Liya Xu • USC Profiles (original) (raw)

  1. Aqueous Humor Liquid Biopsy Identifies Murine Double Minute 4 Segmental Gain in Retinoblastoma: Implications for Chemotherapy Response and Precision Oncology. JCO Precis Oncol. 2025 Aug; 9:e2500250. Huang E, Sirivolu S, Yellapantula V, Kale P, Kuhn P, Hicks J, Brown B, Paniagua H, Pandya D, Shah R, Berry JL, Xu L. PMID: 40834326; PMCID: PMC12379781.
    View in: PubMed Mentions: Fields:
  2. Minimum Technical Preanalytical, Patient, and Clinical Context Data Elements for Cerebrospinal Fluid Liquid Biopsy: Recommendations for Public Database Submissions. JCO Precis Oncol. 2025 Jun; 9:e2400921. Bagley SJ, Beaubier N, Balaj L, Bettegowda C, Carpenter E, Carter BS, Corner A, Dittamore R, Grossman RL, Hickman RA, Kuhn P, LeBlang S, Lichtenberg T, Mansouri A, Miller A, Ngo T, Rood BR, Till J, Xu L, Leiman LC. PMID: 40570259; PMCID: PMC12203979.
    View in: PubMed Mentions: Fields:
    Translation:Humans
  3. The use of aqueous humor cfDNA for low-pass whole genome sequencing as a clinical test to identify intraocular retinoblastoma recurrence. ScienceBank. 2025; 2025. Chigane D, Pandya D, Brown B, Lin M, Tseng A, Shah R, Jubran R, Snider M, Peng P, Singh M, Yellapantula V, Biegel JA, Xu L, Berry JL. PMID: 41716777; PMCID: PMC12914873.
    View in: PubMed Mentions:
  4. Retinoblastoma: Aqueous humor liquid biopsy. Taiwan J Ophthalmol. 2025 Jan-Mar; 15(1):55-61. Sanchez GM, Chigane D, Lin M, Xu L, Yellapantula V, Berry JL. PMID: 40213298; PMCID: PMC11981557.
    View in: PubMed Mentions: 2
  5. Safety Assessment of Aqueous Humor Liquid Biopsy in Retinoblastoma: A Multicenter Study of 1203 Procedures. Ophthalmology. 2026 Mar; 133(3):326-332. Chigane D, Pandya D, Singh M, Brown B, Lin M, Xu L, Stacey AW, Bonnell AC, Hubbard GB, Grossniklaus H, Skalet AH, Bellsmith KN, Lally SE, Simão-Rafael M, Muñoz CJ, Català-Mora J, Malaise D, Lumbroso-Le Rouic L, Matet A, Chantada GL, Cassoux N, Shields CL, Berry JL. PMID: 40118155; PMCID: PMC12519347.
    View in: PubMed Mentions: 2 Fields:
    Translation:Humans
  6. Dynamics of microRNA secreted via extracellular vesicles during the maturation of embryonic stem cell-derived retinal pigment epithelium. J Extracell Biol. 2024 Sep; 3(9):e70001. Pollalis D, Nair GKG, Leung J, Bloemhof CM, Bailey JK, Pennington BO, Kelly KR, Khan AI, Yeh AK, Sundaram KS, Clegg DO, Peng CC, Xu L, Georgescu C, Wren JD, Lee SY. PMID: 39281021; PMCID: PMC11393772.
    View in: PubMed Mentions: 5
  7. Single-cell somatic copy number alteration profiling of vitreous humor seeds in retinoblastoma. Ophthalmic Genet. 2024 12; 45(6):646-649. Sirivolu S, Schmidt MJ, Prabakar RK, Kuhn P, Hicks J, Berry JL, Xu L. PMID: 39016001; PMCID: PMC11598666.
    View in: PubMed Mentions: 1 Fields:
    Translation:Humans
  8. Aqueous VEGF-A Levels as a Liquid Biopsy Biomarker of Retinoblastoma Vitreous Seed Response to Therapy. Invest Ophthalmol Vis Sci. 2024 Jun 03; 65(6):18. Daniels AB, Sishtla KL, Bogan CM, Pierce JM, Chen SC, Xu L, Berry JL, Corson TW. PMID: 38861274; PMCID: PMC11174092.
    View in: PubMed Mentions: 3 Fields:
    Translation:HumansAnimals
  9. Liquid Biopsy Profiling with Multiple Tests in Patients with Metastatic Breast Cancer. J Mol Pathol (Basel). 2024 Jun; 5(2):199-214. Higa N, Welter L, Xu L, Kolatkar A, Bramlett KS, Gjoerup OV, Graf R, Huang RSP, Leary RJ, Lee Y, Perkins JG, Riker AI, Singh AP, Tafra L, Tweed CK, Shriver CD, Hicks J, Kuhn P. PMID: 41614092; PMCID: PMC12851560.
    View in: PubMed Mentions:
  10. Isolation and Characterization of Extracellular Vesicles Through Orthogonal Approaches for the Development of Intraocular EV Therapy. Invest Ophthalmol Vis Sci. 2024 Mar 05; 65(3):6. Leung J, Pollalis D, Nair GKG, Bailey JK, Pennington BO, Khan AI, Kelly KR, Yeh AK, Sundaram KS, Clegg DO, Peng CC, Xu L, Lee SY. PMID: 38466285; PMCID: PMC10929743.
    View in: PubMed Mentions: 4 Fields:
    Translation:HumansCells
  11. Correlating somatic copy number alteration in aqueous humour cfDNA with chemotherapy history, eye salvage and pathological features in retinoblastoma. Br J Ophthalmol. 2024 02 21; 108(3):449-456. Luo Y, Xu M, Yang L, Yao Y, Berry JL, Xu L, Wen X, He X, Han M, Fan X, Fan J, Jia R. PMID: 36931696; PMCID: PMC10505245.
    View in: PubMed Mentions: 8 Fields:
    Translation:Humans
  12. Aqueous Humor Liquid Biopsy as a Companion Diagnostic for Retinoblastoma: Implications for Diagnosis, Prognosis, and Therapeutic Options: Five Years of Progress. Am J Ophthalmol. 2024 07; 263:188-205. Berry JL, Pike S, Shah R, Reid MW, Peng CC, Wang Y, Yellapantula V, Biegel J, Kuhn P, Hicks J, Xu L. PMID: 38040321; PMCID: PMC11148850.
    View in: PubMed Mentions: 18 Fields:
    Translation:Humans
  13. Multicentre analysis of nucleic acid quantification using aqueous humour liquid biopsy in uveal melanoma: implications for clinical testing. Can J Ophthalmol. 2025 02; 60(1):e23-e31. Pike SB, Reid MW, Peng CC, Chang C, Xu BY, Gombos DS, Patel S, Xu L, Berry JL. PMID: 38036045; PMCID: PMC11128479.
    View in: PubMed Mentions: 6 Fields:
    Translation:Humans
  14. Simultaneous Copy Number Alteration and Single-Nucleotide Variation Analysis in Matched Aqueous Humor and Tumor Samples in Children with Retinoblastoma. Int J Mol Sci. 2023 May 11; 24(10). Schmidt MJ, Prabakar RK, Pike S, Yellapantula V, Peng CC, Kuhn P, Hicks J, Xu L, Berry JL. PMID: 37239954; PMCID: PMC10218537.
    View in: PubMed Mentions: 15 Fields:
    Translation:Humans
  15. Diagnostic Aqueous Humor Proteome Predicts Metastatic Potential in Uveal Melanoma. Int J Mol Sci. 2023 Apr 06; 24(7). Peng CC, Sirivolu S, Pike S, Kim ME, Reiser B, Li HT, Liang G, Xu L, Berry JL. PMID: 37047796; PMCID: PMC10094875.
    View in: PubMed Mentions: 14 Fields:
    Translation:Humans
  16. Contrived Materials and a Data Set for the Evaluation of Liquid Biopsy Tests: A Blood Profiling Atlas in Cancer (BLOODPAC) Community Study. J Mol Diagn. 2023 03; 25(3):143-155. Hernandez KM, Bramlett KS, Agius P, Baden J, Cao R, Clement O, Corner AS, Craft J, Dean DA, Dry JR, Grigaityte K, Grossman RL, Hicks J, Higa N, Holzer TR, Jensen J, Johann DJ, Katz S, Kolatkar A, Keynton JL, Lee JSH, Maar D, Martini JF, Meyer CG, Roberts PC, Ryder M, Salvatore L, Schageman JJ, Somiari S, Stetson D, Stern M, Xu L, Leiman LC. PMID: 36828596.
    View in: PubMed Mentions: 4 Fields:
    Translation:Humans
  17. Combined low-pass whole genome and targeted sequencing in liquid biopsies for pediatric solid tumors. NPJ Precis Oncol. 2023 Feb 20; 7(1):21. Christodoulou E, Yellapantula V, O'Halloran K, Xu L, Berry JL, Cotter JA, Zdanowicz A, Mascarenhas L, Amatruda JF, Ostrow D, Bootwalla M, Gai X, Navid F, Biegel JA. PMID: 36805676; PMCID: PMC9941464.
    View in: PubMed Mentions: 35
  18. A Multicenter Analysis of Nucleic Acid Quantification Using Aqueous Humor Liquid Biopsy in Retinoblastoma: Implications for Clinical Testing. Ophthalmol Sci. 2023 Sep; 3(3):100289. Im DH, Pike S, Reid MW, Peng CC, Sirivolu S, Grossniklaus HE, Hubbard GB, Skalet AH, Bellsmith KN, Shields CL, Lally SE, Stacey AW, Reiser BJ, Nagiel A, Shah R, Xu L, Berry JL. PMID: 37025945; PMCID: PMC10070901.
    View in: PubMed Mentions: 13
  19. Non-synonymous, synonymous, and non-coding nucleotide variants contribute to recurrently altered biological processes during retinoblastoma progression. Genes Chromosomes Cancer. 2023 05; 62(5):275-289. Stachelek K, Harutyunyan N, Lee S, Beck A, Kim J, Xu L, Berry JL, Nagiel A, Reynolds CP, Murphree AL, Lee TC, Aparicio JG, Cobrinik D. PMID: 36550020; PMCID: PMC10006380.
    View in: PubMed Mentions: 5 Fields:
    Translation:Humans
  20. Chromosome 6p amplification detected in blood cell-free DNA in advanced intraocular retinoblastoma. Ophthalmic Genet. 2022 12; 43(6):866-870. Sirivolu S, Xu L, Warren M, Prabakar RK, Shah R, Kuhn P, Hicks J, Berry JL. PMID: 36342106; PMCID: PMC9877166.
    View in: PubMed Mentions: 4 Fields:
    Translation:HumansCells
  21. Malignant teratoid intraocular ciliary body medulloepithelioma in a 5-year-old male with corresponding somatic copy number alteration profile of aqueous humor cell-free DNA. Ophthalmic Genet. 2022 12; 43(6):855-861. Pike S, Iyengar R, Peng CC, Chevez-Barrios P, Brown B, Shah R, Biegel J, Yellapantula V, Nagiel A, Reiser BJ, Xu L, Berry JL. PMID: 36314385; PMCID: PMC9877122.
    View in: PubMed Mentions: 2 Fields:
    Translation:Humans
  22. Characterizing DNA methylation signatures of retinoblastoma using aqueous humor liquid biopsy. Nat Commun. 2022 09 21; 13(1):5523. Li HT, Xu L, Weisenberger DJ, Li M, Zhou W, Peng CC, Stachelek K, Cobrinik D, Liang G, Berry JL. PMID: 36130950; PMCID: PMC9492718.
    View in: PubMed Mentions: 40 Fields:
    Translation:HumansCells
  23. Identification of epithelial and mesenchymal circulating tumor cells in clonal lineage of an aggressive prostate cancer case. NPJ Precis Oncol. 2022 Jun 21; 6(1):41. Chai S, Ruiz-Velasco C, Naghdloo A, Pore M, Singh M, Matsumoto N, Kolatkar A, Xu L, Shishido S, Aparicio A, Zurita AJ, Hicks J, Kuhn P. PMID: 35729213; PMCID: PMC9213535.
    View in: PubMed Mentions: 18
  24. Disease characterization in liquid biopsy from HER2-mutated, non-amplified metastatic breast cancer patients treated with neratinib. NPJ Breast Cancer. 2022 Feb 18; 8(1):22. Shishido SN, Masson R, Xu L, Welter L, Prabakar RK, D' Souza A, Spicer D, Kang I, Jayachandran P, Hicks J, Lu J, Kuhn P. PMID: 35181666; PMCID: PMC8857263.
    View in: PubMed Mentions: 12
  25. Aqueous Humor as a Liquid Biopsy for Retinoblastoma: Clear Corneal Paracentesis and Genomic Analysis. J Vis Exp. 2021 09 07; (175). Kim ME, Xu L, Prabakar RK, Shen L, Peng CC, Kuhn P, Gai X, Hicks J, Berry JL. PMID: 34570090; PMCID: PMC9200366.
    View in: PubMed Mentions: 22 Fields:
    Translation:Humans
  26. Treatment response and tumor evolution: lessons from an extended series of multianalyte liquid biopsies in a metastatic breast cancer patient. Cold Spring Harb Mol Case Stud. 2020 12; 6(6). Welter L, Xu L, McKinley D, Dago AE, Prabakar RK, Restrepo-Vassalli S, Xu K, Rodriguez-Lee M, Kolatkar A, Nevarez R, Ruiz C, Nieva J, Kuhn P, Hicks J. PMID: 33203646; PMCID: PMC7784493.
    View in: PubMed Mentions: 26 Fields:
    Translation:Cells
  27. Author Correction: SMURF-seq: efficient copy number profiling on long-read sequencers. Genome Biol. 2020 Aug 25; 21(1):214. Prabakar RK, Xu L, Hicks J, Smith AD. PMID: 32843071; PMCID: PMC7447571.
    View in: PubMed Mentions: Fields:
  28. Preanalytical Variables for the Genomic Assessment of the Cellular and Acellular Fractions of the Liquid Biopsy in a Cohort of Breast Cancer Patients. J Mol Diagn. 2020 03; 22(3):319-337. Shishido SN, Welter L, Rodriguez-Lee M, Kolatkar A, Xu L, Ruiz C, Gerdtsson AS, Restrepo-Vassalli S, Carlsson A, Larsen J, Greenspan EJ, Hwang ES, Waitman KR, Nieva J, Bethel K, Hicks J, Kuhn P. PMID: 31978562; PMCID: PMC7103765.
    View in: PubMed Mentions: 21 Fields:
    Translation:HumansCells
  29. Aqueous Humor Is Superior to Blood as a Liquid Biopsy for Retinoblastoma. Ophthalmology. 2020 04; 127(4):552-554. Berry JL, Xu L, Polski A, Jubran R, Kuhn P, Kim JW, Hicks J. PMID: 31767439; PMCID: PMC7093221.
    View in: PubMed Mentions: 33 Fields:
    Translation:Humans
  30. SMURF-seq: efficient copy number profiling on long-read sequencers. Genome Biol. 2019 07 08; 20(1):134. Prabakar RK, Xu L, Hicks J, Smith AD. PMID: 31287019; PMCID: PMC6615205.
    View in: PubMed Mentions: 8 Fields:
    Translation:HumansCells
  31. Genomic cfDNA Analysis of Aqueous Humor in Retinoblastoma Predicts Eye Salvage: The Surrogate Tumor Biopsy for Retinoblastoma. Mol Cancer Res. 2018 11; 16(11):1701-1712. Berry JL, Xu L, Kooi I, Murphree AL, Prabakar RK, Reid M, Stachelek K, Le BHA, Welter L, Reiser BJ, Chévez-Barrios P, Jubran R, Lee TC, Kim JW, Kuhn P, Cobrinik D, Hicks J. PMID: 30061186; PMCID: PMC6214755.
    View in: PubMed Mentions: 69 Fields:
    Translation:Humans
  32. Functional role of the intracellular loop linking transmembrane domains 6 and 7 of the human dipeptide transporter hPEPT1. J Membr Biol. 2010 Dec; 238(1-3):43-9. Xu L, Li Y, Haworth IS, Davies DL. PMID: 21104182; PMCID: PMC3032433.
    View in: PubMed Mentions: 3 Fields:
    Translation:HumansCells
  33. Mutagenesis and cysteine scanning of transmembrane domain 10 of the human dipeptide transporter. Pharm Res. 2009 Oct; 26(10):2358-66. Xu L, Haworth IS, Kulkarni AA, Bolger MB, Davies DL. PMID: 19685173; PMCID: PMC2861424.
    View in: PubMed Mentions: 13 Fields:
    Translation:HumansCells
  34. Ethanol inhibits functional activity of the human intestinal dipeptide transporter hPepT1 expressed in Xenopus oocytes. Alcohol Clin Exp Res. 2008 May; 32(5):777-84. Li K, Xu L, Kulkarni AA, Perkins DI, Haworth IS, Davies DL. PMID: 18336632; PMCID: PMC2861421.
    View in: PubMed Mentions: 1 Fields:
    Translation:HumansAnimalsCells

Start with: newest oldestInclude: line numbers double spacing all authors publication IDs