Andrew Bartko • UCSD Profiles (original) (raw)
- Calculating fast differential genome coverages among metagenomic sources using micov. Commun Biol. 2025 Nov 20; 8(1):1624. Weng Y, Guccione C, McDonald D, Oles R, Devkota S, Kopylova E, Sepich-Poore GD, Salido RA, Din MO, Song SJ, Curtius K, Chu H, Bartko A, Hasty J, Knight R. PMID: 41266796; PMCID: PMC12635244.
View in: PubMed Mentions: Translation:Humans - Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort. Nat Commun. 2025 Sep 30; 16(1):8635. Singh R, McDonald D, Hernandez AR, Song SJ, Bartko A, Knight R, Salathé M. PMID: 41028733; PMCID: PMC12484809.
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Translation:HumansCTClinical Trials - Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics. Res Sq. 2025 Sep 10. Knight R, Din MO, Salido R, Wright G, Brennan C, Ambre M, Hansen L, Boyer T, Cao J, Oles R, Patel L, Weng Y, McDonald D, Bhute S, Solini G, Karthikeyan S, Humphrey G, DeHoff P, Kralicek S, Levy J, Zeller M, Hecht G, Laurent L, Yeo G, Andersen K, Bartko A. PMID: 40964040; PMCID: PMC12440100.
View in: PubMed Mentions: - Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis. Commun Biol. 2025 Aug 06; 8(1):1159. Myers T, Song SJ, Chen Y, De Pessemier B, Khatib L, McDonald D, Huang S, Gallo R, Callewaert C, Havulinna AS, Lahti L, Roeselers G, Laiola M, Shetty SA, Kelley ST, Knight R, Bartko A. PMID: 40770074; PMCID: PMC12328700.
View in: PubMed Mentions: 1 Translation:Humans - A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population. mSystems. 2025 Jul 22; 10(7):e0054425. Khatib L, Song SJ, Dilmore AH, Sanders JG, Brennan C, Hernandez AR, Myers T, Oles R, Farmer S, Cowart C, Birmingham A, Diaz EA, Nizet O, Gilbert K, Litwin N, Das P, Nowinski B, Bryant M, Tribelhorn C, Sanders-Bodai K, Chaumont S, Knol J, Roeselers G, Laiola M, Shetty SA, Veiga P, Tap J, Derrien M, Koutnikova H, Cotillard A, Lay C, Tovar AR, Torres N, Arteaga L, González A, McDonald D, Bartko A, Knight R. PMID: 40586597; PMCID: PMC12282181.
View in: PubMed Mentions: 1 Fields:
Translation:HumansCells - ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias. Mol Biol Rep. 2025 Feb 21; 52(1):258. Bhute S, Sanders JG, Song SJ, Lavoie S, Swafford A, Guccione C, Patel L, Gonzalez A, Rooks MG, Knight R, Bartko A. PMID: 39982577; PMCID: PMC11845529.
View in: PubMed Mentions: 2 Fields:
Translation:HumansAnimals - Author Correction: Greengenes2 unifies microbial data in a single reference tree. Nat Biotechnol. 2024 May; 42(5):813. McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. PMID: 37853258; PMCID: PMC11098728.
View in: PubMed Mentions: 8 Fields: - Greengenes2 unifies microbial data in a single reference tree. Nat Biotechnol. 2024 May; 42(5):715-718. McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. PMID: 37500913; PMCID: PMC10818020.
View in: PubMed Mentions: 237 Fields:
Translation:Cells - Perspective on Improving Environmental Monitoring of Biothreats. Front Bioeng Biotechnol. 2018; 6:147. Dunbar J, Pillai S, Wunschel D, Dickens M, Morse SA, Franz D, Bartko A, Challacombe J, Persons T, Hughes MA, Blanke SR, Holland R, Hutchison J, Merkley ED, Campbell K, Branda CS, Sharma S, Lindler L, Anderson K, Hodge D. PMID: 30406093; PMCID: PMC6207620.
View in: PubMed Mentions: 2 - An amphiphilic approach to nanocrystal quantum dot-titania nanocomposites. J Am Chem Soc. 2004 Jan 28; 126(3):714-5. Petruska MA, Bartko AP, Klimov VI. PMID: 14733535.
View in: PubMed Mentions: 4 Fields: - Size-correlated spectroscopy and imaging of rare-earth-doped nanocrystals. Appl Opt. 2003 Apr 20; 42(12):2132-9. Mehta A, Thundat T, Barnes MD, Chhabra V, Bhargava R, Bartko AP, Dickson RM. PMID: 12716155.
View in: PubMed Mentions: 1 Fields: - Three-dimensional single molecule rotational diffusion in glassy state polymer films. Phys Rev Lett. 2002 Jul 08; 89(2):026101. Bartko AP, Xu K, Dickson RM. PMID: 12097008.
View in: PubMed Mentions: 10 Fields: - Photoactivated fluorescence from individual silver nanoclusters. Science. 2001 Jan 05; 291(5501):103-6. Peyser LA, Vinson AE, Bartko AP, Dickson RM. PMID: 11141556.
View in: PubMed Mentions: 60 Fields: - [Use of liquid chromatography for the determination of formaldehyde in biological materials]. Vet Med (Praha). 1984 Aug; 29(8):503-9. Bartko A, Pár O, Prikryl J. PMID: 6438866.
View in: PubMed Mentions: Fields:
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
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