Celeste Allaband • UCSD Profiles (original) (raw)
- Farnesoid X receptor-dependent microbiome-bile acid signaling mediates obstructive sleep apnea-induced atherosclerosis. bioRxiv. 2026 Apr 01. Xue J, Allaband C, Zuffa S, Zhou D, Poulsen O, Meadows J, McDonald D, Ambre M, Ackermann G, Birmingham A, Cao J, Mohanty I, Dorrestein PC, Knight R, Haddad GG. PMID: 41959535; PMCID: PMC13060084.
View in: PubMed Mentions: - Cats on dry kibble diet have significantly different microbiome than those on canned wet food. npj Vet Sci. 2026; 1(1):1. Allaband C, Ganz HH, Rojas CA, Knight R. PMID: 42006912; PMCID: PMC13086222.
View in: PubMed Mentions: - Quantitative Food Compounds Enable Dietary Ontology Referencing across 500 Foods and Human Plasma. Anal Chem. 2026 Feb 03; 98(4):3160-3176. Agongo J, Gouda H, McMaugh A, Allaband C, Aghili SM, Sala-Climent M, Xing S, Cao J, Zemlin J, Wang M, Dorrestein K, Holt T, Knight R, Boland BS, Guma M, Dorrestein PC. PMID: 41549429; PMCID: PMC12874208.
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Translation:Humans - Environmental and maternal imprints on infant gut metabolic development. Cell Host Microbe. 2025 Dec 10; 33(12):2130-2147.e7. Kvitne KE, Allaband C, Onuora JC, Perry D, Zuffa S, Patel L, Charron-Lamoureux V, Mohanty I, Sejane K, Patan A, Mahmud AA, Ahmed T, Bassani DG, González A, Hamer DH, Haque R, Ho B, Hossain MI, Islam MS, McDonald D, Pell LG, Qamar H, Roth DE, Saha S, Shah PS, Siddiqui MM, Sarker SA, Sultana S, Thomas S, Burnett LA, Tsunoda SM, Bode L, Dorrestein PC, Knight R. PMID: 41308639; PMCID: PMC12875530.
View in: PubMed Mentions: - Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes. Microbiol Spectr. 2025 Nov 04; 13(11):e0191225. Brennan C, Shaffer JP, Belda-Ferre P, Mohanty I, Weng Y, Cantrell K, Ackermann G, Allaband C, Bryant M, Farmer S, González A, McDonald D, Martino C, Meehan MJ, Rahman G, Salido RA, Schwartz T, Song SJ, Tribelhorn C, Tubb HM, Dorrestein PC, Knight R. PMID: 41070991; PMCID: PMC12584695.
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Translation:HumansAnimals - Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis. Nutrients. 2025 Aug 22; 17(17). Sala-Climent M, Bu K, Coras R, Cedeno M, Zuffa S, Murillo-Saich J, Mannochio-Russo H, Allaband C, Hose MK, Quan A, Choi SI, Nguyen K, Golshan S, Blank RB, Holt T, Lane NE, Knight R, Scher J, Dorrestein P, Clemente J, Guma M. PMID: 40944120; PMCID: PMC12430150.
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Translation:HumansCTClinical Trials - Environmental and Maternal Imprints on Infant Gut Metabolic Programming. bioRxiv. 2025 Jul 24. Kvitne KE, Allaband C, Onuora JC, Perry D, Zuffa S, Patel L, Charron-Lamoureux V, Mohanty I, Sejane K, Patan A, Al Mahmud A, Ahmed T, Bassani DG, González A, Hamer DH, Haque R, Ho B, Hossain MI, Islam MS, McDonald D, Pell LG, Qamar H, Roth DE, Saha S, Shah PS, Siddiqui MM, Sarker SA, Sultana S, Thomas S, Burnett LA, Tsunoda SM, Bode L, Dorrestein PC, Knight R. PMID: 40777448; PMCID: PMC12330730.
View in: PubMed Mentions: - Correction for Tang-Wing et al., "Impact of diet change on the gut microbiome of common marmosets (Callithrix jacchus)". mSystems. 2025 Jul 22; 10(7):e0032725. Tang-Wing C, Mohanty I, Bryant M, Makowski K, Melendez D, Dorrestein PC, Knight R, Caraballo-Rodríguez AM, Allaband C, Jenné K. PMID: 40459257; PMCID: PMC12282194.
View in: PubMed Mentions: Fields: - View in: PubMed Mentions: 4 Fields:
Translation:AnimalsCells - Gut Microbiota and Derived Metabolites Mediate Obstructive Sleep Apnea Induced Atherosclerosis. bioRxiv. 2024 Nov 19. Xue J, Allaband C, Zuffa S, Poulsen O, Meadows J, Zhou D, Dorrestein PC, Knight R, Haddad GG. PMID: 39605650; PMCID: PMC11601605.
View in: PubMed Mentions: - Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies. mSystems. 2024 Oct 22; 9(10):e0098524. Brennan C, Belda-Ferre P, Zuffa S, Charron-Lamoureux V, Mohanty I, Ackermann G, Allaband C, Ambre M, Boyer T, Bryant M, Cantrell K, Gonzalez A, McDonald D, Salido RA, Song SJ, Wright G, Dorrestein PC, Knight R. PMID: 39283083; PMCID: PMC11494942.
View in: PubMed Mentions: 9 Fields:
Translation:Humans - Impact of diet change on the gut microbiome of common marmosets (Callithrix jacchus). mSystems. 2024 Aug 20; 9(8):e0010824. Tang-Wing C, Mohanty I, Bryant M, Makowski K, Melendez D, Dorrestein PC, Knight R, Caraballo-Rodríguez AM, Allaband C, Jenné K. PMID: 38975760; PMCID: PMC11334461.
View in: PubMed Mentions: 2 Fields:
Translation:AnimalsCells - Time of sample collection is critical for the replicability of microbiome analyses. Nat Metab. 2024 Jul; 6(7):1282-1293. Allaband C, Lingaraju A, Flores Ramos S, Kumar T, Javaheri H, Tiu MD, Dantas Machado AC, Richter RA, Elijah E, Haddad GG, Leone VA, Dorrestein PC, Knight R, Zarrinpar A. PMID: 38951660; PMCID: PMC11309016.
View in: PubMed Mentions: 27 Fields:
Translation:Animals - The changing metabolic landscape of bile acids - keys to metabolism and immune regulation. Nat Rev Gastroenterol Hepatol. 2024 Jul; 21(7):493-516. Mohanty I, Allaband C, Mannochio-Russo H, El Abiead Y, Hagey LR, Knight R, Dorrestein PC. PMID: 38575682; PMCID: PMC12248421.
View in: PubMed Mentions: 48 Fields:
Translation:Humans - Evaluation of the safety and efficacy of fecal microbiota transplantations in bottlenose dolphins (Tursiops truncatus) using metagenomic sequencing. J Appl Microbiol. 2024 Feb 01; 135(2). Linnehan BK, Kodera SM, Allard SM, Brodie EC, Allaband C, Knight R, Lutz HL, Carroll MC, Meegan JM, Jensen ED, Gilbert JA. PMID: 38305096; PMCID: PMC10853691.
View in: PubMed Mentions: 1 Fields:
Translation:Animals - BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations. bioRxiv. 2023 Feb 02. Rahman G, Morton JT, Martino C, Sepich-Poore GD, Allaband C, Guccione C, Chen Y, Hakim D, Estaki M, Knight R. PMID: 36778470; PMCID: PMC9915500.
View in: PubMed Mentions: - Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype. mSystems. 2022 06 28; 7(3):e0005022. Martino C, McDonald D, Cantrell K, Dilmore AH, Vázquez-Baeza Y, Shenhav L, Shaffer JP, Rahman G, Armstrong G, Allaband C, Song SJ, Knight R. PMID: 35477286; PMCID: PMC9238373.
View in: PubMed Mentions: 12 Fields:
Translation:Humans - Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. Microbiome. 2021 06 30; 9(1):151. Huang S, Jiang S, Huo D, Allaband C, Estaki M, Cantu V, Belda-Ferre P, Vázquez-Baeza Y, Zhu Q, Ma C, Li C, Zarrinpar A, Liu YY, Knight R, Zhang J. PMID: 34193290; PMCID: PMC8247228.
View in: PubMed Mentions: 28 Fields:
Translation:HumansAnimalsCells - Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome. mSystems. 2021 Jun 29; 6(3):101128msystems0011621. Allaband C, Lingaraju A, Martino C, Russell B, Tripathi A, Poulsen O, Dantas Machado AC, Zhou D, Xue J, Elijah E, Malhotra A, Dorrestein PC, Knight R, Haddad GG, Zarrinpar A. PMID: 34184915; PMCID: PMC8269208.
View in: PubMed Mentions: 27 Fields: - Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome. Front Physiol. 2021; 12:663950. Xue J, Allaband C, Zhou D, Poulsen O, Martino C, Jiang L, Tripathi A, Elijah E, Dorrestein PC, Knight R, Zarrinpar A, Haddad GG. PMID: 33897472; PMCID: PMC8060652.
View in: PubMed Mentions: 20 - Human Skin, Oral, and Gut Microbiomes Predict Chronological Age. mSystems. 2020 Feb 11; 5(1). Huang S, Haiminen N, Carrieri AP, Hu R, Jiang L, Parida L, Russell B, Allaband C, Zarrinpar A, Vázquez-Baeza Y, Belda-Ferre P, Zhou H, Kim HC, Swafford AD, Knight R, Xu ZZ. PMID: 32047061; PMCID: PMC7018528.
View in: PubMed Mentions: 88 Fields: - Engineering the microbiome for animal health and conservation. Exp Biol Med (Maywood). 2019 04; 244(6):494-504. Jin Song S, Woodhams DC, Martino C, Allaband C, Mu A, Javorschi-Miller-Montgomery S, Suchodolski JS, Knight R. PMID: 30776908; PMCID: PMC6547002.
View in: PubMed Mentions: 45 Fields:
Translation:Animals - Microbiome 101: Studying, Analyzing, and Interpreting Gut Microbiome Data for Clinicians. Clin Gastroenterol Hepatol. 2019 01; 17(2):218-230. Allaband C, McDonald D, Vázquez-Baeza Y, Minich JJ, Tripathi A, Brenner DA, Loomba R, Smarr L, Sandborn WJ, Schnabl B, Dorrestein P, Zarrinpar A, Knight R. PMID: 30240894; PMCID: PMC6391518.
View in: PubMed Mentions: 149 Fields:
Translation:Humans - Pre-Natal Exposure to Mouse Parvovirus at Day 5 and 12 Gestation Does Not Induce Immune Tolerance. PLoS One. 2016; 11(5):e0156248. Kendall LV, Allaband C, Henderson KS. PMID: 27219540; PMCID: PMC4878799.
View in: PubMed Mentions: 1 Fields:
Translation:AnimalsCells
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
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