Xuan Zhang • UCSD Profiles (original) (raw)

  1. Systematic evaluation of the impact of promoter proximal short tandem repeats on expression. bioRxiv. 2025 Sep 17. Zhang X, Zhang L, Wang E, Benton S, Modolo E, Maksimov M, Shleizer-Burko S, Gong Q, Wang C, Lamkin M, Mendenhall E, Gymrek M, Goren A. PMID: 41001006; PMCID: PMC12458280.
    View in: PubMed Mentions:
  2. Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation. Nat Commun. 2024 Jul 17; 15(1):6031. Zhang X, Xu J, Hu J, Zhang S, Hao Y, Zhang D, Qian H, Wang D, Fu XD. PMID: 39019869; PMCID: PMC11255242.
    View in: PubMed Mentions: 5 Fields:
    Translation:HumansAnimalsCells
  3. Polymorphic short tandem repeats make widespread contributions to blood and serum traits. Cell Genom. 2023 12 13; 3(12):100458. Margoliash J, Fuchs S, Li Y, Zhang X, Massarat A, Goren A, Gymrek M. PMID: 38116119; PMCID: PMC10726533.
    View in: PubMed Mentions: 26 Fields:
  4. Sequential Polyadenylation to Enable Alternative mRNA 3' End Formation. Mol Cells. 2023 Jan 31; 46(1):57-64. Hao Y, Cai T, Liu C, Zhang X, Fu XD. PMID: 36697238; PMCID: PMC9880608.
    View in: PubMed Mentions: 7 Fields:
    Translation:Cells
  5. Site-Specific and Enzymatic Cross-Linking of sgRNA Enables Wavelength-Selectable Photoactivated Control of CRISPR Gene Editing. J Am Chem Soc. 2022 Mar 16; 144(10):4487-4495. Zhang D, Liu L, Jin S, Tota E, Li Z, Piao X, Zhang X, Fu XD, Devaraj NK. PMID: 35257575; PMCID: PMC9469474.
    View in: PubMed Mentions: 16 Fields:
    Translation:Animals
  6. Mapping R-Loops Using Catalytically Inactive RNaseH1 (R-ChIP). Methods Mol Biol. 2022; 2528:359-372. Zhang X, Hao Y, Fu XD. PMID: 35704204; PMCID: PMC12393161.
    View in: PubMed Mentions: 2 Fields:
    Translation:Cells
  7. Author Correction: Reversing a model of Parkinson's disease with in situ converted nigral neurons. Nature. 2020 Aug; 584(7820):E17. Qian H, Kang X, Hu J, Zhang D, Liang Z, Meng F, Zhang X, Xue Y, Maimon R, Dowdy SF, Devaraj NK, Zhou Z, Mobley WC, Cleveland DW, Fu XD. PMID: 32724206.
    View in: PubMed Mentions: 4 Fields:
  8. Reversing a model of Parkinson's disease with in situ converted nigral neurons. Nature. 2020 06; 582(7813):550-556. Qian H, Kang X, Hu J, Zhang D, Liang Z, Meng F, Zhang X, Xue Y, Maimon R, Dowdy SF, Devaraj NK, Zhou Z, Mobley WC, Cleveland DW, Fu XD. PMID: 32581380; PMCID: PMC7521455.
    View in: PubMed Mentions: 263 Fields:
    Translation:HumansAnimalsCells
  9. Discovery and Verification of Extracellular miRNA Biomarkers for Non-invasive Prediction of Pre-eclampsia in Asymptomatic Women. Cell Rep Med. 2020 05 19; 1(2). Srinivasan S, Treacy R, Herrero T, Olsen R, Leonardo TR, Zhang X, DeHoff P, To C, Poling LG, Fernando A, Leon-Garcia S, Knepper K, Tran V, Meads M, Tasarz J, Vuppala A, Park S, Laurent CD, Bui T, Cheah PS, Overcash RT, Ramos GA, Roeder H, Ghiran I, Parast M, PAPR Study Consortium, Breakefield XO, Lueth AJ, Rust SR, Dufford MT, Fox AC, Hickok DE, Burchard J, Boniface JJ, Laurent LC. PMID: 32864636; PMCID: PMC7455024.
    View in: PubMed Mentions: 29 Fields:
    Translation:HumansCells
  10. Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation. Cell. 2020 03 19; 180(6):1212-1227.e14. Gou LT, Lim DH, Ma W, Aubol BE, Hao Y, Wang X, Zhao J, Liang Z, Shao C, Zhang X, Meng F, Li H, Zhang X, Xu R, Li D, Rosenfeld MG, Mellon PL, Adams JA, Liu MF, Fu XD. PMID: 32169215; PMCID: PMC7190278.
    View in: PubMed Mentions: 43 Fields:
    Translation:AnimalsCells
  11. R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1. Nat Protoc. 2019 05; 14(5):1661-1685. Chen JY, Zhang X, Fu XD, Chen L. PMID: 30996261; PMCID: PMC6604627.
    View in: PubMed Mentions: 45 Fields:
    Translation:AnimalsCells
  12. Small RNA Sequencing across Diverse Biofluids Identifies Optimal Methods for exRNA Isolation. Cell. 2019 04 04; 177(2):446-462.e16. Srinivasan S, Yeri A, Cheah PS, Chung A, Danielson K, De Hoff P, Filant J, Laurent CD, Laurent LD, Magee R, Moeller C, Murthy VL, Nejad P, Paul A, Rigoutsos I, Rodosthenous R, Shah RV, Simonson B, To C, Wong D, Yan IK, Zhang X, Balaj L, Breakefield XO, Daaboul G, Gandhi R, Lapidus J, Londin E, Patel T, Raffai RL, Sood AK, Alexander RP, Das S, Laurent LC. PMID: 30951671; PMCID: PMC6557167.
    View in: PubMed Mentions: 161 Fields:
    Translation:HumansCells
  13. The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations. Mol Cell. 2018 02 01; 69(3):412-425.e6. Chen L, Chen JY, Huang YJ, Gu Y, Qiu J, Qian H, Shao C, Zhang X, Hu J, Li H, He S, Zhou Y, Abdel-Wahab O, Zhang DE, Fu XD. PMID: 29395063; PMCID: PMC5957072.
    View in: PubMed Mentions: 173 Fields:
    Translation:HumansCells
  14. Oriented Nanofibrous Polymer Scaffolds Containing Protein-Loaded Porous Silicon Generated by Spray Nebulization. Adv Mater. 2018 Mar; 30(12):e1706785. Zuidema JM, Kumeria T, Kim D, Kang J, Wang J, Hollett G, Zhang X, Roberts DS, Chan N, Dowling C, Blanco-Suarez E, Allen NJ, Tuszynski MH, Sailor MJ. PMID: 29363828; PMCID: PMC6475500.
    View in: PubMed Mentions: 18 Fields:
    Translation:Animals
  15. R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters. Mol Cell. 2017 Nov 16; 68(4):745-757.e5. Chen L, Chen JY, Zhang X, Gu Y, Xiao R, Shao C, Tang P, Qian H, Luo D, Li H, Zhou Y, Zhang DE, Fu XD. PMID: 29104020; PMCID: PMC5957070.
    View in: PubMed Mentions: 230 Fields:
    Translation:HumansCells

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.

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