Lorenzo Rovigatti | University of Oxford (original) (raw)

Papers by Lorenzo Rovigatti

Research paper thumbnail of Bottom-Up Colloidal Crystal Assembly with a Twist

Globally ordered colloidal crystal lattices have broad utility in a wide range of optical and cat... more Globally ordered colloidal crystal lattices have broad utility in a wide range of optical and catalytic devices, for example, as photonic band gap materials. However, the self-assembly of stereospecific structures is often confounded by polymorphism. Small free-energy differences often characterize ensembles of different structures, making it difficult to produce a single morphology at will. Current techniques to handle this problem adopt one of two approaches: that of the " top-down " or " bottom-up " methodology, whereby structures are engineered starting from the largest or smallest relevant length scales, respectively. However, recently, a third approach for directing high fidelity assembly of colloidal crystals has been suggested which relies on the introduction of polymer cosolutes into the crystal phase [Mahynski, N.; Panagiotopoulos, A. Z.; Meng, D.; Kumar, S. K. Nat. Commun. 2014, 5, 4472]. By tuning the polymer's morphology to interact uniquely with the void symmetry of a single desired crystal, the entropy loss associated with polymer confinement has been shown to strongly bias the formation of that phase. However, previously, this approach has only been demonstrated in the limiting case of close-packed crystals. Here, we show how this approach may be generalized and extended to complex open crystals, illustrating the utility of this " structure-directing agent " paradigm in engineering the nanoscale structure of ordered colloidal materials. The high degree of transferability of this paradigm's basic principles between relatively simple crystals and more complex ones suggests that this represents a valuable addition to presently known self-assembly techniques.

Research paper thumbnail of Quantitative description of the self-assembly of patchy particles into chains and rings

The Journal of Chemical Physics, 2012

We numerically study a simple fluid composed of particles having a hard-core repulsion complement... more We numerically study a simple fluid composed of particles having a hard-core repulsion complemented by two patchy attractive sites on the particle poles. An appropriate choice of the patch angular width allows for the formation of ring structures which, at low temperatures and low densities, compete with the growth of linear aggregates. The simplicity of the model makes it possible to compare simulation results and theoretical predictions based on the Wertheim perturbation theory, specialized to the case in which ring formation is allowed. Such a comparison offers a unique framework for establishing the quality of the analytic predictions. We find that the Wertheim theory describes remarkably well the simulation results.

Research paper thumbnail of Branching points in the low-temperature dipolar hard sphere fluid

The Journal of Chemical Physics, 2013

In this contribution, we investigate the low-temperature, low-density behaviour of dipolar hard-s... more In this contribution, we investigate the low-temperature, low-density behaviour of dipolar hard-sphere (DHS) particles, i.e., hard spheres with dipoles embedded in their centre. We aim at describing the DHS fluid in terms of a network of chains and rings (the fundamental clusters) held together by branching points (defects) of different nature. We first introduce a systematic way of classifying inter-cluster connections according to their topology, and then employ this classification to analyse the geometric and thermodynamic properties of each class of defects, as extracted from state-of-the-art equilibrium Monte Carlo simulations. By computing the average density and energetic cost of each defect class, we find that the relevant contribution to inter-cluster interactions is indeed provided by (rare) three-way junctions and by four-way junctions arising from parallel or anti-parallel locally linear aggregates. All other (numerous) defects are either intra-cluster or associated to low cluster-cluster interaction energies, suggesting that these defects do not play a significant part in the thermodynamic description of the self-assembly processes of dipolar hard spheres.

Research paper thumbnail of Computing the phase diagram of binary mixtures: A patchy particle case study

The Journal of Chemical Physics, 2013

We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy pa... more We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy particles and 3D mixtures of bi-functional and tetra-functional patchy particles by means of Monte Carlo simulations and Wertheim theory. We start by computing the critical points of the pure systems and then we investigate how the critical parameters change upon lowering the temperature. We extend the Successive Umbrella Sampling method to mixtures to make it possible to extract information about the phase behaviour of the system at a fixed temperature for the whole range of densities and compositions of interest.

Research paper thumbnail of Direct Simulation of the Self-Assembly of a Small DNA Origami

ACS Nano, 2016

By using oxDNA, a coarse-grained nucleotide-level model of DNA, we are able to directly simulate ... more By using oxDNA, a coarse-grained nucleotide-level model of DNA, we are able to directly simulate the self-assembly of a small 384-base-pair origami from single-stranded scaffold and staple strands in solution. In general, we see attachment of new staple strands occurring in parallel, but with cooperativity evident for the binding of the second domain of a staple if the adjacent junction is already partially formed. For a system with exactly one copy of each staple strand, we observe a complete assembly pathway in an intermediate temperature window; at low temperatures successful assembly is prevented by misbonding while at higher temperature the free-energy barriers to assembly become too large for assembly on our simulation time scales. For high-concentration systems involving a large staple strand excess, we never see complete assembly because there are invariably instances where two copies of the same staple both bind to the scaffold, creating a kinetic trap that prevents the complete binding of either staple. This mutual staple blocking could also lead to aggregates of partially formed origamis in real systems, and helps to rationalize certain successful origami design strategies.

Research paper thumbnail of Soft self-assembled nanoparticles with temperature-dependent properties

Nanoscale, 2016

The fabrication of versatile building blocks that reliably self-assemble into desired ordered and... more The fabrication of versatile building blocks that reliably self-assemble into desired ordered and disordered phases is amongst the hottest topics in contemporary materials science. To this end, microscopic units of varying complexity, aimed at assembling the target phases, have been thought, designed, investigated and built. Such a path usually requires laborious fabrication techniques, especially when specific functionalisation of the building blocks is required. Telechelic star polymers, i.e., star polymers made of a number of f di-block copolymers consisting of solvophobic and solvophilic monomers grafted on a central anchoring point, spontaneously self-assemble into soft patchy particles featuring attractive spots (patches) on the surface. Here we show that the tunability of such a system can be widely extended by controlling the physical and chemical parameters of the solution. Indeed, under fixed external conditions the self-assembly behaviour depends only on the number of arms and on the ratio of solvophobic to solvophilic monomers. However, changes in temperature and/or solvent quality make it possible to reliably change the number and size of the attractive patches. This allows the steering of the mesoscopic self-assembly behaviour without modifying the microscopic constituents. Interestingly, we also demonstrate that diverse combinations of the parameters can generate stars with the same number of patches but different radial and angular stiffness. This mechanism could provide a neat way of further fine-tuning the elastic properties of the supramolecular network without changing its topology.

Research paper thumbnail of Polymer brush under flow as an anchored microswimmer

Polymer brushes are increasingly used to tailor surface physicochemistry for various applications... more Polymer brushes are increasingly used to tailor surface physicochemistry for various applications such as wetting, adhesion of biological objects, implantable devices, etc. We perform Dissipative Particle Dynamics simulations to study the behavior of dense polymer brushes under flow in a slit-pore channel. We discover that the system displays flow inversion at the brush interface for several disconnected ranges of the imposed flow. We associate such phenomenon to collective polymer dynamics: a wave propagating on the brush surface. The relation between the wavelength, the amplitude and the propagation speed of the flow-generated wave is consistent with the solution of the Stokes equations when an imposed traveling wave is assumed as boundary condition (the famous Taylor's swimmer).

Research paper thumbnail of Structural properties of the dipolar hard-sphere fluid at low temperatures and densities

Soft Matter, 2012

Through extensive state-of-the-art numerical simulations, we study the behavior of the dipolar ha... more Through extensive state-of-the-art numerical simulations, we study the behavior of the dipolar hard sphere model at low temperatures and low densities, shedding light on a region of the phase diagram where a topological phase transition has long been thought to occur. We show that the system exhibits remarkable and unusual behaviors, like a very low density percolation locus and a stabilization of rings over chain structures. This unexpected abundance of rings comes from a delicate balance between the lower ring energy and the end-to-end chain entropy, and hints at a possible mechanism for the suppression of the gas-liquid phase separation. Our results open the possibility for refined theoretical approaches which, in addition to the previously encompassed chain and branched geometries, must also include the significant contribution arising from ring formation.

Research paper thumbnail of Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link

Soft Matter, 2012

Short blunt-ended DNA duplexes comprising 6 to 20 base pairs self-assemble into polydisperse semi... more Short blunt-ended DNA duplexes comprising 6 to 20 base pairs self-assemble into polydisperse semi-flexible chains due to hydrophobic stacking interactions between terminal base pairs. Above a critical concentration, which depends on temperature and duplex length, such chains order into liquid crystal phases. Here, we investigate the self-assembly of such double-helical duplexes with a combined numerical and theoretical approach. We simulate the bulk system employing the coarsegrained DNA model recently proposed by Ouldridge et al. [ J. Chem. Phys. 134, 08501 (2011) ].

Research paper thumbnail of On the gas–liquid phase separation and the self-assembly of charged soft dumbbells

Molecular Physics, 2013

ABSTRACT We investigate the phase behaviour of charged soft dumbbells, particles composed of two ... more ABSTRACT We investigate the phase behaviour of charged soft dumbbells, particles composed of two soft but oppositely charged sites, as a function of the separation between the sites. Through successive umbrella sampling Monte Carlo simulations, we evaluate the equilibrium particle density of states. For elongated dumbbells, we recover the expected critical behaviour. However, reducing the elongation we are unable to locate the gas–liquid critical point in the accessible region of temperature and density. Correspondingly, the self-assembly of the particles in ring structures becomes dominant with respect to the formation of chain-like structures. Our results enrich the debate on the competition between self-assembly and phase separation and contribute to the long-standing dilemma about the putative gas–liquid criticality in dipolar fluids.

Research paper thumbnail of Accurate phase diagram of tetravalent DNA nanostars

The Journal of Chemical Physics, 2014

We evaluate, by means of molecular dynamics simulations employing a realistic DNA coarsegrained m... more We evaluate, by means of molecular dynamics simulations employing a realistic DNA coarsegrained model, the phase behaviour and the structural and dynamic properties of tetravalent DNA nanostars, i.e. nanoconstructs completely made of DNA. We find that, as the system is cooled down, tetramers undergo a gas-liquid phase separation in a region of concentrations which, if the difference in salt concentration is taken into account, is comparable with the recently measured experimental phase diagram [S. Biffi et al, Proc. Natl. Acad. Sci, 110, 15633 (2013)]. We also present a meanfield free energy for modelling the phase diagram based on the bonding contribution derived by Wertheim in his studies of associating liquids. Combined with mass-action law expressions appropriate for DNA binding and a numerically evaluated reference free energy, the resulting free energy qualitatively reproduces the numerical data. Finally, we report information on the nanostar structure, e.g. geometry and flexibility of the single tetramer and of the collective behaviour, providing a useful reference for future small angle scattering experiments, for all investigated temperatures and concentrations.

Research paper thumbnail of Self and collective correlation functions in a gel of tetrahedral patchy particles

Research paper thumbnail of Gels of DNA Nanostars Never Crystallize

ACS Nano, 2014

made of tetravalent DNA nanostars are thermodinamically stable in a wide range of concentrations ... more made of tetravalent DNA nanostars are thermodinamically stable in a wide range of concentrations and for all experimentally accessible temperature. This provides the first soft matter example of a fully-bonded liquid more stable than a crystal.

Research paper thumbnail of Nonmonotonic Magnetic Susceptibility of Dipolar Hard-Spheres at Low Temperature and Density

Physical Review Letters, 2013

We investigate, via numerical simulations, mean field, and density functional theories, the magne... more We investigate, via numerical simulations, mean field, and density functional theories, the magnetic response of a dipolar hard sphere fluid at low temperatures and densities, in the region of strong association. The proposed parameter-free theory is able to capture both the density and temperature dependence of the ring-chain equilibrium and the contribution to the susceptibility of a chain of generic length. The theory predicts a nonmonotonic temperature dependence of the initial (zero field) magnetic susceptibility, arising from the competition between magnetically inert particle rings and magnetically active chains. Monte Carlo simulation results closely agree with the theoretical findings.

Research paper thumbnail of Computing the phase diagram of binary mixtures: A patchy particle case study

The Journal of Chemical Physics, 2013

We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy pa... more We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy particles and 3D mixtures of bi-functional and tetra-functional patchy particles by means of Monte Carlo simulations and Wertheim theory. We start by computing the critical points of the pure systems and then we investigate how the critical parameters change upon lowering the temperature. We extend the Successive Umbrella Sampling method to mixtures to make it possible to extract information about the phase behaviour of the system at a fixed temperature for the whole range of densities and compositions of interest.

Research paper thumbnail of Low temperature structural transitions in dipolar hard spheres: The influence on magnetic properties

Journal of Magnetism and Magnetic Materials, 2015

We investigate the structural chain-to-ring transition at low temperature in a gas of dipolar har... more We investigate the structural chain-to-ring transition at low temperature in a gas of dipolar hard spheres (DHS). Due to the weakening of entropic contribution, ring formation becomes noticeable when the effective dipole-dipole magnetic interaction increases. It results in the redistribution of particles from usually observed flexible chains into flexible rings. The concentration (ρ) of DHS plays a crucial part in this transition: at a very low ρ only chains and rings are observed, whereas even a slight increase of the volume fraction leads to the formation of branched or defect structures. As a result, the fraction of DHS aggregated in defect-free rings turns out to be a non-monotonic function of ρ. The average ring size is found to be a slower increasing function of ρ when compared to that of chains. Both theory and computer simulations confirm the dramatic influence of the ring formation on the ρ-dependence of the initial magnetic susceptibility (χ) when the temperature decreases. The rings due to their zero total dipole moment are irresponsive to a weak magnetic field and drive to the strong decrease of the initial magnetic susceptibility.

Research paper thumbnail of How soft repulsion enhances the depletion mechanism

Soft Matter, 2014

We investigate binary mixtures of large colloids interacting through soft potentials with small, ... more We investigate binary mixtures of large colloids interacting through soft potentials with small, ideal depletants. We show that softness has a dramatic effect on the resulting colloid-colloid effective potential when the depletant-to-colloid size ratio q is small, with significant consequences on the colloidal phase behaviour. We provide an exact relationship that allows us to obtain the effective pair potential for any type of colloid-depletant interaction in the case of ideal depletants, without having to rely on complicated and expensive full-mixture simulations. We also show that soft repulsion among depletants further enhances the tendency of colloids to aggregate. Our theoretical and numerical results demonstrate that--in the limit of small q--soft mixtures cannot be mapped onto hard systems and hence soft depletion is not a mere extension of the widely used Asakura-Oosawa potential.

Research paper thumbnail of When depletion goes soft

We investigate binary mixtures of large colloids interacting through soft potentials with small, ... more We investigate binary mixtures of large colloids interacting through soft potentials with small, ideal depletants. We show that softness has a dramatic effect on the resulting colloid-colloid effective potential when the depletant-to-colloid size ratio qqq is small, with significant consequences on the colloidal phase behaviour. We also provide an exact relation that allows us to obtain the effective pair potential for any type of colloid-depletant interactions in the case of ideal depletants, without having to rely on complicated and expensive full-mixture simulations. Our theoretical and numerical results demonstrate that - in the limit of small qqq - soft mixtures cannot be mapped onto hard systems and hence soft depletion is not a mere extension of the widely used Asakura-Oosawa potential.

Research paper thumbnail of Self-Assembly in Chains, Rings, and Branches: A Single Component System with Two Critical Points

Physical Review Letters, 2013

We study the interplay between phase separation and self-assembly in chains, rings and branched s... more We study the interplay between phase separation and self-assembly in chains, rings and branched structures in a model of particles with dissimilar patches. We extend Wertheim's first order perturbation theory to include the effects of ring formation and theoretically investigate the thermodynamics of the model. We find a peculiar shape for the vapor-liquid coexistence, featuring re-entrant behavior in both phases and two critical points, despite the single-component nature of the system. The emergence of the lower critical point is caused by the self-assembly of rings taking place in the vapor, generating a phase with lower energy and lower entropy than the liquid. Monte Carlo simulations of the same model fully support these unconventional theoretical predictions.

Research paper thumbnail of Temperature-induced structural transitions in self-assembling magnetic nanocolloids

Phys. Chem. Chem. Phys., 2015

With the help of a unique combination of density functional theory and computer simulations, we d... more With the help of a unique combination of density functional theory and computer simulations, we discover two possible scenarios, depending on concentration, for the hierarchical self-assembly of magnetic nanoparticles on cooling. We show that typically considered low temperature clusters, i.e. defect-free chains and rings, merge into more complex branched structures through only three types of defects: four-way X junctions, three-way Y junctions and two-way Z junctions. Our accurate calculations reveal the predominance of weakly magnetically responsive rings cross-linked by X defects at the lowest temperatures. We thus provide a strategy to fine-tune magnetic and thermodynamic responses of magnetic nanocolloids to be used in medical and microfluidics applications.

Research paper thumbnail of Bottom-Up Colloidal Crystal Assembly with a Twist

Globally ordered colloidal crystal lattices have broad utility in a wide range of optical and cat... more Globally ordered colloidal crystal lattices have broad utility in a wide range of optical and catalytic devices, for example, as photonic band gap materials. However, the self-assembly of stereospecific structures is often confounded by polymorphism. Small free-energy differences often characterize ensembles of different structures, making it difficult to produce a single morphology at will. Current techniques to handle this problem adopt one of two approaches: that of the " top-down " or " bottom-up " methodology, whereby structures are engineered starting from the largest or smallest relevant length scales, respectively. However, recently, a third approach for directing high fidelity assembly of colloidal crystals has been suggested which relies on the introduction of polymer cosolutes into the crystal phase [Mahynski, N.; Panagiotopoulos, A. Z.; Meng, D.; Kumar, S. K. Nat. Commun. 2014, 5, 4472]. By tuning the polymer's morphology to interact uniquely with the void symmetry of a single desired crystal, the entropy loss associated with polymer confinement has been shown to strongly bias the formation of that phase. However, previously, this approach has only been demonstrated in the limiting case of close-packed crystals. Here, we show how this approach may be generalized and extended to complex open crystals, illustrating the utility of this " structure-directing agent " paradigm in engineering the nanoscale structure of ordered colloidal materials. The high degree of transferability of this paradigm's basic principles between relatively simple crystals and more complex ones suggests that this represents a valuable addition to presently known self-assembly techniques.

Research paper thumbnail of Quantitative description of the self-assembly of patchy particles into chains and rings

The Journal of Chemical Physics, 2012

We numerically study a simple fluid composed of particles having a hard-core repulsion complement... more We numerically study a simple fluid composed of particles having a hard-core repulsion complemented by two patchy attractive sites on the particle poles. An appropriate choice of the patch angular width allows for the formation of ring structures which, at low temperatures and low densities, compete with the growth of linear aggregates. The simplicity of the model makes it possible to compare simulation results and theoretical predictions based on the Wertheim perturbation theory, specialized to the case in which ring formation is allowed. Such a comparison offers a unique framework for establishing the quality of the analytic predictions. We find that the Wertheim theory describes remarkably well the simulation results.

Research paper thumbnail of Branching points in the low-temperature dipolar hard sphere fluid

The Journal of Chemical Physics, 2013

In this contribution, we investigate the low-temperature, low-density behaviour of dipolar hard-s... more In this contribution, we investigate the low-temperature, low-density behaviour of dipolar hard-sphere (DHS) particles, i.e., hard spheres with dipoles embedded in their centre. We aim at describing the DHS fluid in terms of a network of chains and rings (the fundamental clusters) held together by branching points (defects) of different nature. We first introduce a systematic way of classifying inter-cluster connections according to their topology, and then employ this classification to analyse the geometric and thermodynamic properties of each class of defects, as extracted from state-of-the-art equilibrium Monte Carlo simulations. By computing the average density and energetic cost of each defect class, we find that the relevant contribution to inter-cluster interactions is indeed provided by (rare) three-way junctions and by four-way junctions arising from parallel or anti-parallel locally linear aggregates. All other (numerous) defects are either intra-cluster or associated to low cluster-cluster interaction energies, suggesting that these defects do not play a significant part in the thermodynamic description of the self-assembly processes of dipolar hard spheres.

Research paper thumbnail of Computing the phase diagram of binary mixtures: A patchy particle case study

The Journal of Chemical Physics, 2013

We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy pa... more We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy particles and 3D mixtures of bi-functional and tetra-functional patchy particles by means of Monte Carlo simulations and Wertheim theory. We start by computing the critical points of the pure systems and then we investigate how the critical parameters change upon lowering the temperature. We extend the Successive Umbrella Sampling method to mixtures to make it possible to extract information about the phase behaviour of the system at a fixed temperature for the whole range of densities and compositions of interest.

Research paper thumbnail of Direct Simulation of the Self-Assembly of a Small DNA Origami

ACS Nano, 2016

By using oxDNA, a coarse-grained nucleotide-level model of DNA, we are able to directly simulate ... more By using oxDNA, a coarse-grained nucleotide-level model of DNA, we are able to directly simulate the self-assembly of a small 384-base-pair origami from single-stranded scaffold and staple strands in solution. In general, we see attachment of new staple strands occurring in parallel, but with cooperativity evident for the binding of the second domain of a staple if the adjacent junction is already partially formed. For a system with exactly one copy of each staple strand, we observe a complete assembly pathway in an intermediate temperature window; at low temperatures successful assembly is prevented by misbonding while at higher temperature the free-energy barriers to assembly become too large for assembly on our simulation time scales. For high-concentration systems involving a large staple strand excess, we never see complete assembly because there are invariably instances where two copies of the same staple both bind to the scaffold, creating a kinetic trap that prevents the complete binding of either staple. This mutual staple blocking could also lead to aggregates of partially formed origamis in real systems, and helps to rationalize certain successful origami design strategies.

Research paper thumbnail of Soft self-assembled nanoparticles with temperature-dependent properties

Nanoscale, 2016

The fabrication of versatile building blocks that reliably self-assemble into desired ordered and... more The fabrication of versatile building blocks that reliably self-assemble into desired ordered and disordered phases is amongst the hottest topics in contemporary materials science. To this end, microscopic units of varying complexity, aimed at assembling the target phases, have been thought, designed, investigated and built. Such a path usually requires laborious fabrication techniques, especially when specific functionalisation of the building blocks is required. Telechelic star polymers, i.e., star polymers made of a number of f di-block copolymers consisting of solvophobic and solvophilic monomers grafted on a central anchoring point, spontaneously self-assemble into soft patchy particles featuring attractive spots (patches) on the surface. Here we show that the tunability of such a system can be widely extended by controlling the physical and chemical parameters of the solution. Indeed, under fixed external conditions the self-assembly behaviour depends only on the number of arms and on the ratio of solvophobic to solvophilic monomers. However, changes in temperature and/or solvent quality make it possible to reliably change the number and size of the attractive patches. This allows the steering of the mesoscopic self-assembly behaviour without modifying the microscopic constituents. Interestingly, we also demonstrate that diverse combinations of the parameters can generate stars with the same number of patches but different radial and angular stiffness. This mechanism could provide a neat way of further fine-tuning the elastic properties of the supramolecular network without changing its topology.

Research paper thumbnail of Polymer brush under flow as an anchored microswimmer

Polymer brushes are increasingly used to tailor surface physicochemistry for various applications... more Polymer brushes are increasingly used to tailor surface physicochemistry for various applications such as wetting, adhesion of biological objects, implantable devices, etc. We perform Dissipative Particle Dynamics simulations to study the behavior of dense polymer brushes under flow in a slit-pore channel. We discover that the system displays flow inversion at the brush interface for several disconnected ranges of the imposed flow. We associate such phenomenon to collective polymer dynamics: a wave propagating on the brush surface. The relation between the wavelength, the amplitude and the propagation speed of the flow-generated wave is consistent with the solution of the Stokes equations when an imposed traveling wave is assumed as boundary condition (the famous Taylor's swimmer).

Research paper thumbnail of Structural properties of the dipolar hard-sphere fluid at low temperatures and densities

Soft Matter, 2012

Through extensive state-of-the-art numerical simulations, we study the behavior of the dipolar ha... more Through extensive state-of-the-art numerical simulations, we study the behavior of the dipolar hard sphere model at low temperatures and low densities, shedding light on a region of the phase diagram where a topological phase transition has long been thought to occur. We show that the system exhibits remarkable and unusual behaviors, like a very low density percolation locus and a stabilization of rings over chain structures. This unexpected abundance of rings comes from a delicate balance between the lower ring energy and the end-to-end chain entropy, and hints at a possible mechanism for the suppression of the gas-liquid phase separation. Our results open the possibility for refined theoretical approaches which, in addition to the previously encompassed chain and branched geometries, must also include the significant contribution arising from ring formation.

Research paper thumbnail of Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link

Soft Matter, 2012

Short blunt-ended DNA duplexes comprising 6 to 20 base pairs self-assemble into polydisperse semi... more Short blunt-ended DNA duplexes comprising 6 to 20 base pairs self-assemble into polydisperse semi-flexible chains due to hydrophobic stacking interactions between terminal base pairs. Above a critical concentration, which depends on temperature and duplex length, such chains order into liquid crystal phases. Here, we investigate the self-assembly of such double-helical duplexes with a combined numerical and theoretical approach. We simulate the bulk system employing the coarsegrained DNA model recently proposed by Ouldridge et al. [ J. Chem. Phys. 134, 08501 (2011) ].

Research paper thumbnail of On the gas–liquid phase separation and the self-assembly of charged soft dumbbells

Molecular Physics, 2013

ABSTRACT We investigate the phase behaviour of charged soft dumbbells, particles composed of two ... more ABSTRACT We investigate the phase behaviour of charged soft dumbbells, particles composed of two soft but oppositely charged sites, as a function of the separation between the sites. Through successive umbrella sampling Monte Carlo simulations, we evaluate the equilibrium particle density of states. For elongated dumbbells, we recover the expected critical behaviour. However, reducing the elongation we are unable to locate the gas–liquid critical point in the accessible region of temperature and density. Correspondingly, the self-assembly of the particles in ring structures becomes dominant with respect to the formation of chain-like structures. Our results enrich the debate on the competition between self-assembly and phase separation and contribute to the long-standing dilemma about the putative gas–liquid criticality in dipolar fluids.

Research paper thumbnail of Accurate phase diagram of tetravalent DNA nanostars

The Journal of Chemical Physics, 2014

We evaluate, by means of molecular dynamics simulations employing a realistic DNA coarsegrained m... more We evaluate, by means of molecular dynamics simulations employing a realistic DNA coarsegrained model, the phase behaviour and the structural and dynamic properties of tetravalent DNA nanostars, i.e. nanoconstructs completely made of DNA. We find that, as the system is cooled down, tetramers undergo a gas-liquid phase separation in a region of concentrations which, if the difference in salt concentration is taken into account, is comparable with the recently measured experimental phase diagram [S. Biffi et al, Proc. Natl. Acad. Sci, 110, 15633 (2013)]. We also present a meanfield free energy for modelling the phase diagram based on the bonding contribution derived by Wertheim in his studies of associating liquids. Combined with mass-action law expressions appropriate for DNA binding and a numerically evaluated reference free energy, the resulting free energy qualitatively reproduces the numerical data. Finally, we report information on the nanostar structure, e.g. geometry and flexibility of the single tetramer and of the collective behaviour, providing a useful reference for future small angle scattering experiments, for all investigated temperatures and concentrations.

Research paper thumbnail of Self and collective correlation functions in a gel of tetrahedral patchy particles

Research paper thumbnail of Gels of DNA Nanostars Never Crystallize

ACS Nano, 2014

made of tetravalent DNA nanostars are thermodinamically stable in a wide range of concentrations ... more made of tetravalent DNA nanostars are thermodinamically stable in a wide range of concentrations and for all experimentally accessible temperature. This provides the first soft matter example of a fully-bonded liquid more stable than a crystal.

Research paper thumbnail of Nonmonotonic Magnetic Susceptibility of Dipolar Hard-Spheres at Low Temperature and Density

Physical Review Letters, 2013

We investigate, via numerical simulations, mean field, and density functional theories, the magne... more We investigate, via numerical simulations, mean field, and density functional theories, the magnetic response of a dipolar hard sphere fluid at low temperatures and densities, in the region of strong association. The proposed parameter-free theory is able to capture both the density and temperature dependence of the ring-chain equilibrium and the contribution to the susceptibility of a chain of generic length. The theory predicts a nonmonotonic temperature dependence of the initial (zero field) magnetic susceptibility, arising from the competition between magnetically inert particle rings and magnetically active chains. Monte Carlo simulation results closely agree with the theoretical findings.

Research paper thumbnail of Computing the phase diagram of binary mixtures: A patchy particle case study

The Journal of Chemical Physics, 2013

We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy pa... more We investigate the phase behaviour of 2D mixtures of bi-functional and three-functional patchy particles and 3D mixtures of bi-functional and tetra-functional patchy particles by means of Monte Carlo simulations and Wertheim theory. We start by computing the critical points of the pure systems and then we investigate how the critical parameters change upon lowering the temperature. We extend the Successive Umbrella Sampling method to mixtures to make it possible to extract information about the phase behaviour of the system at a fixed temperature for the whole range of densities and compositions of interest.

Research paper thumbnail of Low temperature structural transitions in dipolar hard spheres: The influence on magnetic properties

Journal of Magnetism and Magnetic Materials, 2015

We investigate the structural chain-to-ring transition at low temperature in a gas of dipolar har... more We investigate the structural chain-to-ring transition at low temperature in a gas of dipolar hard spheres (DHS). Due to the weakening of entropic contribution, ring formation becomes noticeable when the effective dipole-dipole magnetic interaction increases. It results in the redistribution of particles from usually observed flexible chains into flexible rings. The concentration (ρ) of DHS plays a crucial part in this transition: at a very low ρ only chains and rings are observed, whereas even a slight increase of the volume fraction leads to the formation of branched or defect structures. As a result, the fraction of DHS aggregated in defect-free rings turns out to be a non-monotonic function of ρ. The average ring size is found to be a slower increasing function of ρ when compared to that of chains. Both theory and computer simulations confirm the dramatic influence of the ring formation on the ρ-dependence of the initial magnetic susceptibility (χ) when the temperature decreases. The rings due to their zero total dipole moment are irresponsive to a weak magnetic field and drive to the strong decrease of the initial magnetic susceptibility.

Research paper thumbnail of How soft repulsion enhances the depletion mechanism

Soft Matter, 2014

We investigate binary mixtures of large colloids interacting through soft potentials with small, ... more We investigate binary mixtures of large colloids interacting through soft potentials with small, ideal depletants. We show that softness has a dramatic effect on the resulting colloid-colloid effective potential when the depletant-to-colloid size ratio q is small, with significant consequences on the colloidal phase behaviour. We provide an exact relationship that allows us to obtain the effective pair potential for any type of colloid-depletant interaction in the case of ideal depletants, without having to rely on complicated and expensive full-mixture simulations. We also show that soft repulsion among depletants further enhances the tendency of colloids to aggregate. Our theoretical and numerical results demonstrate that--in the limit of small q--soft mixtures cannot be mapped onto hard systems and hence soft depletion is not a mere extension of the widely used Asakura-Oosawa potential.

Research paper thumbnail of When depletion goes soft

We investigate binary mixtures of large colloids interacting through soft potentials with small, ... more We investigate binary mixtures of large colloids interacting through soft potentials with small, ideal depletants. We show that softness has a dramatic effect on the resulting colloid-colloid effective potential when the depletant-to-colloid size ratio qqq is small, with significant consequences on the colloidal phase behaviour. We also provide an exact relation that allows us to obtain the effective pair potential for any type of colloid-depletant interactions in the case of ideal depletants, without having to rely on complicated and expensive full-mixture simulations. Our theoretical and numerical results demonstrate that - in the limit of small qqq - soft mixtures cannot be mapped onto hard systems and hence soft depletion is not a mere extension of the widely used Asakura-Oosawa potential.

Research paper thumbnail of Self-Assembly in Chains, Rings, and Branches: A Single Component System with Two Critical Points

Physical Review Letters, 2013

We study the interplay between phase separation and self-assembly in chains, rings and branched s... more We study the interplay between phase separation and self-assembly in chains, rings and branched structures in a model of particles with dissimilar patches. We extend Wertheim's first order perturbation theory to include the effects of ring formation and theoretically investigate the thermodynamics of the model. We find a peculiar shape for the vapor-liquid coexistence, featuring re-entrant behavior in both phases and two critical points, despite the single-component nature of the system. The emergence of the lower critical point is caused by the self-assembly of rings taking place in the vapor, generating a phase with lower energy and lower entropy than the liquid. Monte Carlo simulations of the same model fully support these unconventional theoretical predictions.

Research paper thumbnail of Temperature-induced structural transitions in self-assembling magnetic nanocolloids

Phys. Chem. Chem. Phys., 2015

With the help of a unique combination of density functional theory and computer simulations, we d... more With the help of a unique combination of density functional theory and computer simulations, we discover two possible scenarios, depending on concentration, for the hierarchical self-assembly of magnetic nanoparticles on cooling. We show that typically considered low temperature clusters, i.e. defect-free chains and rings, merge into more complex branched structures through only three types of defects: four-way X junctions, three-way Y junctions and two-way Z junctions. Our accurate calculations reveal the predominance of weakly magnetically responsive rings cross-linked by X defects at the lowest temperatures. We thus provide a strategy to fine-tune magnetic and thermodynamic responses of magnetic nanocolloids to be used in medical and microfluidics applications.

Research paper thumbnail of Supporting Information for " Bottom-Up Colloidal Crystal Assembly with a Twist "

a These authors contributed equally S1 S1. MONTE CARLO FIG. S1: Difference in chemical potential ... more a These authors contributed equally S1 S1. MONTE CARLO FIG. S1: Difference in chemical potential of an adsorbed linear homopolymer with length, M , between the cubic and hexagonal tetrastack polymorphs composed of colloids with diameter, σ c , at k B T = 1.0. S2