Deborah Dean • UCSF Profiles (original) (raw)

  1. Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia. mBio. 2026 Apr 23; e0053426. Olagoke O, Zheng X, Chung S, Mengistie HD, Asfaha K, Read TD, Dean D. PMID: 42023843.
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  2. CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis. Microbiol Resour Announc. 2026 Mar 12; 15(3):e0147025. Olagoke O, Read TD, Dean D. PMID: 41733372; PMCID: PMC12981087.
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  3. Putative azithromycin resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discovered. Antimicrob Agents Chemother. 2026 Mar 04; 70(3):e0170825. Sharma P, Dean D, Read TD. PMID: 41586501; PMCID: PMC12959087.
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  4. Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections. NPJ Biofilms Microbiomes. 2025 Dec 13; 11(1):235. Bommana S, Olagoke O, Hu YJ, Wang R, Kama M, Dehdashti M, Kodimerla R, Read TD, Dean D. PMID: 41390780; PMCID: PMC12738766.
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    Translation:HumansCells
  5. Transcriptional profiling of Chlamydia trachomatis and its host in an ex vivo endocervical primary cell culture system using dual RNA sequencing. Front Cell Infect Microbiol. 2025; 15:1613922. Olagoke O, Chittaranjan S, Dean D. PMID: 40599652; PMCID: PMC12209195.
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    Translation:HumansCells
  6. Effect of Azithromycin treatment on the microbial composition, functional dynamics and resistomes of endocervical, vaginal and rectal microbiomes of women in Fiji with Chlamydia trachomatis infection. bioRxiv. 2025 Apr 10. Bommana S, Olagoke S, Hu Y, Wang R, Kama M, Dehdashti M, Kodimerla R, Read T, Dean D. PMID: 40236150; PMCID: PMC11996479.
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  7. Enhanced Chlamydia trachomatis and Neisseria gonorrhoeae Sexually Transmitted Infections and Associated Risk Factors in Fiji Following the Coronavirus Disease 2019 Pandemic. Open Forum Infect Dis. 2025 Mar; 12(3):ofaf101. Auchus IC, Brown J, Kama M, Vargo SG, Devi R, Singh J, Dean D. PMID: 40046883; PMCID: PMC11881064.
    View in: PubMed Mentions: 1
  8. Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline. NAR Genom Bioinform. 2025 03; 7(1):lqae187. Olagoke O, Aziz A, Zhu LH, Read TD, Dean D. PMID: 39781511; PMCID: PMC11704784.
    View in: PubMed Mentions: 1 Fields:
    Translation:HumansCells
  9. Chlamydia suis undergoes interclade recombination promoting Tet-island exchange. BMC Genomics. 2024 Jul 26; 25(1):724. Seth-Smith H, Bommana S, Dean D, Read TD, Marti H. PMID: 39060998; PMCID: PMC11282597.
    View in: PubMed Mentions: 2 Fields:
    Translation:AnimalsCells
  10. Corrigendum: Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis. Front Microbiol. 2024; 15:1441327. Joseph SJ, Bommana S, Ziklo N, Kama M, Dean D, Read TD. PMID: 38983628; PMCID: PMC11231733.
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  11. Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji. mBio. 2024 Jan 16; 15(1):e0306323. Bommana S, Hu Y-J, Kama M, Wang R, Kodimerla R, Jijakli K, Read TD, Dean D. PMID: 38117091; PMCID: PMC10790706.
    View in: PubMed Mentions: 4 Fields:
    Translation:HumansCells
  12. Use of gene sequences as type for naming prokaryotes: Recommendations of the international committee on the taxonomy of chlamydiae. New Microbes New Infect. 2023 Sep; 54:101158. Greub G, Pillonel T, Bavoil PM, Borel N, Campbell LA, Dean D, Hefty S, Horn M, Morré SA, Ouellette SP, Pannekoek Y, Puolakkainen M, Timms P, Valdivia R, Vanrompay D. PMID: 37416863; PMCID: PMC10320375.
    View in: PubMed Mentions: 2
  13. Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis. Front Microbiol. 2023; 14:1154664. Joseph SJ, Bommana S, Ziklo N, Kama M, Dean D, Read TD. PMID: 37056744; PMCID: PMC10086254.
    View in: PubMed Mentions: 4
  14. Chlamydial and gonorrheal neglected sexually transmitted diseases among Pacific Islanders of the Western Pacific Region-A narrative review and call to action. PLoS Negl Trop Dis. 2023 03; 17(3):e0011171. Auchus IC, Kama M, Bhuiyan RA, Brown J, Dean D. PMID: 36928890; PMCID: PMC10019716.
    View in: PubMed Mentions: 2 Fields:
    Translation:HumansCells
  15. Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis. bioRxiv. 2023 Jan 26. Joseph SJ, Bommana S, Ziklo N, Kama M, Dean D, Read TD. PMID: 36747780; PMCID: PMC9901013.
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  16. Multiplex recombinase polymerase amplification for high-risk and low-risk type HPV detection, as potential local use in single tube. Sci Rep. 2023 01 16; 13(1):829. Wongsamart R, Bhattarakasol P, Chaiwongkot A, Wongsawaeng D, Okada PA, Palaga T, Leelahavanichkul A, Khovidhunkit W, Dean D, Somboonna N. PMID: 36646782; PMCID: PMC9841928.
    View in: PubMed Mentions: 4 Fields:
    Translation:HumansCells
  17. Metagenomic Shotgun Sequencing of Endocervical, Vaginal, and Rectal Samples among Fijian Women with and without Chlamydia trachomatis Reveals Disparate Microbial Populations and Function across Anatomic Sites: a Pilot Study. Microbiol Spectr. 2022 06 29; 10(3):e0010522. Bommana S, Richards G, Kama M, Kodimerla R, Jijakli K, Read TD, Dean D. PMID: 35579443; PMCID: PMC9241848.
    View in: PubMed Mentions: 16 Fields:
    Translation:HumansCells
  18. Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants. Front Microbiol. 2021; 12:630293. Marti H, Bommana S, Read TD, Pesch T, Prähauser B, Dean D, Borel N. PMID: 34276577; PMCID: PMC8278220.
    View in: PubMed Mentions: 6
  19. Development and Evaluation of a Point-of-Care Test in a Low-Resource Setting with High Rates of Chlamydia trachomatis Urogenital Infections in Fiji. J Clin Microbiol. 2021 06 18; 59(7):e0018221. Dean D, Swaminathan S, Kama M, Goemans S, Faktaufon D, Alnabelseya N, Spelke D, Kahrizi K, Black M, Mitra D. PMID: 33910964; PMCID: PMC8218753.
    View in: PubMed Mentions: 7 Fields:
    Translation:HumansCells
  20. Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function. mBio. 2021 05 11; 12(3). Bommana S, Somboonna N, Richards G, Tarazkar M, Dean D. PMID: 33975934; PMCID: PMC8262981.
    View in: PubMed Mentions: 6 Fields:
    Translation:HumansCells
  21. Whole-Genome Enrichment and Sequencing of Chlamydia trachomatis Directly from Patient Clinical Vaginal and Rectal Swabs. mSphere. 2021 03 03; 6(2). Bowden KE, Joseph SJ, Cartee JC, Ziklo N, Danavall D, Raphael BH, Read TD, Dean D. PMID: 33658279; PMCID: PMC8546720.
    View in: PubMed Mentions: 13 Fields:
    Translation:HumansCells
  22. Fluorometric Paper-Based, Loop-Mediated Isothermal Amplification Devices for Quantitative Point-of-Care Detection of Methicillin-Resistant Staphylococcus aureus (MRSA). ACS Sens. 2021 03 26; 6(3):742-751. Choopara I, Suea-Ngam A, Teethaisong Y, Howes PD, Schmelcher M, Leelahavanichkul A, Thunyaharn S, Wongsawaeng D, deMello AJ, Dean D, Somboonna N. PMID: 33439634.
    View in: PubMed Mentions: 25 Fields:
    Translation:HumansCells
  23. Chlamydia trachomatis L2c Infection in a Porcine Model Produced Urogenital Pathology and Failed to Induce Protective Immune Responses Against Re-Infection. Front Immunol. 2020; 11:555305. De Clercq E, Van Gils M, Schautteet K, Devriendt B, Kiekens C, Chiers K, Van Den Broeck W, Cox E, Dean D, Vanrompay D. PMID: 33193323; PMCID: PMC7649141.
    View in: PubMed Mentions: 2 Fields:
    Translation:AnimalsCells
  24. Rapid colorimetric loop-mediated isothermal amplification for hypersensitive point-of-care Staphylococcus aureus enterotoxin A gene detection in milk and pork products. Sci Rep. 2020 05 08; 10(1):7768. Srimongkol G, Ditmangklo B, Choopara I, Thaniyavarn J, Dean D, Kokpol S, Vilaivan T, Somboonna N. PMID: 32385390; PMCID: PMC7211006.
    View in: PubMed Mentions: 18 Fields:
    Translation:HumansAnimalsCellsPHPublic Health
  25. Hyperendemic Chlamydia trachomatis sexually transmitted infections among females represent a high burden of asymptomatic disease and health disparity among Pacific Islanders in Fiji. PLoS Negl Trop Dis. 2020 01; 14(1):e0008022. Svigals V, Blair A, Muller S, Sahu Khan A, Faktaufon D, Kama M, Tamani T, Esfandiari L, O'Brien M, Dean D. PMID: 31971951; PMCID: PMC6999915.
    View in: PubMed Mentions: 13 Fields:
    Translation:HumansCellsPHPublic Health
  26. Reply to Rockey et al., "Genomics and Chlamydial Persistence In Vivo". mBio. 2019 12 17; 10(6). Dean D, Ziklo N, Somboonna N, Suh JH, Ferrin T. PMID: 31848290; PMCID: PMC6918091.
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    Translation:Cells
  27. Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon. mBio. 2019 07 16; 10(4). Somboonna N, Ziklo N, Ferrin TE, Hyuk Suh J, Dean D. PMID: 31311884; PMCID: PMC6635532.
    View in: PubMed Mentions: 17 Fields:
    Translation:HumansCells
  28. Stromal Fibroblasts Drive Host Inflammatory Responses That Are Dependent on Chlamydia trachomatis Strain Type and Likely Influence Disease Outcomes. mBio. 2019 03 19; 10(2). Jolly AL, Rau S, Chadha AK, Abdulraheem EA, Dean D. PMID: 30890604; PMCID: PMC6426598.
    View in: PubMed Mentions: 7 Fields:
    Translation:HumansCells
  29. The utility of serology for elimination surveillance of trachoma. Nat Commun. 2018 12 21; 9(1):5444. Pinsent A, Solomon AW, Bailey RL, Bid R, Cama A, Dean D, Goodhew B, Gwyn SE, Jack KR, Kandel RP, Kama M, Massae P, Macleod C, Mabey DCW, Migchelsen S, Müller A, Sandi F, Sokana O, Taoaba R, Tekeraoi R, Martin DL, White MT. PMID: 30575720; PMCID: PMC6303365.
    View in: PubMed Mentions: 40 Fields:
    Translation:HumansCellsPHPublic Health
  30. Rapid and sensitive detection of Chlamydia trachomatis sexually transmitted infections in resource-constrained settings in Thailand at the point-of-care. PLoS Negl Trop Dis. 2018 12; 12(12):e0006900. Somboonna N, Choopara I, Arunrut N, Sukhonpan K, Sayasathid J, Dean D, Kiatpathomchai W. PMID: 30571705; PMCID: PMC6301561.
    View in: PubMed Mentions: 20 Fields:
    Translation:HumansCells
  31. Evaluating the Antibiotic Susceptibility of Chlamydia - New Approaches for in Vitro Assays. Front Microbiol. 2018; 9:1414. Marti H, Borel N, Dean D, Leonard CA. PMID: 30018602; PMCID: PMC6037721.
    View in: PubMed Mentions: 7
  32. Prevalence of Chlamydia trachomatis-Specific Antibodies before and after Mass Drug Administration for Trachoma in Community-Wide Surveys of Four Communities in Nepal. Am J Trop Med Hyg. 2018 01; 98(1):216-220. Gwyn SE, Xiang L, Kandel RP, Dean D, Gambhir M, Martin DL. PMID: 29141720; PMCID: PMC5928690.
    View in: PubMed Mentions: 8 Fields:
    Translation:HumansCellsPHPublic Health
  33. Chlamydia trachomatis regulates growth and development in response to host cell fatty acid availability in the absence of lipid droplets. Cell Microbiol. 2018 02; 20(2). Sharma M, Recuero-Checa MA, Fan FY, Dean D. PMID: 29117636; PMCID: PMC5764794.
    View in: PubMed Mentions: 19 Fields:
    Translation:HumansCells
  34. Chlamydia trachomatis Strain Types Have Diversified Regionally and Globally with Evidence for Recombination across Geographic Divides. Front Microbiol. 2017; 8:2195. Smelov V, Vrbanac A, van Ess EF, Noz MP, Wan R, Eklund C, Morgan T, Shrier LA, Sanders B, Dillner J, de Vries HJC, Morre SA, Dean D. PMID: 29180986; PMCID: PMC5693916.
    View in: PubMed Mentions: 15
  35. Correction: Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. PLoS One. 2017; 12(10):e0186030. Diaz MH, Desai HP, Morrison SS, Benitez AJ, Wolff BJ, Caravas J, Read TD, Dean D, Winchell JM. PMID: 28977025; PMCID: PMC5627953.
    View in: PubMed Mentions: 1 Fields:
  36. Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay. PLoS One. 2017; 12(5):e0178653. Turingan RS, Kaplun L, Krautz-Peterson G, Norsworthy S, Zolotova A, Joseph SJ, Read TD, Dean D, Tan E, Selden RF. PMID: 28562672; PMCID: PMC5451082.
    View in: PubMed Mentions: 8 Fields:
    Translation:Cells
  37. Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. PLoS One. 2017; 12(4):e0174701. Diaz MH, Desai HP, Morrison SS, Benitez AJ, Wolff BJ, Caravas J, Read TD, Dean D, Winchell JM. PMID: 28410368; PMCID: PMC5391922.
    View in: PubMed Mentions: 21 Fields:
    Translation:Cells
  38. Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae. Front Microbiol. 2017; 8:156. Marti H, Kim H, Joseph SJ, Dojiri S, Read TD, Dean D. PMID: 28223970; PMCID: PMC5293829.
    View in: PubMed Mentions: 21
  39. Dynamics of genome change among Legionella species. Sci Rep. 2016 09 16; 6:33442. Joseph SJ, Cox D, Wolff B, Morrison SS, Kozak-Muiznieks NA, Frace M, Didelot X, Castillo-Ramirez S, Winchell J, Read TD, Dean D. PMID: 27633769; PMCID: PMC5025774.
    View in: PubMed Mentions: 19 Fields:
    Translation:Cells
  40. Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen. Genome Biol Evol. 2016 09 02; 8(8):2613-23. Joseph SJ, Marti H, Didelot X, Read TD, Dean D. PMID: 27576537; PMCID: PMC5010913.
    View in: PubMed Mentions: 26 Fields:
    Translation:Cells
  41. Lateral flow-based antibody testing for Chlamydia trachomatis. J Immunol Methods. 2016 08; 435:27-31. Gwyn S, Mitchell A, Dean D, Mkocha H, Handali S, Martin DL. PMID: 27208400.
    View in: PubMed Mentions: 23 Fields:
    Translation:HumansCells
  42. Chlamydia trachomatis growth and development requires the activity of host Long-chain Acyl-CoA Synthetases (ACSLs). Sci Rep. 2016 Mar 18; 6:23148. Recuero-Checa MA, Sharma M, Lau C, Watkins PA, Gaydos CA, Dean D. PMID: 26988341; PMCID: PMC4796813.
    View in: PubMed Mentions: 21 Fields:
    Translation:HumansCells
  43. A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells. Cell Rep. 2016 Jan 26; 14(3):611-620. Jolly AL, Luan CH, Dusel BE, Dunne SF, Winding M, Dixit VJ, Robins C, Saluk JL, Logan DJ, Carpenter AE, Sharma M, Dean D, Cohen AR, Gelfand VI. PMID: 26774481; PMCID: PMC4868501.
    View in: PubMed Mentions: 4 Fields:
    Translation:AnimalsCells
  44. Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans. Genome Biol Evol. 2015 Oct 27; 7(11):3070-84. Joseph SJ, Marti H, Didelot X, Castillo-Ramirez S, Read TD, Dean D. PMID: 26507799; PMCID: PMC4994753.
    View in: PubMed Mentions: 22 Fields:
    Translation:HumansAnimalsCells
  45. Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes. Microbiology (Reading). 2015 Jul; 161(7):1378-91. Wolff BJ, Morrison SS, Pesti D, Ganakammal SR, Srinivasamoorthy G, Changayil S, Weil MR, MacCannell D, Rowe L, Frace M, Ritchie BW, Dean D, Winchell JM. PMID: 25887617; PMCID: PMC4635502.
    View in: PubMed Mentions: 16 Fields:
    Translation:Cells
  46. Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance. PeerJ. 2015; 3:e806. Ezewudo MN, Joseph SJ, Castillo-Ramirez S, Dean D, Del Rio C, Didelot X, Dillon JA, Selden RF, Shafer WM, Turingan RS, Unemo M, Read TD. PMID: 25780762; PMCID: PMC4358642.
    View in: PubMed Mentions: 51 Fields:
  47. Novel Chlamydia trachomatis strains in heterosexual sex partners, Indianapolis, Indiana, USA. Emerg Infect Dis. 2014 Nov; 20(11):1841-7. Batteiger BE, Wan R, Williams JA, He L, Ma A, Fortenberry JD, Dean D. PMID: 25340463; PMCID: PMC4214310.
    View in: PubMed Mentions: 9 Fields:
    Translation:HumansCells
  48. Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. PLoS One. 2014; 9(6):e99290. Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD. PMID: 24971628; PMCID: PMC4074039.
    View in: PubMed Mentions: 14 Fields:
    Translation:HumansCells
  49. TRAIL-R1 is a negative regulator of pro-inflammatory responses and modulates long-term sequelae resulting from Chlamydia trachomatis infections in humans. PLoS One. 2014; 9(4):e93939. Al-Kuhlani M, Rothschild J, Rothchild J, Pal S, de la Maza LM, Ouburg S, Morré SA, Dean D, Ojcius DM. PMID: 24695582; PMCID: PMC3973638.
    View in: PubMed Mentions: 8 Fields:
    Translation:HumansAnimalsCells
  50. Zoonotic Chlamydiaceae species associated with trachoma, Nepal. Emerg Infect Dis. 2013 Dec; 19(12):1948-55. Dean D, Rothschild J, Ruettger A, Kandel RP, Sachse K. PMID: 24274654; PMCID: PMC3840858.
    View in: PubMed Mentions: 46 Fields:
    Translation:HumansCells
  51. Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range. mBio. 2013 Mar 26; 4(2). Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D. PMID: 23532978; PMCID: PMC3622922.
    View in: PubMed Mentions: 52 Fields:
    Translation:HumansAnimalsCells
  52. Analyzing microsatellites using the QIAxcel system. Methods Mol Biol. 2013; 1006:223-43. Dean DA, Wadl PA, Hadziabdic D, Wang X, Trigiano RN. PMID: 23546795.
    View in: PubMed Mentions: 11 Fields:
    Translation:HumansAnimalsCells
  53. Transcription factor complex AP-1 mediates inflammation initiated by Chlamydia pneumoniae infection. Cell Microbiol. 2013 May; 15(5):779-94. Wang A, Al-Kuhlani M, Johnston SC, Ojcius DM, Chou J, Dean D. PMID: 23163821; PMCID: PMC3593943.
    View in: PubMed Mentions: 45 Fields:
    Translation:HumansCells
  54. A multiplexed microfluidic PCR assay for sensitive and specific point-of-care detection of Chlamydia trachomatis. PLoS One. 2012; 7(12):e51685. Dean D, Turingan RS, Thomann HU, Zolotova A, Rothschild J, Joseph SJ, Read TD, Tan E, Selden RF. PMID: 23272140; PMCID: PMC3522697.
    View in: PubMed Mentions: 11 Fields:
    Translation:HumansCells
  55. Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure. Mol Biol Evol. 2012 Dec; 29(12):3933-46. Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D. PMID: 22891032; PMCID: PMC3494276.
    View in: PubMed Mentions: 58 Fields:
    Translation:Cells
  56. Eukaryotic protein recruitment into the Chlamydia inclusion: implications for survival and growth. PLoS One. 2012; 7(5):e36843. Soupene E, Rothschild J, Kuypers FA, Dean D. PMID: 22590624; PMCID: PMC3348897.
    View in: PubMed Mentions: 15 Fields:
    Translation:HumansCells
  57. Engineered phage-based therapeutic materials inhibit Chlamydia trachomatis intracellular infection. Biomaterials. 2012 Jul; 33(20):5166-74. Bhattarai SR, Yoo SY, Lee SW, Dean D. PMID: 22494890; PMCID: PMC3341514.
    View in: PubMed Mentions: 28 Fields:
    Translation:HumansCells
  58. Ten polymorphic microsatellite loci identified from a small insert genomic library for Peronospora tabacina. Mycologia. 2012 May-Jun; 104(3):633-40. Trigiano RN, Wadl PA, Dean D, Hadziabdic D, Scheffler BE, Runge F, Telle S, Thines M, Ristaino J, Spring O. PMID: 22241615.
    View in: PubMed Mentions: 1 Fields:
    Translation:AnimalsCells
  59. In vitro recombinants of antibiotic-resistant Chlamydia trachomatis strains have statistically more breakpoints than clinical recombinants for the same sequenced loci and exhibit selection at unexpected loci. J Bacteriol. 2012 Feb; 194(3):617-26. Srinivasan T, Bruno WJ, Wan R, Yen A, Duong J, Dean D. PMID: 22123249; PMCID: PMC3264063.
    View in: PubMed Mentions: 9 Fields:
    Translation:HumansCells
  60. Interplay of recombination and selection in the genomes of Chlamydia trachomatis. Biol Direct. 2011 May 26; 6:28. Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD. PMID: 21615910; PMCID: PMC3126793.
    View in: PubMed Mentions: 51 Fields:
    Translation:Cells
  61. Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages. mBio. 2011; 2(3):e00045-11. Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D. PMID: 21540364; PMCID: PMC3088116.
    View in: PubMed Mentions: 58 Fields:
    Translation:HumansCells
  62. Association of carotid plaque Lp-PLA(2) with macrophages and Chlamydia pneumoniae infection among patients at risk for stroke. PLoS One. 2010 Jun 09; 5(6):e11026. Atik B, Johnston SC, Dean D. PMID: 20543948; PMCID: PMC2882946.
    View in: PubMed Mentions: 12 Fields:
    Translation:HumansCells
  63. Characterization of humoral immune responses to chlamydial HSP60, CPAF, and CT795 in inflammatory and severe trachoma. Invest Ophthalmol Vis Sci. 2010 Oct; 51(10):5128-36. Skwor T, Kandel RP, Basravi S, Khan A, Sharma B, Dean D. PMID: 20463311; PMCID: PMC3066612.
    View in: PubMed Mentions: 18 Fields:
    Translation:HumansCells
  64. A systemic network for Chlamydia pneumoniae entry into human cells. J Bacteriol. 2010 Jun; 192(11):2809-15. Wang A, Johnston SC, Chou J, Dean D. PMID: 20233927; PMCID: PMC2876499.
    View in: PubMed Mentions: 16 Fields:
    Translation:HumansCells
  65. Predicting phenotype and emerging strains among Chlamydia trachomatis infections. Emerg Infect Dis. 2009 Sep; 15(9):1385-94. Dean D, Bruno WJ, Wan R, Gomes JP, Devignot S, Mehari T, de Vries HJ, Morré SA, Myers G, Read TD, Spratt BG. PMID: 19788805; PMCID: PMC2819883.
    View in: PubMed Mentions: 51 Fields:
    Translation:HumansCells
  66. Chlamydia trachomatis-infected patients display variable antibody profiles against the nine-member polymorphic membrane protein family. Infect Immun. 2009 Aug; 77(8):3218-26. Tan C, Hsia RC, Shou H, Haggerty CL, Ness RB, Gaydos CA, Dean D, Scurlock AM, Wilson DP, Bavoil PM. PMID: 19487469; PMCID: PMC2715660.
    View in: PubMed Mentions: 48 Fields:
    Translation:HumansCells
  67. Identification of novel single nucleotide polymorphisms in inflammatory genes as risk factors associated with trachomatous trichiasis. PLoS One. 2008; 3(10):e3600. Atik B, Skwor TA, Kandel RP, Sharma B, Adhikari HK, Steiner L, Erlich H, Dean D. PMID: 18974840; PMCID: PMC2572999.
    View in: PubMed Mentions: 11 Fields:
    Translation:HumansCells
  68. Role of secreted conjunctival mucosal cytokine and chemokine proteins in different stages of trachomatous disease. PLoS Negl Trop Dis. 2008 Jul 16; 2(7):e264. Skwor TA, Atik B, Kandel RP, Adhikari HK, Sharma B, Dean D. PMID: 18628987; PMCID: PMC2442224.
    View in: PubMed Mentions: 26 Fields:
  69. Discovering and differentiating new and emerging clonal populations of Chlamydia trachomatis with a novel shotgun cell culture harvest assay. Emerg Infect Dis. 2008 Mar; 14(3):445-53. Somboonna N, Mead S, Liu J, Dean D. PMID: 18325260; PMCID: PMC2570839.
    View in: PubMed Mentions: 18 Fields:
    Translation:Cells
  70. Multiple Chlamydiaceae species in trachoma: implications for disease pathogenesis and control. PLoS Med. 2008 Jan 03; 5(1):e14. Dean D, Kandel RP, Adhikari HK, Hessel T. PMID: 18177205; PMCID: PMC2174965.
    View in: PubMed Mentions: 38 Fields:
    Translation:HumansCellsPHPublic Health
  71. Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains. PLoS One. 2007 Sep 12; 2(9):e878. Nunes A, Gomes JP, Mead S, Florindo C, Correia H, Borrego MJ, Dean D. PMID: 17849007; PMCID: PMC1963315.
    View in: PubMed Mentions: 28 Fields:
    Translation:Cells
  72. Evaluating the "A" component of the SAFE strategy. Lancet Infect Dis. 2007 Jan; 7(1):2-3. Dean D, Atik B, Ton TK, Vu QL, Lagree S. PMID: 17182334.
    View in: PubMed Mentions: Fields:
    Translation:HumansPHPublic Health
  73. Genomic plasticity of the rrn-nqrF intergenic segment in the Chlamydiaceae. J Bacteriol. 2007 Mar; 189(5):2128-32. Liu Z, Rank R, Kaltenboeck B, Magnino S, Dean D, Burall L, Plaut RD, Read TD, Myers G, Bavoil PM. PMID: 17158668; PMCID: PMC1855709.
    View in: PubMed Mentions: 5 Fields:
    Translation:Cells
  74. Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots. Genome Res. 2007 Jan; 17(1):50-60. Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D. PMID: 17090662; PMCID: PMC1716266.
    View in: PubMed Mentions: 82 Fields:
    Translation:HumansCells
  75. Impact of annual targeted treatment on infectious trachoma and susceptibility to reinfection. JAMA. 2006 Sep 27; 296(12):1488-97. Atik B, Thanh TT, Luong VQ, Lagree S, Dean D. PMID: 17003397.
    View in: PubMed Mentions: 31 Fields:
    Translation:HumansCTClinical Trials
  76. Population-based genetic epidemiologic analysis of Chlamydia trachomatis serotypes and lack of association between ompA polymorphisms and clinical phenotypes. Microbes Infect. 2006 Mar; 8(3):604-11. Millman K, Black CM, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. PMID: 16527508.
    View in: PubMed Mentions: 20 Fields:
    Translation:HumansCells
  77. Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism. J Bacteriol. 2006 Jan; 188(1):275-86. Gomes JP, Nunes A, Bruno WJ, Borrego MJ, Florindo C, Dean D. PMID: 16352844; PMCID: PMC1317584.
    View in: PubMed Mentions: 80 Fields:
    Translation:HumansCells
  78. Chlamydia pneumoniae burden in carotid arteries is associated with upregulation of plaque interleukin-6 and elevated C-reactive protein in serum. Arterioscler Thromb Vasc Biol. 2005 Dec; 25(12):2648-53. Johnston SC, Zhang H, Messina LM, Lawton MT, Dean D. PMID: 16210572.
    View in: PubMed Mentions: 10 Fields:
    Translation:HumansCells
  79. Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis. Microbes Infect. 2006 Jan; 8(1):16-26. Gomes JP, Borrego MJ, Atik B, Santo I, Azevedo J, Brito de Sá A, Nogueira P, Dean D. PMID: 16289001.
    View in: PubMed Mentions: 32 Fields:
    Translation:HumansCells
  80. Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups. Microbes Infect. 2005 Mar; 7(3):410-20. Gomes JP, Hsia RC, Mead S, Borrego MJ, Dean D. PMID: 15784185.
    View in: PubMed Mentions: 26 Fields:
    Translation:HumansAnimalsCells
  81. Recombination in the genome of Chlamydia trachomatis involving the polymorphic membrane protein C gene relative to ompA and evidence for horizontal gene transfer. J Bacteriol. 2004 Jul; 186(13):4295-306. Gomes JP, Bruno WJ, Borrego MJ, Dean D. PMID: 15205432; PMCID: PMC421610.
    View in: PubMed Mentions: 46 Fields:
    Translation:Cells
  82. Risk factors for recurrence of postoperative trichiasis: implications for trachoma blindness prevention. Arch Ophthalmol. 2004 Apr; 122(4):511-6. Zhang H, Kandel RP, Sharma B, Dean D. PMID: 15078668.
    View in: PubMed Mentions: 27 Fields:
    Translation:HumansCells
  83. Population-based genetic and evolutionary analysis of Chlamydia trachomatis urogenital strain variation in the United States. J Bacteriol. 2004 Apr; 186(8):2457-65. Millman K, Black CM, Johnson RE, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. PMID: 15060049; PMCID: PMC412158.
    View in: PubMed Mentions: 50 Fields:
    Translation:HumansCells
  84. Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women. Am J Obstet Gynecol. 2004 Mar; 190(3):654-62. Shrier LA, Dean D, Klein E, Harter K, Rice PA. PMID: 15041995.
    View in: PubMed Mentions: 5 Fields:
    Translation:HumansCellsCTClinical Trials
  85. Modeling the economic net benefit of a potential vaccination program against ocular infection with Chlamydia trachomatis. Vaccine. 2004 Jan 26; 22(5-6):689-96. Frick KD, Colchero MA, Dean D. PMID: 14741161.
    View in: PubMed Mentions: 5 Fields:
    Translation:HumansCells
  86. Chlamydia pneumoniae and acute chest syndrome in patients with sickle cell disease. J Pediatr Hematol Oncol. 2003 Jan; 25(1):46-55. Dean D, Neumayr L, Kelly DM, Ballas SK, Kleman K, Robertson S, Iyer RV, Ware RE, Koshy M, Rackoff WR, Pegelow CH, Waldron P, Benjamin L, Vichinsky E, Acute Chest Syndrome Study Group. PMID: 12544773.
    View in: PubMed Mentions: 18 Fields:
    Translation:HumansCells

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