Qiaozhen Ye • UCSD Profiles (original) (raw)

  1. An allosteric network governs Tom70 conformational dynamics to coordinate mitochondrial import. Structure. 2026 Feb 05; 34(2):273-283.e6. Bachochin MJ, McGuire KL, Cook BD, Ye Q, Silletti S, Corbett KD, Komives EA, Herzik MA. PMID: 41386227.
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  2. Mechanistic basis for protein conjugation in a diverged bacterial ubiquitination pathway. Nat Struct Mol Biol. 2026 Jan; 33(1):71-83. Ye Q, Gong M, Cai J, Chambers LR, Zhou H, Suhandynata RT, Corbett KD. PMID: 41184514; PMCID: PMC12885553.
    View in: PubMed Mentions: 1 Fields:
    Translation:Cells
  3. Bipartite chromatin recognition by Hop1 from two diverged Holozoa. Life Sci Alliance. 2025 Nov; 8(11). Rodriguez AA, Cirulli AE, Chau K, Nguyen J, Ye Q, Corbett KD. PMID: 40829932; PMCID: PMC12365614.
    View in: PubMed Mentions: Fields:
    Translation:AnimalsCells
  4. An allosteric network governs Tom70 conformational dynamics to coordinate mitochondrial protein import. bioRxiv. 2025 Jul 23. Bachochin MJ, McGuire KL, Cook BD, Ye Q, Silletti S, Corbett KD, Komives EA, Herzik MA. PMID: 40777325; PMCID: PMC12330529.
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  5. Bipartite chromatin recognition by Hop1 from two diverged holozoa. bioRxiv. 2025 Jun 15. Rodriguez AA, Cirulli AE, Chau K, Nguyen J, Ye Q, Corbett KD. PMID: 40661486; PMCID: PMC12259197.
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  6. Structural diversity and oligomerization of bacterial ubiquitin-like proteins. Structure. 2025 Jun 05; 33(6):1016-1026.e4. Gong M, Ye Q, Gu Y, Chambers LR, Bobkov AA, Arakawa NK, Matyszewski M, Corbett KD. PMID: 40250427; PMCID: PMC12145246.
    View in: PubMed Mentions: 1 Fields:
    Translation:Cells
  7. Structural diversity and oligomerization of bacterial ubiquitin-like proteins. bioRxiv. 2024 Nov 25. Gong M, Ye Q, Gu Y, Chambers LR, Bobkov AA, Arakawa NK, Matyszewski M, Corbett KD. PMID: 39605667; PMCID: PMC11601603.
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  8. Mechanistic basis for protein conjugation in a diverged bacterial ubiquitination pathway. bioRxiv. 2024 Nov 25. Ye Q, Gong M, Chambers LR, Corbett KD. PMID: 39605596; PMCID: PMC11601596.
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  9. A eukaryotic-like ubiquitination system in bacterial antiviral defence. Nature. 2024 Jul; 631(8022):843-849. Chambers LR, Ye Q, Cai J, Gong M, Ledvina HE, Zhou H, Whiteley AT, Suhandynata RT, Corbett KD. PMID: 39020180; PMCID: PMC11476048.
    View in: PubMed Mentions: 3 Fields:
    Translation:AnimalsCells
  10. Bacterial antiviral defense pathways encode eukaryotic-like ubiquitination systems. bioRxiv. 2023 Sep 26. Chambers LR, Ye Q, Cai J, Gong M, Ledvina HE, Zhou H, Whiteley AT, Suhandynata RT, Corbett KD. PMID: 37808811; PMCID: PMC10557695.
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  11. An E1-E2 fusion protein primes antiviral immune signalling in bacteria. Nature. 2023 04; 616(7956):319-325. Ledvina HE, Ye Q, Gu Y, Sullivan AE, Quan Y, Lau RK, Zhou H, Corbett KD, Whiteley AT. PMID: 36755092; PMCID: PMC10292035.
    View in: PubMed Mentions: 36 Fields:
    Translation:HumansCells
  12. Heat-shock chaperone HSPB1 regulates cytoplasmic TDP-43 phase separation and liquid-to-gel transition. Nat Cell Biol. 2022 09; 24(9):1378-1393. Lu S, Hu J, Arogundade OA, Goginashvili A, Vazquez-Sanchez S, Diedrich JK, Gu J, Blum J, Oung S, Ye Q, Yu H, Ravits J, Liu C, Yates JR, Cleveland DW. PMID: 36075972; PMCID: PMC9872726.
    View in: PubMed Mentions: 76 Fields:
    Translation:HumansCells
  13. Structure and activity of a bacterial defense-associated 3'-5' exonuclease. Protein Sci. 2022 07; 31(7):e4374. Liang Q, Richey ST, Ur SN, Ye Q, Lau RK, Corbett KD. PMID: 35762727; PMCID: PMC9214754.
    View in: PubMed Mentions: 6 Fields:
    Translation:AnimalsCells
  14. Control of bacterial immune signaling by a WYL domain transcription factor. Nucleic Acids Res. 2022 05 20; 50(9):5239-5250. Blankenchip CL, Nguyen JV, Lau RK, Ye Q, Gu Y, Corbett KD. PMID: 35536256; PMCID: PMC9122588.
    View in: PubMed Mentions: 31 Fields:
    Translation:Cells
  15. Structural Basis for SARS-CoV-2 Nucleocapsid Protein Recognition by Single-Domain Antibodies. Front Immunol. 2021; 12:719037. Ye Q, Lu S, Corbett KD. PMID: 34381460; PMCID: PMC8351461.
    View in: PubMed Mentions: 33 Fields:
    Translation:HumansCells
  16. Structural basis for SARS-CoV-2 Nucleocapsid protein recognition by single-domain antibodies. bioRxiv. 2021 Jun 01. Ye Q, Lu S, Corbett KD. PMID: 34100017; PMCID: PMC8183014.
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  17. The SARS-CoV-2 nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. Nat Commun. 2021 01 21; 12(1):502. Lu S, Ye Q, Singh D, Cao Y, Diedrich JK, Yates JR, Villa E, Cleveland DW, Corbett KD. PMID: 33479198; PMCID: PMC7820290.
    View in: PubMed Mentions: 276 Fields:
    Translation:HumansCells
  18. Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein. Protein Sci. 2020 09; 29(9):1890-1901. Ye Q, West AMV, Silletti S, Corbett KD. PMID: 32654247; PMCID: PMC7405475.
    View in: PubMed Mentions: 171 Fields:
    Translation:HumansCells
  19. The SARS-CoV-2 Nucleocapsid phosphoprotein forms mutually exclusive condensates with RNA and the membrane-associated M protein. bioRxiv. 2020 Jul 31. Lu S, Ye Q, Singh D, Villa E, Cleveland DW, Corbett KD. PMID: 32766587; PMCID: PMC7402048.
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  20. Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein. bioRxiv. 2020 Jun 08. Ye Q, West AMV, Silletti S, Corbett KD. PMID: 32511359; PMCID: PMC7263487.
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  21. Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity. Mol Cell. 2020 02 20; 77(4):723-733.e6. Lau RK, Ye Q, Birkholz EA, Berg KR, Patel L, Mathews IT, Watrous JD, Ego K, Whiteley AT, Lowey B, Mekalanos JJ, Kranzusch PJ, Jain M, Pogliano J, Corbett KD. PMID: 31932164; PMCID: PMC7065454.
    View in: PubMed Mentions: 104 Fields:
    Translation:Cells
  22. HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol Cell. 2020 02 20; 77(4):709-722.e7. Ye Q, Lau RK, Mathews IT, Birkholz EA, Watrous JD, Azimi CS, Pogliano J, Jain M, Corbett KD. PMID: 31932165; PMCID: PMC7036143.
    View in: PubMed Mentions: 81 Fields:
    Translation:Cells
  23. A conserved filamentous assembly underlies the structure of the meiotic chromosome axis. Elife. 2019 01 18; 8. West AM, Rosenberg SC, Ur SN, Lehmer MK, Ye Q, Hagemann G, Caballero I, Usón I, MacQueen AJ, Herzog F, Corbett KD. PMID: 30657449; PMCID: PMC6349405.
    View in: PubMed Mentions: 74 Fields:
    Translation:AnimalsCells
  24. TRIP13 and APC15 drive mitotic exit by turnover of interphase- and unattached kinetochore-produced MCC. Nat Commun. 2018 10 19; 9(1):4354. Kim DH, Han JS, Ly P, Ye Q, McMahon MA, Myung K, Corbett KD, Cleveland DW. PMID: 30341343; PMCID: PMC6195577.
    View in: PubMed Mentions: 28 Fields:
    Translation:Cells
  25. The AAA+ ATPase TRIP13 remodels HORMA domains through N-terminal engagement and unfolding. EMBO J. 2017 08 15; 36(16):2419-2434. Ye Q, Kim DH, Dereli I, Rosenberg SC, Hagemann G, Herzog F, Tóth A, Cleveland DW, Corbett KD. PMID: 28659378; PMCID: PMC5556265.
    View in: PubMed Mentions: 50 Fields:
    Translation:HumansCells
  26. Structure of the Saccharomyces cerevisiae Hrr25:Mam1 monopolin subcomplex reveals a novel kinase regulator. EMBO J. 2016 10 04; 35(19):2139-2151. Ye Q, Ur SN, Su TY, Corbett KD. PMID: 27491543; PMCID: PMC5048352.
    View in: PubMed Mentions: 20 Fields:
    Translation:AnimalsCells
  27. TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching. Elife. 2015 Apr 28; 4. Ye Q, Rosenberg SC, Moeller A, Speir JA, Su TY, Corbett KD. PMID: 25918846; PMCID: PMC4439613.
    View in: PubMed Mentions: 102 Fields:
    Translation:HumansAnimalsCells
  28. Sister kinetochores are mechanically fused during meiosis I in yeast. Science. 2014 Oct 10; 346(6206):248-51. Sarangapani KK, Duro E, Deng Y, Alves Fde L, Ye Q, Opoku KN, Ceto S, Rappsilber J, Corbett KD, Biggins S, Marston AL, Asbury CL. PMID: 25213378; PMCID: PMC4226495.
    View in: PubMed Mentions: 45 Fields:
    Translation:AnimalsCells
  29. Biochemical and structural evidence in support of a coherent model for the formation of the double-helical influenza A virus ribonucleoprotein. mBio. 2012 Dec 26; 4(1):e00467-12. Ye Q, Guu TS, Mata DA, Kuo RL, Smith B, Krug RM, Tao YJ. PMID: 23269829; PMCID: PMC3531806.
    View in: PubMed Mentions: 29 Fields:
    Translation:Cells
  30. Structural mechanism of ATP-induced polymerization of the partition factor ParF: implications for DNA segregation. J Biol Chem. 2012 Jul 27; 287(31):26146-54. Schumacher MA, Ye Q, Barge MT, Zampini M, Barillà D, Hayes F. PMID: 22674577; PMCID: PMC3406698.
    View in: PubMed Mentions: 24 Fields:
    Translation:Cells
  31. Sequence in the influenza A virus nucleoprotein required for viral polymerase binding and RNA synthesis. J Virol. 2012 Jul; 86(13):7292-7. Marklund JK, Ye Q, Dong J, Tao YJ, Krug RM. PMID: 22532672; PMCID: PMC3416340.
    View in: PubMed Mentions: 38 Fields:
    Translation:HumansCells
  32. RNA virus replication complexes. PLoS Pathog. 2010 Jul 22; 6(7):e1000943. Tao YJ, Ye Q. PMID: 20661480; PMCID: PMC2908549.
    View in: PubMed Mentions: 31 Fields:
    Translation:Cells
  33. Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding. Proc Natl Acad Sci U S A. 2009 Aug 04; 106(31):12992-7. Guu TS, Liu Z, Ye Q, Mata DA, Li K, Yin C, Zhang J, Tao YJ. PMID: 19622744; PMCID: PMC2722310.
    View in: PubMed Mentions: 127 Fields:
    Translation:Cells
  34. Interaction of the influenza a virus nucleocapsid protein with the viral RNA polymerase potentiates unprimed viral RNA replication. J Virol. 2009 Jan; 83(1):29-36. Newcomb LL, Kuo RL, Ye Q, Jiang Y, Tao YJ, Krug RM. PMID: 18945782; PMCID: PMC2612335.
    View in: PubMed Mentions: 62 Fields:
    Translation:Cells
  35. The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA. Nature. 2006 Dec 21; 444(7122):1078-82. Ye Q, Krug RM, Tao YJ. PMID: 17151603.
    View in: PubMed Mentions: 236 Fields:
    Translation:Cells
  36. [The expression of Aeromonas hydrophila ompTS gene and the immunogenicity of recombinant OmpTS]. Sheng Wu Gong Cheng Xue Bao. 2002 May; 18(3):300-3. Xie JF, Ye QZ, He JG, Dai WJ, Huang X, He MX, Chen C. PMID: 12192861.
    View in: PubMed Mentions: 1 Fields:
    Translation:AnimalsCells

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

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