Sinem Beyhan • UCSD Profiles (original) (raw)

  1. Detection of Neorickettsia risticii in antemortem fecal and postmortem fetal samples, with genomic insights from complete genome sequencing of a strain recovered from an aborted equine fetus. Vet Microbiol. 2025 Nov; 310:110705. Uprety T, Durazo J, Paul L, Metiner K, Ruby R, Loynachan A, Janes J, Kenndy L, Cassone L, Molly E, Quick M, Morgan J, Beyhan S, Erol E. PMID: 40913922.
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  2. Development of a Mouse Model of Coccidioidomycosis Using an Inhalation Exposure System. J Fungi (Basel). 2025 Aug 19; 11(8). Erlich JR, Rodriguez P, Yau KPS, Tate M, Carlin AF, Fierer J, Kirkland TN, Hoffman HM, Beyhan S, Croker BA. PMID: 40863551; PMCID: PMC12387420.
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  3. The Host Response to Coccidioidomycosis. J Fungi (Basel). 2024 Feb 25; 10(3). Kirkland TN, Hung CY, Shubitz LF, Beyhan S, Fierer J. PMID: 38535182; PMCID: PMC10971205.
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  4. Evaluation of Different Gene Prediction Tools in Coccidioides immitis. J Fungi (Basel). 2023 Nov 09; 9(11). Kirkland TN, Beyhan S, Stajich JE. PMID: 37998899; PMCID: PMC10672684.
    View in: PubMed Mentions: 1
  5. Retraction: Opposing signaling pathways regulate morphology in response to temperature in the fungal pathogen Histoplasma capsulatum. PLoS Biol. 2023 Mar; 21(3):e3002060. Rodriguez L, Voorhies M, Gilmore S, Beyhan S, Myint A, Sil A. PMID: 36944162; PMCID: PMC10030144.
    View in: PubMed Mentions: 2 Fields:
  6. Genetic Diversity of Human Fungal Pathogens. Curr Clin Microbiol Rep. 2023 Jun; 10(2):17-28. Freese J, Beyhan S. PMID: 37388463; PMCID: PMC10310308.
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  7. A novel biosensor for ultrasensitive detection of fungal genes. Biosens Bioelectron. 2023 Feb 15; 222:114986. Rana M, Yilmaz T, Cohen S, Beyhan S, Argun AA. PMID: 36508932; PMCID: PMC10289176.
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  8. Coccidioides Species: A Review of Basic Research: 2022. J Fungi (Basel). 2022 Aug 16; 8(8). Kirkland TN, Stevens DA, Hung CY, Beyhan S, Taylor JW, Shubitz LF, Duttke SH, Heidari A, Johnson RH, Deresinski SC, Lauer A, Fierer J. PMID: 36012847; PMCID: PMC9409882.
    View in: PubMed Mentions: 14
  9. The WOPR family protein Ryp1 is a key regulator of gene expression, development, and virulence in the thermally dimorphic fungal pathogen Coccidioides posadasii. PLoS Pathog. 2022 04; 18(4):e1009832. Mandel MA, Beyhan S, Voorhies M, Shubitz LF, Galgiani JN, Orbach MJ, Sil A. PMID: 35385558; PMCID: PMC9015156.
    View in: PubMed Mentions: 15 Fields:
    Translation:AnimalsCells
  10. Decoding Transcription Regulatory Mechanisms Associated with Coccidioides immitis Phase Transition Using Total RNA. mSystems. 2022 02 22; 7(1):e0140421. Duttke SH, Beyhan S, Singh R, Neal S, Viriyakosol S, Fierer J, Kirkland TN, Stajich JE, Benner C, Carlin AF. PMID: 35076277; PMCID: PMC8788335.
    View in: PubMed Mentions: 12 Fields:
    Translation:HumansAnimals
  11. Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species. mBio. 2022 02 22; 13(1):e0257421. Voorhies M, Cohen S, Shea TP, Petrus S, Muñoz JF, Poplawski S, Goldman WE, Michael TP, Cuomo CA, Sil A, Beyhan S. PMID: 35089059; PMCID: PMC8725592.
    View in: PubMed Mentions: 18 Fields:
    Translation:HumansAnimalsCells
  12. Transcriptional Analysis of Coccidioides immitis Mycelia and Spherules by RNA Sequencing. J Fungi (Basel). 2021 May 07; 7(5). Carlin AF, Beyhan S, Peña JF, Stajich JE, Viriyakosol S, Fierer J, Kirkland TN. PMID: 34067070; PMCID: PMC8150946.
    View in: PubMed Mentions: 14
  13. Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach. PLoS Comput Biol. 2021 03; 17(3):e1008857. Espinoza JL, Dupont CL, O'Rourke A, Beyhan S, Morales P, Spoering A, Meyer KJ, Chan AP, Choi Y, Nierman WC, Lewis K, Nelson KE. PMID: 33780444; PMCID: PMC8031737.
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  14. Genetic diversity of clinical and environmental Mucorales isolates obtained from an investigation of mucormycosis cases among solid organ transplant recipients. Microb Genom. 2020 12; 6(12). Nguyen MH, Kaul D, Muto C, Cheng SJ, Richter RA, Bruno VM, Liu G, Beyhan S, Sundermann AJ, Mounaud S, Pasculle AW, Nierman WC, Driscoll E, Cumbie R, Clancy CJ, Dupont CL. PMID: 33245689; PMCID: PMC8116672.
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  15. Predictive Signatures of 19 Antibiotic-Induced Escherichia coli Proteomes. ACS Infect Dis. 2020 08 14; 6(8):2120-2129. Yu Y, O'Rourke A, Lin YH, Singh H, Eguez RV, Beyhan S, Nelson KE. PMID: 32673475.
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  16. A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes. mSystems. 2020 Jul 28; 5(4). Rojas MI, Cavalcanti GS, McNair K, Benler S, Alker AT, Cobián-Güemes AG, Giluso M, Levi K, Rohwer F, Bailey BA, Beyhan S, Edwards RA, Shikuma NJ. PMID: 32723799; PMCID: PMC7394362.
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  17. Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling. Antimicrob Agents Chemother. 2020 02 21; 64(3). O'Rourke A, Beyhan S, Choi Y, Morales P, Chan AP, Espinoza JL, Dupont CL, Meyer KJ, Spoering A, Lewis K, Nierman WC, Nelson KE. PMID: 31907190; PMCID: PMC7038283.
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  18. Emerging Priorities for Microbiome Research. Front Microbiol. 2020; 11:136. Cullen CM, Aneja KK, Beyhan S, Cho CE, Woloszynek S, Convertino M, McCoy SJ, Zhang Y, Anderson MZ, Alvarez-Ponce D, Smirnova E, Karstens L, Dorrestein PC, Li H, Sen Gupta A, Cheung K, Powers JG, Zhao Z, Rosen GL. PMID: 32140140; PMCID: PMC7042322.
    View in: PubMed Mentions: 80
  19. Sensing the heat and the host: Virulence determinants of Histoplasma capsulatum. Virulence. 2019 12; 10(1):793-800. Beyhan S, Sil A. PMID: 31560240; PMCID: PMC6768255.
    View in: PubMed Mentions: 10 Fields:
    Translation:HumansAnimals
  20. Opposing signaling pathways regulate morphology in response to temperature in the fungal pathogen Histoplasma capsulatum. PLoS Biol. 2019 09; 17(9):e3000168. Rodriguez L, Voorhies M, Gilmore S, Beyhan S, Myint A, Sil A. PMID: 31568523; PMCID: PMC6786654.
    View in: PubMed Mentions: 15 Fields:
    Translation:AnimalsCells
  21. A Bacterial Phage Tail-like Structure Kills Eukaryotic Cells by Injecting a Nuclease Effector. Cell Rep. 2019 07 09; 28(2):295-301.e4. Rocchi I, Ericson CF, Malter KE, Zargar S, Eisenstein F, Pilhofer M, Beyhan S, Shikuma NJ. PMID: 31291567.
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  22. Secondary Metabolites of Onygenales Fungi Exemplified by Aioliomyces pyridodomos. J Nat Prod. 2019 06 28; 82(6):1616-1626. Lin Z, Kakule TB, Reilly CA, Beyhan S, Schmidt EW. PMID: 31155876; PMCID: PMC7093054.
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  23. Onydecalins, Fungal Polyketides with Anti- Histoplasma and Anti-TRP Activity. J Nat Prod. 2018 12 28; 81(12):2605-2611. Lin Z, Phadke S, Lu Z, Beyhan S, Abdel Aziz MH, Reilly C, Schmidt EW. PMID: 30507122; PMCID: PMC6474802.
    View in: PubMed Mentions: 7 Fields:
    Translation:HumansAnimalsCells
  24. The LonA Protease Regulates Biofilm Formation, Motility, Virulence, and the Type VI Secretion System in Vibrio cholerae. J Bacteriol. 2016 Jan 11; 198(6):973-85. Rogers A, Townsley L, Gallego-Hernandez AL, Beyhan S, Kwuan L, Yildiz FH. PMID: 26755629; PMCID: PMC4772603.
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  25. A temperature-responsive network links cell shape and virulence traits in a primary fungal pathogen. PLoS Biol. 2013 Jul; 11(7):e1001614. Beyhan S, Gutierrez M, Voorhies M, Sil A. PMID: 23935449; PMCID: PMC3720256.
    View in: PubMed Mentions: 79 Fields:
    Translation:Animals
  26. The Vibrio cholerae virulence regulatory cascade controls glucose uptake through activation of TarA, a small regulatory RNA. Mol Microbiol. 2010 Dec; 78(5):1171-81. Richard AL, Withey JH, Beyhan S, Yildiz F, DiRita VJ. PMID: 21091503; PMCID: PMC3064952.
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  27. Identification and characterization of a phosphodiesterase that inversely regulates motility and biofilm formation in Vibrio cholerae. J Bacteriol. 2010 Sep; 192(18):4541-52. Liu X, Beyhan S, Lim B, Linington RG, Yildiz FH. PMID: 20622061; PMCID: PMC2937418.
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  28. Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science. 2010 Feb 12; 327(5967):866-8. Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H. PMID: 20150502; PMCID: PMC2828054.
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  29. The Vibrio cholerae flagellar regulatory hierarchy controls expression of virulence factors. J Bacteriol. 2009 Nov; 191(21):6555-70. Syed KA, Beyhan S, Correa N, Queen J, Liu J, Peng F, Satchell KJ, Yildiz F, Klose KE. PMID: 19717600; PMCID: PMC2795290.
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  30. Cell envelope perturbation induces oxidative stress and changes in iron homeostasis in Vibrio cholerae. J Bacteriol. 2009 Sep; 191(17):5398-408. Sikora AE, Beyhan S, Bagdasarian M, Yildiz FH, Sandkvist M. PMID: 19542276; PMCID: PMC2725621.
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  31. Indole acts as an extracellular cue regulating gene expression in Vibrio cholerae. J Bacteriol. 2009 Jun; 191(11):3504-16. Mueller RS, Beyhan S, Saini SG, Yildiz FH, Bartlett DH. PMID: 19329638; PMCID: PMC2681914.
    View in: PubMed Mentions: 86 Fields:
    Translation:Cells
  32. Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae. J Bacteriol. 2008 Nov; 190(22):7392-405. Beyhan S, Odell LS, Yildiz FH. PMID: 18790873; PMCID: PMC2576663.
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  33. Bacterial gene expression analysis using microarrays. J Vis Exp. 2007; (4):206. Beyhan S, Yildiz F. PMID: 18979010; PMCID: PMC2556170.
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  34. Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway. Mol Microbiol. 2007 Feb; 63(4):995-1007. Beyhan S, Yildiz FH. PMID: 17233827.
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  35. Regulation of Vibrio polysaccharide synthesis and virulence factor production by CdgC, a GGDEF-EAL domain protein, in Vibrio cholerae. J Bacteriol. 2007 Feb; 189(3):717-29. Lim B, Beyhan S, Yildiz FH. PMID: 17122338; PMCID: PMC1797307.
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  36. Regulation of rugosity and biofilm formation in Vibrio cholerae: comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR. J Bacteriol. 2007 Jan; 189(2):388-402. Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH. PMID: 17071756; PMCID: PMC1797413.
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  37. Differences in gene expression between the classical and El Tor biotypes of Vibrio cholerae O1. Infect Immun. 2006 Jun; 74(6):3633-42. Beyhan S, Tischler AD, Camilli A, Yildiz FH. PMID: 16714595; PMCID: PMC1479229.
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  38. Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level. J Bacteriol. 2006 May; 188(10):3600-13. Beyhan S, Tischler AD, Camilli A, Yildiz FH. PMID: 16672614; PMCID: PMC1482859.
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  39. Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation. Mol Microbiol. 2006 Apr; 60(2):331-48. Lim B, Beyhan S, Meir J, Yildiz FH. PMID: 16573684.
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This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

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