlass