Soichiro Yamada • UC Davis Profiles (original) (raw)

  1. Tandem LIM domain-containing proteins, LIMK1 and LMO1, directly bind to force-bearing keratin intermediate filaments. Cell Rep. 2024 07 23; 43(7):114480. Kim DS, Cheah JS, Lai TW, Zhao KX, Foust SR, Julie Lee YR, Lo SH, Heinrich V, Yamada S. PMID: 39003737; PMCID: PMC11610427.
    View in: PubMed Mentions: 3 Fields:
    Translation:HumansAnimalsCells
  2. Phase transition of tensin-1 during the focal adhesion disassembly and cell division. Proc Natl Acad Sci U S A. 2023 04 11; 120(15):e2303037120. Lee YJ, Yamada S, Lo SH. PMID: 37011205; PMCID: PMC10104483.
    View in: PubMed Mentions: 9 Fields:
    Translation:Cells
  3. Polo-Like Kinase 2 Plays an Essential Role in Cytoprotection against MG132-Induced Proteasome Inhibition via Phosphorylation of Serine 19 in HSPB5. Int J Mol Sci. 2022 Sep 24; 23(19). Ueda S, Nishihara M, Hioka Y, Yoshino KI, Yamada S, Yamanoue M, Shirai Y. PMID: 36232565; PMCID: PMC9569985.
    View in: PubMed Mentions: 1 Fields:
    Translation:Cells
  4. Inside-out regulation of E-cadherin conformation and adhesion. Proc Natl Acad Sci U S A. 2021 07 27; 118(30). Koirala R, Priest AV, Yen CF, Cheah JS, Pannekoek WJ, Gloerich M, Yamada S, Sivasankar S. PMID: 34301871; PMCID: PMC8325368.
    View in: PubMed Mentions: 22 Fields:
    Translation:AnimalsCells
  5. Condensation of pericentrin proteins in human cells illuminates phase separation in centrosome assembly. J Cell Sci. 2021 07 15; 134(14). Jiang X, Ho DBT, Mahe K, Mia J, Sepulveda G, Antkowiak M, Jiang L, Yamada S, Jao LE. PMID: 34308971; PMCID: PMC8349556.
    View in: PubMed Mentions: 30 Fields:
    Translation:HumansCells
  6. An asymmetric junctional mechanoresponse coordinates mitotic rounding with epithelial integrity. J Cell Biol. 2021 05 03; 220(5). Monster JL, Donker L, Vliem MJ, Win Z, Matthews HK, Cheah JS, Yamada S, de Rooij J, Baum B, Gloerich M. PMID: 33688935; PMCID: PMC7953256.
    View in: PubMed Mentions: 21 Fields:
    Translation:AnimalsCells
  7. Spatial proximity of proteins surrounding zyxin under force-bearing conditions. Mol Biol Cell. 2021 06 15; 32(13):1221-1228. Cheah JS, Jacobs KA, Lai TW, Caballelo R, Yee JL, Ueda S, Heinrich V, Yamada S. PMID: 33909446; PMCID: PMC8351546.
    View in: PubMed Mentions: 10 Fields:
    Translation:AnimalsCells
  8. Aquaporin water channels as regulators of cell-cell adhesion proteins. Am J Physiol Cell Physiol. 2021 05 01; 320(5):C771-C777. Edamana S, Login FH, Yamada S, Kwon TH, Nejsum LN. PMID: 33625928.
    View in: PubMed Mentions: 18 Fields:
    Translation:HumansAnimalsCells
  9. Mapping transmembrane binding partners for E-cadherin ectodomains. Proc Natl Acad Sci U S A. 2020 12 08; 117(49):31157-31165. Shafraz O, Xie B, Yamada S, Sivasankar S. PMID: 33229577; PMCID: PMC7733791.
    View in: PubMed Mentions: 26 Fields:
    Translation:HumansCells
  10. Aquaporin-5 regulation of cell-cell adhesion proteins: an elusive "tail" story. Am J Physiol Cell Physiol. 2021 03 01; 320(3):C282-C292. Login FH, Palmfeldt J, Cheah JS, Yamada S, Nejsum LN. PMID: 33175575.
    View in: PubMed Mentions: 15 Fields:
    Translation:HumansAnimalsCells
  11. Hyperactivity of Mek in TNS1 knockouts leads to potential treatments for cystic kidney diseases. Cell Death Dis. 2019 11 18; 10(12):871. Wu ZY, Chiu CL, Lo E, Lee YJ, Yamada S, Lo SH. PMID: 31740667; PMCID: PMC6861224.
    View in: PubMed Mentions: 8 Fields:
    Translation:AnimalsCells
  12. Force-induced recruitment of cten along keratin network in epithelial cells. Proc Natl Acad Sci U S A. 2019 10 01; 116(40):19799-19801. Cheah JS, Jacobs KA, Heinrich V, Lo SH, Yamada S. PMID: 31527270; PMCID: PMC6778260.
    View in: PubMed Mentions: 10 Fields:
    Translation:HumansAnimalsCells
  13. A simple elution strategy for biotinylated proteins bound to streptavidin conjugated beads using excess biotin and heat. Biochem Biophys Res Commun. 2017 12 02; 493(4):1522-1527. Cheah JS, Yamada S. PMID: 28986262; PMCID: PMC5693302.
    View in: PubMed Mentions: 28 Fields:
    Translation:AnimalsCells
  14. Kinesin superfamily protein Kif26b links Wnt5a-Ror signaling to the control of cell and tissue behaviors in vertebrates. Elife. 2017 09 08; 6. Susman MW, Karuna EP, Kunz RC, Gujral TS, Cantú AV, Choi SS, Jong BY, Okada K, Scales MK, Hum J, Hu LS, Kirschner MW, Nishinakamura R, Yamada S, Laird DJ, Jao LE, Gygi SP, Greenberg ME, Ho HH. PMID: 28885975; PMCID: PMC5590807.
    View in: PubMed Mentions: 26 Fields:
    Translation:HumansAnimalsCells
  15. Biochemical analysis of force-sensitive responses using a large-scale cell stretch device. Cell Adh Migr. 2017 Sep 03; 11(5-6):504-513. Renner DJ, Ewald ML, Kim T, Yamada S. PMID: 28129019; PMCID: PMC5810787.
    View in: PubMed Mentions: 1 Fields:
    Translation:AnimalsCells
  16. Deletion of the cytoplasmic domain of N-cadherin reduces, but does not eliminate, traction force-transmission. Biochem Biophys Res Commun. 2016 09 30; 478(4):1640-6. Lee E, Ewald ML, Sedarous M, Kim T, Weyers BW, Truong RH, Yamada S. PMID: 27596967; PMCID: PMC5030185.
    View in: PubMed Mentions: 6 Fields:
    Translation:AnimalsCells
  17. Initiation of Chondrocyte Self-Assembly Requires an Intact Cytoskeletal Network. Tissue Eng Part A. 2016 Feb; 22(3-4):318-25. Lee JK, Hu JC, Yamada S, Athanasiou KA. PMID: 26729374; PMCID: PMC4779322.
    View in: PubMed Mentions: 11 Fields:
    Translation:AnimalsCells
  18. Force dependent biotinylation of myosin IIA by α-catenin tagged with a promiscuous biotin ligase. PLoS One. 2015; 10(3):e0122886. Ueda S, Blee AM, Macway KG, Renner DJ, Yamada S. PMID: 25806963; PMCID: PMC4373798.
    View in: PubMed Mentions: 14 Fields:
    Translation:AnimalsCells
  19. Rho GTPases and the downstream effectors actin-related protein 2/3 (Arp2/3) complex and myosin II induce membrane fusion at self-contacts. J Biol Chem. 2015 Feb 06; 290(6):3238-47. Sumida GM, Yamada S. PMID: 25527498; PMCID: PMC4318998.
    View in: PubMed Mentions: 17 Fields:
    Translation:AnimalsCells
  20. Self-contact elimination by membrane fusion. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):18958-63. Sumida GM, Yamada S. PMID: 24191042; PMCID: PMC3839738.
    View in: PubMed Mentions: 12 Fields:
    Translation:HumansAnimalsCells
  21. Myosin IIA deficient cells migrate efficiently despite reduced traction forces at cell periphery. Biol Open. 2013 Apr 15; 2(4):368-72. Jorrisch MH, Shih W, Yamada S. PMID: 23616920; PMCID: PMC3625864.
    View in: PubMed Mentions: 29 Fields:
  22. N-cadherin dependent collective cell invasion of prostate cancer cells is regulated by the N-terminus of α-catenin. PLoS One. 2013; 8(1):e55069. Cui Y, Yamada S. PMID: 23359820; PMCID: PMC3554680.
    View in: PubMed Mentions: 30 Fields:
    Translation:HumansCells
  23. N-cadherin as a key regulator of collective cell migration in a 3D environment. Cell Adh Migr. 2012 Nov-Dec; 6(6):513-7. Shih W, Yamada S. PMID: 23076138; PMCID: PMC3547896.
    View in: PubMed Mentions: 25 Fields:
    Translation:HumansAnimalsCells
  24. The cargo of CRPPR-conjugated liposomes crosses the intact murine cardiac endothelium. J Control Release. 2012 Oct 10; 163(1):10-7. Zhang H, Li N, Sirish P, Mahakian L, Ingham E, Curry FR, Yamada S, Chiamvimonvat N, Ferrara KW. PMID: 22776291; PMCID: PMC3552610.
    View in: PubMed Mentions: 13 Fields:
    Translation:Animals
  25. Tandem zyxin LIM sequences do not enhance force sensitive accumulation. Biochem Biophys Res Commun. 2012 Jun 15; 422(4):653-7. Steele AN, Sumida GM, Yamada S. PMID: 22609203; PMCID: PMC3377793.
    View in: PubMed Mentions: 3 Fields:
    Translation:AnimalsCells
  26. N-cadherin-mediated cell-cell adhesion promotes cell migration in a three-dimensional matrix. J Cell Sci. 2012 Aug 01; 125(Pt 15):3661-70. Shih W, Yamada S. PMID: 22467866; PMCID: PMC3445327.
    View in: PubMed Mentions: 67 Fields:
    Translation:AnimalsCells
  27. E-cadherin plays an essential role in collective directional migration of large epithelial sheets. Cell Mol Life Sci. 2012 Aug; 69(16):2779-89. Li L, Hartley R, Reiss B, Sun Y, Pu J, Wu D, Lin F, Hoang T, Yamada S, Jiang J, Zhao M. PMID: 22410739; PMCID: PMC3459324.
    View in: PubMed Mentions: 77 Fields:
    Translation:AnimalsCells
  28. Live-cell imaging of migrating cells expressing fluorescently-tagged proteins in a three-dimensional matrix. J Vis Exp. 2011 Dec 22; (58). Shih W, Yamada S. PMID: 22215133; PMCID: PMC3369670.
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    Translation:AnimalsCells
  29. Myosin II activity dependent and independent vinculin recruitment to the sites of E-cadherin-mediated cell-cell adhesion. BMC Cell Biol. 2011 Nov 03; 12:48. Sumida GM, Tomita TM, Shih W, Yamada S. PMID: 22054176; PMCID: PMC3215179.
    View in: PubMed Mentions: 22 Fields:
    Translation:AnimalsCells
  30. The LIM domain of zyxin is sufficient for force-induced accumulation of zyxin during cell migration. Biophys J. 2011 Sep 07; 101(5):1069-75. Uemura A, Nguyen TN, Steele AN, Yamada S. PMID: 21889443; PMCID: PMC3164133.
    View in: PubMed Mentions: 42 Fields:
    Translation:HumansAnimalsCells
  31. Single-cell adhesion tests against functionalized microspheres arrayed on AFM cantilevers confirm heterophilic E- and N-cadherin binding. Biophys J. 2010 Dec 15; 99(12):L100-2. Ounkomol C, Yamada S, Heinrich V. PMID: 21156120; PMCID: PMC3000485.
    View in: PubMed Mentions: 13 Fields:
    Translation:HumansAnimalsCells
  32. Zyxin-mediated actin assembly is required for efficient wound closure. J Biol Chem. 2010 Nov 12; 285(46):35439-45. Nguyen TN, Uemura A, Shih W, Yamada S. PMID: 20801875; PMCID: PMC2975167.
    View in: PubMed Mentions: 24 Fields:
    Translation:AnimalsCells
  33. Myosin IIA dependent retrograde flow drives 3D cell migration. Biophys J. 2010 Apr 21; 98(8):L29-31. Shih W, Yamada S. PMID: 20409454; PMCID: PMC2856159.
    View in: PubMed Mentions: 35 Fields:
    Translation:AnimalsCells
  34. Biochemical and structural analysis of alpha-catenin in cell-cell contacts. Biochem Soc Trans. 2008 Apr; 36(Pt 2):141-7. Pokutta S, Drees F, Yamada S, Nelson WJ, Weis WI. PMID: 18363554; PMCID: PMC3369830.
    View in: PubMed Mentions: 47 Fields:
    Translation:AnimalsCells
  35. Localized zones of Rho and Rac activities drive initiation and expansion of epithelial cell-cell adhesion. J Cell Biol. 2007 Jul 30; 178(3):517-27. Yamada S, Nelson WJ. PMID: 17646397; PMCID: PMC2064836.
    View in: PubMed Mentions: 250 Fields:
    Translation:AnimalsCells
  36. Synapses: sites of cell recognition, adhesion, and functional specification. Annu Rev Biochem. 2007; 76:267-94. Yamada S, Nelson WJ. PMID: 17506641; PMCID: PMC3368613.
    View in: PubMed Mentions: 62 Fields:
    Translation:AnimalsCells
  37. Alpha-catenin is a molecular switch that binds E-cadherin-beta-catenin and regulates actin-filament assembly. Cell. 2005 Dec 02; 123(5):903-15. Drees F, Pokutta S, Yamada S, Nelson WJ, Weis WI. PMID: 16325583; PMCID: PMC3369825.
    View in: PubMed Mentions: 486 Fields:
    Translation:AnimalsCells
  38. Deconstructing the cadherin-catenin-actin complex. Cell. 2005 Dec 02; 123(5):889-901. Yamada S, Pokutta S, Drees F, Weis WI, Nelson WJ. PMID: 16325582; PMCID: PMC3368712.
    View in: PubMed Mentions: 485 Fields:
    Translation:AnimalsCells
  39. Self-organization of an acentrosomal microtubule network at the basal cortex of polarized epithelial cells. J Cell Biol. 2005 Dec 05; 171(5):845-55. Reilein A, Yamada S, Nelson WJ. PMID: 16314429; PMCID: PMC2171299.
    View in: PubMed Mentions: 27 Fields:
    Translation:HumansAnimalsCells
  40. Interaction of cadherin with the actin cytoskeleton. Novartis Found Symp. 2005; 269:159-68; discussion 168-77, 223-30. Nelson WJ, Drees F, Yamada S. PMID: 16358407.
    View in: PubMed Mentions: 6 Fields:
    Translation:AnimalsCells
  41. Pairwise assembly determines the intrinsic potential for self-organization and mechanical properties of keratin filaments. Mol Biol Cell. 2002 Jan; 13(1):382-91. Yamada S, Wirtz D, Coulombe PA. PMID: 11809846; PMCID: PMC65095.
    View in: PubMed Mentions: 32 Fields:
    Translation:HumansCells

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

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