Alice Popejoy • UC Davis Profiles (original) (raw)
- Determinants of DNA-sequence-based Diagnostic Yield in the CSER Consortium. medRxiv. 2026 Apr 22. Mavura Y, Crosslin D, Ferar K, Lawlor JM, Greally JM, Hindorff L, Jarvik GP, Kalla S, Koenig BA, Kvale M, Kwok PY, Norton M, Plon SE, Powell BC, Slavotinek A, Thompson ML, Popejoy AB, Kenny EE, Risch N. PMID: 42078353; PMCID: PMC13131712.
View in: PubMed Mentions: - Clinical validation of a statin-benefit polygenic score using real-world cohorts of primary prevention participants. medRxiv. 2025 Oct 31. Haldar T, Lee KM, Teerlink CC, Iyer KR, Voorhees AL, Najera JA, Toda N, Lu M, Douglas MP, Popejoy AB, Bress A, Tcheandjieu C, Tsao PS, Chang KM, Krauss RM, Risch N, Iribarren C, Lynch JA, Oni-Orisan A. PMID: 41282843; PMCID: PMC12633136.
View in: PubMed Mentions: - Conceptualizing the public good for genomics in the global South: a cross-disciplinary roundtable dialogue. Front Genet. 2025; 16:1523396. Jiwani T, Akinwumi A, Cheé-Santiago J, Egorova Y, Frassetto G, di Lazzaro Filho R, Lopes-Cendes I, Okumura M, Alonso Pavón JA, Popejoy AB, Skinner D, Wade P, Wienroth M, Schwartz-Marin E, Naslavsky MS. PMID: 40672394; PMCID: PMC12264638.
View in: PubMed Mentions: 1 - Experience using conventional compared to ancestry-based population descriptors in clinical genomics laboratories. Am J Hum Genet. 2025 Mar 06; 112(3):481-491. Hatchell KE, Poll SR, Russell EM, Williams TJ, Ellsworth RE, Facio FM, Aguilar S, Esplin ED, Popejoy AB, Nussbaum RL, Aradhya S. PMID: 39884281; PMCID: PMC11947177.
View in: PubMed Mentions: 4 Fields:
Translation:Humans - Design and implementation of an action plan for justice, equity, diversity, and inclusion within the Clinical Genome Resource. Am J Hum Genet. 2025 Feb 06; 112(2):215-223. Popejoy AB, Ritter DI, Azzariti D, Berg JS, Bulkley JE, Cho M, Gonzaga-Jauregui C, Klein TE, Martschenko DO, Oni-Orisan A, Ramos EM, Rehm HL, Riggs ER, Wright MW, Yudell M, Plon SE, Morales J. PMID: 39793579; PMCID: PMC11866942.
View in: PubMed Mentions: 2 Fields:
Translation:Humans - Bridging genomics' greatest challenge: The diversity gap. Cell Genom. 2025 Jan 08; 5(1):100724. Corpas M, Pius M, Poburennaya M, Guio H, Dwek M, Nagaraj S, Lopez-Correa C, Popejoy A, Fatumo S. PMID: 39694036; PMCID: PMC11770215.
View in: PubMed Mentions: 22 Fields:
Translation:Humans - Reconciling diversity in health and genomic data collection with the regulation of AI in clinical genomics. Genet Med. 2024 Jul; 26(7):101127. McKibbin KJ, Popejoy AB, Shabani M. PMID: 38555522.
View in: PubMed Mentions: Fields:
Translation:Humans - A draft human pangenome reference. Nature. 2023 05; 617(7960):312-324. Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, Eizenga JM, Feng X, Fischer C, Fulton RS, Garg S, Groza C, Guarracino A, Harvey WT, Heumos S, Howe K, Jain M, Lu TY, Markello C, Martin FJ, Mitchell MW, Munson KM, Mwaniki MN, Novak AM, Olsen HE, Pesout T, Porubsky D, Prins P, Sibbesen JA, Sirén J, Tomlinson C, Villani F, Vollger MR, Antonacci-Fulton LL, Baid G, Baker CA, Belyaeva A, Billis K, Carroll A, Chang PC, Cody S, Cook DE, Cook-Deegan RM, Cornejo OE, Diekhans M, Ebert P, Fairley S, Fedrigo O, Felsenfeld AL, Formenti G, Frankish A, Gao Y, Garrison NA, Giron CG, Green RE, Haggerty L, Hoekzema K, Hourlier T, Ji HP, Kenny EE, Koenig BA, Kolesnikov A, Korbel JO, Kordosky J, Koren S, Lee H, Lewis AP, Magalhães H, Marco-Sola S, Marijon P, McCartney A, McDaniel J, Mountcastle J, Nattestad M, Nurk S, Olson ND, Popejoy AB, Puiu D, Rautiainen M, Regier AA, Rhie A, Sacco S, Sanders AD, Schneider VA, Schultz BI, Shafin K, Smith MW, Sofia HJ, Abou Tayoun AN, Thibaud-Nissen F, Tricomi FF, Wagner J, Walenz B, Wood JMD, Zimin AV, Bourque G, Chaisson MJP, Flicek P, Phillippy AM, Zook JM, Eichler EE, Haussler D, Wang T, Jarvis ED, Miga KH, Garrison E, Marschall T, Hall IM, Li H, Paten B. PMID: 37165242; PMCID: PMC10172123.
View in: PubMed Mentions: 487 Fields:
Translation:Humans - The Human Pangenome Project: a global resource to map genomic diversity. Nature. 2022 04; 604(7906):437-446. Wang T, Antonacci-Fulton L, Howe K, Lawson HA, Lucas JK, Phillippy AM, Popejoy AB, Asri M, Carson C, Chaisson MJP, Chang X, Cook-Deegan R, Felsenfeld AL, Fulton RS, Garrison EP, Garrison NA, Graves-Lindsay TA, Ji H, Kenny EE, Koenig BA, Li D, Marschall T, McMichael JF, Novak AM, Purushotham D, Schneider VA, Schultz BI, Smith MW, Sofia HJ, Weissman T, Flicek P, Li H, Miga KH, Paten B, Jarvis ED, Hall IM, Eichler EE, Haussler D, Human Pangenome Reference Consortium. PMID: 35444317; PMCID: PMC9402379.
View in: PubMed Mentions: 239 Fields:
Translation:Humans - ClinGen Variant Curation Interface: a variant classification platform for the application of evidence criteria from ACMG/AMP guidelines. Genome Med. 2022 01 18; 14(1):6. Preston CG, Wright MW, Madhavrao R, Harrison SM, Goldstein JL, Luo X, Wand H, Wulf B, Cheung G, Mandell ME, Tong H, Cheng S, Iacocca MA, Pineda AL, Popejoy AB, Dalton K, Zhen J, Dwight SS, Babb L, DiStefano M, O'Daniel JM, Lee K, Riggs ER, Zastrow DB, Mester JL, Ritter DI, Patel RY, Subramanian SL, Milosavljevic A, Berg JS, Rehm HL, Plon SE, Cherry JM, Bustamante CD, Costa HA, Clinical Genome Resource (ClinGen). PMID: 35039090; PMCID: PMC8764818.
View in: PubMed Mentions: 40 Fields:
Translation:Humans - Ancestral diversity is limited in published T cell receptor sequencing studies. Immunity. 2021 10 12; 54(10):2177-2179. Huang YN, Peng K, Popejoy AB, Hu J, Nowicki TS, Gold SM, Quintana-Murci L, Fuentes-Guajardo M, Shugay M, Greiff V, Burkhardt AM, Alachkar H, Mangul S. PMID: 34644550; PMCID: PMC12023909.
View in: PubMed Mentions: 5 Fields:
Translation:Humans - Office of Management and Budget Racial/Ethnic Categories in Mortality Research: A Framework for Including the Voices of Racialized Communities. Am J Public Health. 2021 07; 111(S2):S133-S140. Hayes-Bautista DE, Bryant M, Yudell M, Hayes-Bautista TM, Partlow K, Popejoy AB, Burchard E, Hsu P. PMID: 34314200; PMCID: PMC8495649.
View in: PubMed Mentions: 8 Fields:
Translation:Humans - Diversity in immunogenomics: the value and the challenge. Nat Methods. 2021 06; 18(6):588-591. Peng K, Safonova Y, Shugay M, Popejoy AB, Rodriguez OL, Breden F, Brodin P, Burkhardt AM, Bustamante C, Cao-Lormeau VM, Corcoran MM, Duffy D, Fuentes-Guajardo M, Fujita R, Greiff V, Jönsson VD, Liu X, Quintana-Murci L, Rossetti M, Xie J, Yaari G, Zhang W, Abedalthagafi MS, Adekoya KO, Ahmed RA, Chang WC, Gray C, Nakamura Y, Lees WD, Khatri P, Alachkar H, Scheepers C, Watson CT, Karlsson Hedestam GB, Mangul S. PMID: 34002093; PMCID: PMC8842483.
View in: PubMed Mentions: 36 Fields:
Translation:HumansCells - Truth and Reconciliation of Racial and Ethnic Health Disparities: A Case Study of COVID-19. Am J Bioeth. 2021 03; 21(3):79-83. Popejoy AB. PMID: 33616495.
View in: PubMed Mentions: 1 Fields:
Translation:HumansCellsPHPublic Health - Clinical Genetics Lacks Standard Definitions and Protocols for the Collection and Use of Diversity Measures. Am J Hum Genet. 2020 07 02; 107(1):72-82. Popejoy AB, Crooks KR, Fullerton SM, Hindorff LA, Hooker GW, Koenig BA, Pino N, Ramos EM, Ritter DI, Wand H, Wright MW, Yudell M, Zou JY, Plon SE, Bustamante CD, Ormond KE, Clinical Genome Resource (ClinGen) Ancestry and Diversity Working Group. PMID: 32504544; PMCID: PMC7332657.
View in: PubMed Mentions: 39 Fields:
Translation:Humans - Diversity In Precision Medicine And Pharmacogenetics: Methodological And Conceptual Considerations For Broadening Participation. Pharmgenomics Pers Med. 2019; 12:257-271. Popejoy AB. PMID: 31686892; PMCID: PMC6800456.
View in: PubMed Mentions: 36 - Genome-wide Association Studies in Ancestrally Diverse Populations: Opportunities, Methods, Pitfalls, and Recommendations. Cell. 2019 10 17; 179(3):589-603. Peterson RE, Kuchenbaecker K, Walters RK, Chen CY, Popejoy AB, Periyasamy S, Lam M, Iyegbe C, Strawbridge RJ, Brick L, Carey CE, Martin AR, Meyers JL, Su J, Chen J, Edwards AC, Kalungi A, Koen N, Majara L, Schwarz E, Smoller JW, Stahl EA, Sullivan PF, Vassos E, Mowry B, Prieto ML, Cuellar-Barboza A, Bigdeli TB, Edenberg HJ, Huang H, Duncan LE. PMID: 31607513; PMCID: PMC6939869.
View in: PubMed Mentions: 408 Fields:
Translation:Humans - Standardized Biogeographic Grouping System for Annotating Populations in Pharmacogenetic Research. Clin Pharmacol Ther. 2019 05; 105(5):1256-1262. Huddart R, Fohner AE, Whirl-Carrillo M, Wojcik GL, Gignoux CR, Popejoy AB, Bustamante CD, Altman RB, Klein TE. PMID: 30506572; PMCID: PMC6465129.
View in: PubMed Mentions: 65 Fields:
Translation:Humans - The clinical imperative for inclusivity: Race, ethnicity, and ancestry (REA) in genomics. Hum Mutat. 2018 11; 39(11):1713-1720. Popejoy AB, Ritter DI, Crooks K, Currey E, Fullerton SM, Hindorff LA, Koenig B, Ramos EM, Sorokin EP, Wand H, Wright MW, Zou J, Gignoux CR, Bonham VL, Plon SE, Bustamante CD, Clinical Genome Resource (ClinGen) Ancestry and Diversity Working Group (ADWG). PMID: 30311373; PMCID: PMC6188707.
View in: PubMed Mentions: 85 Fields:
Translation:Humans - Vitamin D levels, brain volume, and genetic architecture in patients with psychosis. PLoS One. 2018; 13(8):e0200250. Berg AO, Jørgensen KN, Nerhus M, Athanasiu L, Popejoy AB, Bettella F, Norbom LCB, Gurholt TP, Dahl SR, Andreassen OA, Djurovic S, Agartz I, Melle I. PMID: 30142216; PMCID: PMC6108467.
View in: PubMed Mentions: 7 Fields:
Translation:Humans - Estimating relationships between phenotypes and subjects drawn from admixed families. BMC Proc. 2016; 10(Suppl 7):357-362. Blue EM, Brown LA, Conomos MP, Kirk JL, Nato AQ, Popejoy AB, Raffa J, Ranola J, Wijsman EM, Thornton T. PMID: 27980662; PMCID: PMC5133521.
View in: PubMed Mentions: 3 - Genomics is failing on diversity. Nature. 2016 10 13; 538(7624):161-164. Popejoy AB, Fullerton SM. PMID: 27734877; PMCID: PMC5089703.
View in: PubMed Mentions: 967 Fields:
Translation:Humans
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