Tomiko Oskotsky • UCSF Profiles (original) (raw)
- The Human Intolerome: a curated database to prioritize genomic variants in stillbirth, pregnancy loss, and neonatal death. Genet Med. 2026 Mar 03; 102546. Yatsenko SA, Nagasuri A, Soman V, Garakani A, Aminbeidokhti M, Chandran U, Aarabi M, Oskotsky T, Bukhari SH, Hypes C, Gu Z, Monteiro R, Smith S, Walters B, Snyder MP, Tise CG, Bernstein JA, Shaw GM, Stevenson DK, Lathi RB, Sirota M, Rajkovic A. PMID: 41793222.
View in: PubMed Mentions: - Social and Cardiovascular Risk Factors as Predictors of the Progression from Mild Cognitive Impairment to Dementia in a Large EHR Database. medRxiv. 2026 Mar 03. Miramontes S, Ferguson EL, Zimmerman S, Phelps E, Oskotsky B, Oskotsky TT, Capra JA, Tsoy E, Sirota M, Glymour MM. PMID: 41822695; PMCID: PMC12976900.
View in: PubMed Mentions: - Benchmarking large language models for predictive modeling in biomedical research with a focus on reproductive health. Cell Rep Med. 2026 Feb 17; 7(2):102594. Sarwal R, Tarca V, Dubin CA, Kalavros N, Bhatti G, Bhattacharya S, Butte A, Romero R, Stolovitzky G, Oskotsky TT, Tarca AL, Sirota M. PMID: 41707656; PMCID: PMC12923944.
View in: PubMed Mentions: Fields:
Translation:HumansCells - Leveraging health records to identify diagnoses associated with recurrent pregnancy loss across two medical centers. iScience. 2026 Feb 20; 29(2):114633. Roger J, Xie F, Costello JM, Tang AS, Liu J, Oskotsky TT, Woldemariam SR, Kosti I, Le BL, Snyder MP, Giudice LC, Shaw GM, Stevenson DK, Rajkovic A, Glymour MM, Torgerson D, Aghaeepour N, Cakmak H, Lathi RB, Sirota M. PMID: 41660242; PMCID: PMC12877842.
View in: PubMed Mentions: - Compression-Enabled Joint Entropy Estimation for Seizure Detection on Human Intracortical Electroencephalography. IEEE Trans Biomed Eng. 2025 Dec; 72(12):3440-3452. Yamada L, Oskotsky T, Nuyujukian P. PMID: 41231686.
View in: PubMed Mentions: - Characterizing Dementia Phenotypes from Unstructured EHR Notes with Generative AI and Interpretable Machine Learning. medRxiv. 2025 Nov 07. Tang AS, Zeng BZD, Rankin KP, Miller B, Gorno-Tempini ML, Seeley WW, Rosen HJ, Rabinovici GD, Oskotsky TT, Sirota M, Pinheiro-Chagas P. PMID: 41256136; PMCID: PMC12622152.
View in: PubMed Mentions: - Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research. Cell Rep Med. 2025 Dec 16; 6(12):102428. Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Chai R, Dubin C, Parraga-Leo A, Wibrand C, Minot SS, Oskotsky B, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Wang Z, Yao J, Goel A, Mao J, Wang H, Zhang Y, Tewari A, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S, Preterm Birth DREAM Community, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. PMID: 41205590; PMCID: PMC12765831.
View in: PubMed Mentions: Fields: - Transcriptomic comparison of early onset preeclampsia and placenta accreta identifies inverse trophoblast and decidua functions at the maternal-fetal interface. NPJ Womens Health. 2025; 3(1):59. Yin O, Almonte-Loya A, Appierdo R, Yang M, Yilmaz BD, Oskotsky TT, Gonzalez-Velez JM, Giudice LC, Afshar Y, Sirota M. PMID: 41141914; PMCID: PMC12549338.
View in: PubMed Mentions: - Mapping Chemical-Gene Interactions for Developmental Lethality and Pregnancy Loss. medRxiv. 2025 Oct 07. Bukhari SH, Nagasuri A, Oskotsky B, Arnaout L, Minkovski P, Correia GDS, MacIntyre DA, Shaw GM, Stevenson DK, Lathi RB, Yatsenko SA, Oskotsky TT, Rajkovic A, Sirota M. PMID: 41282918; PMCID: PMC12632689.
View in: PubMed Mentions: - Mondo: Integrating Disease Terminology Across Communities. Genetics. 2025 Oct 06. Vasilevsky NA, Toro S, Matentzoglu N, Flack JE, Mullen KR, Hegde H, Gehrke S, Whetzel PL, Shwetar Y, Harris NL, Ngu MS, Alyea GL, Kane MS, Roncaglia P, Sid E, Thaxton CL, Wood V, Abraham RS, Achatz MI, Ajuyah P, Amberger JS, Babb L, Baker J, Balhoff JP, Berg JS, Bhalla A, Bofill-De Ros X, Braun IR, Broeren EC, Byer BK, Byrne AB, Callahan TJ, Carmody LC, Chan LE, Clause AR, Cohen JS, DeLuca M, Deuitch NT, Flowers M, Fraser J, Fujiwara T, Gitau V, Goldstein JL, Gration D, Groza T, Gyori BM, Hankey W, Hilton JA, Himmelstein DS, Hong SS, Hoyt CT, Huether R, Hurwitz E, Jacobsen JOB, Kikuchi A, Köhler S, Korn DR, Lagorce D, Laraway BJ, Li JY, Malheiro AJ, McLaughlin J, Meldal BHM, Mohan S, Moxon SAT, Munoz-Torres MC, Nelson TH, Nicholas FW, Ochoa D, Olson D, Oprea TI, Oskotsky TT, Osumi-Sutherland D, Paris K, Parkinson HE, Pendlington ZM, Peng XP, Pizzino A, Plon SE, Powell BC, Ratliff JC, Rehm HL, Remennik L, Riggs ER, Roberts S, Robinson PN, Ross JE, Schaper K, Schilder BM, Schmidt JL, Sharp EW, Similuk MN, Smedley D, Sneddon TP, Sparks R, Stefancsik R, Stupp GS, Sundar S, Takatsuki T, Tammen I, Tshering KC, Unni DR, Valasek E, Vanderver A, Wagner AH, Webb RF, Welter D, Yaya-Stupp D, Zankl A, Zhang XA, McMurry JA, Chute CG, Hamosh A, Mungall CJ, Haendel MA. PMID: 41052288.
View in: PubMed Mentions: - Single-cell-level digital twins for preterm birth prevention strategies. bioRxiv. 2025 Oct 01. Einhaus J, Neidlinger P, Fondeur O, Sato M, Anronikov A, Miyazaki K, Amar JN, Ando K, Badea V, Gaudilliere DK, Sabayev M, Feyaerts D, Diop M, Tsai AS, Cambriel A, Ganio EA, Lagarde R, O'Kelly E, Stelzer IA, Hedou J, Wong RJ, Blumenfeld YJ, Lyell DJ, Shaw GM, Oskotsky TT, Sirota M, Giudice L, Stevenson DK, Aghaeepour N, Gaudilliere B. PMID: 41256687; PMCID: PMC12621756.
View in: PubMed Mentions: - Delirium in hospitalized COVID-19 patients is associated with dynamic changes in peripheral immune gene expression. Geroscience. 2025 Sep 22. LaHue SC, Takegami N, Simmasalam R, Baqai A, Munoz E, Sikri A, de Courson TDB, Singhal NS, Eckalbar W, Langelier CR, Hendrickson CM, Calfee CS, Erle DJ, Krummel MF, Woodruff PG, Oskotsky T, Sirota M, Ferguson A, Douglas VC, Newman JC, Pleasure SJ, Wilson MR, Singhal NS. PMID: 40982210.
View in: PubMed Mentions: Fields: - Decoding subphenotypes in electronic medical records within late-onset Alzheimer's disease reveals heterogeneity and sex-specific differences. medRxiv. 2025 Sep 08. Katsuhara Y, Khan U, Miller ZA, Allen IE, Oskotsky TT, Sirota M, Tang AS. PMID: 40313288; PMCID: PMC12045436.
View in: PubMed Mentions: - Leveraging electronic health records from two hospital systems identifies male infertility-associated comorbidities across time. Commun Med (Lond). 2025 Sep 01; 5(1):380. Woldemariam SR, Xie F, Roldan A, Roger J, Tang AS, Oskotsky TT, Stevenson DK, Lathi RB, Rajkovic A, Allen IE, Aghaeepour N, Eisenberg M, Sirota M. PMID: 40890520; PMCID: PMC12402078.
View in: PubMed Mentions: 1 - Anticlustering for sample allocation to minimize batch effects. Cell Rep Methods. 2025 Aug 18; 5(8):101137. Papenberg M, Wang C, Diop M, Bukhari SH, Oskotsky B, Davidson BR, Vo KC, Liu B, Irwin JC, Combes AJ, Gaudilliere B, Li J, Stevenson DK, Klau GW, Giudice LC, Sirota M, Oskotsky TT. PMID: 40829575; PMCID: PMC12461633.
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Translation:Humans - Single-Cell Profiling Reveals Altered Endometrial Cellular Features Across the Menstrual Cycle in Endometriosis Patients. bioRxiv. 2025 Aug 14. Almonte-Loya A, Wang W, Houshdaran S, Tang X, Flynn E, Liu B, Kushnoor D, Nezhat C, Vilella F, Simon C, Vo KC, Casillas A, Khan U, Serras CP, Oskotsky TT, Huang D, Vallve-Juanico J, Irwin J, Combes A, Sirota M, Fragiadakis G, Giudice L. PMID: 40777241; PMCID: PMC12330773.
View in: PubMed Mentions: - Comorbidity analysis and clustering of endometriosis patients using electronic health records. Cell Rep Med. 2025 Aug 19; 6(8):102245. Khan U, Oskotsky TT, Yilmaz BD, Roger J, Gjoni K, Irwin JC, Opoku-Anane J, Elhadad N, Giudice LC, Sirota M. PMID: 40749680; PMCID: PMC12432376.
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Translation:Humans - Comorbidities associated with a clinically-recognized delirium diagnosis in the hospital using real world data. Commun Med (Lond). 2025 Jul 22; 5(1):304. Kodama L, Woldemariam SR, Tang AS, Li Y, Kornak J, Allen IE, Raphael E, Oskotsky TT, Sirota M. PMID: 40696117; PMCID: PMC12284072.
View in: PubMed Mentions: 1 - Cell-type-directed network-correcting combination therapy for Alzheimer's disease. Cell. 2025 Oct 02; 188(20):5516-5534.e18. Li Y, Pereda Serras C, Blumenfeld J, Xie M, Hao Y, Deng E, Chun YY, Holtzman J, An A, Yoon SY, Tang X, Rao A, Woldemariam S, Tang A, Zhang A, Simms J, Lo I, Oskotsky T, Keiser MJ, Huang Y, Sirota M. PMID: 40695276; PMCID: PMC12313259.
View in: PubMed Mentions: 1 Fields: - Diagnostic Reversion in Dementia Care: A Real-World Analysis of Mild Cognitive Impairment Diagnoses Following Dementia in a Large Electronic Medical Record System. medRxiv. 2025 Jul 17. Miramontes S, Khan U, Zimmerman S, Ferguson EL, Mills H, Oskotsky B, Phelps E, Oskotsky TT, Capra AJ, Glymour MM, Sirota M, Tsoy E. PMID: 40791721; PMCID: PMC12338929.
View in: PubMed Mentions: - InSight: AI Mobile Screening Tool for Multiple Eye Disease Detection using Multimodal Fusion. arXiv. 2025; (2507.12669). Raghu Ananya, Raghu Anisha, Tang AS, Paulus YM, Kim TN, Oskotsky TT. View Publication.
- Benchmarking Large Language Models for Predictive Modeling in Biomedical Research With a Focus on Reproductive Health. bioRxiv. 2025 Jul 10. Sarwal R, Tarca V, Dubin C, Kalavros N, Bhatti G, Bhattacharya S, Butte A, Romero R, Stolovitzky G, Oskotsky TT, Tarca AL, Sirota M. PMID: 40747416; PMCID: PMC12312170.
View in: PubMed Mentions: - A Transcriptomics-Based Computational Drug Repositioning Pipeline Identifies Simvastatin And Primaquine As Novel Therapeutics For Endometriosis Pain. bioRxiv. 2025 May 30. Oskotsky TT, Tang X, Arthurs E, Govil A, Abbasi F, Bhoja A, Bunis DJ, Lau A, Einhaus J, Diop M, Irwin JC, Gaudilliere B, Stevenson DK, Giudice LC, McAllister SL, Sirota M. PMID: 40502156; PMCID: PMC12154721.
View in: PubMed Mentions: - AI-guided precision parenteral nutrition for neonatal intensive care units. Nat Med. 2025 Jun; 31(6):1882-1894. Phongpreecha T, Ghanem M, Reiss JD, Oskotsky TT, Mataraso SJ, De Francesco D, Reincke SM, Espinosa C, Chung P, Ng T, Costello JM, Sequoia JA, Razdan S, Xie F, Berson E, Kim Y, Seong D, Szeto MY, Myers F, Gu H, Feister J, Verscaj CP, Rose LA, Sin LWY, Oskotsky B, Roger J, Shu CH, Shome S, Yang LK, Tan Y, Levitte S, Wong RJ, Gaudillière B, Angst MS, Montine TJ, Kerner JA, Keller RL, Shaw GM, Sylvester KG, Fuerch J, Chock V, Gaskari S, Stevenson DK, Sirota M, Prince LS, Aghaeepour N. PMID: 40133525; PMCID: PMC12176641.
View in: PubMed Mentions: Fields:
Translation:Humans - Exposure to autoimmune disorders is associated with increased Alzheimer's disease risk in a multi-site electronic health record analysis. Cell Rep Med. 2025 Mar 18; 6(3):101980. Ramey GD, Tang A, Phongpreecha T, Yang MM, Woldemariam SR, Oskotsky TT, Montine TJ, Allen I, Miller ZA, Aghaeepour N, Capra JA, Sirota M. PMID: 39999839; PMCID: PMC11970322.
View in: PubMed Mentions: 2 Fields:
Translation:Humans - Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium. medRxiv. 2025 Feb 20. LaHue SC, Takegami N, Simmasalam R, Baqai A, Munoz E, Sikri A, de Courson TDB, Singhal NS, Eckalbar W, Langelier CR, Hendrickson CM, Calfee CS, Erle DJ, Krummel MF, Woodruff PG, Oskotsky T, Sirota M, Ferguson A, Douglas VC, Newman JC, Pleasure SJ, Wilson MR, COMET consortium, Singhal NS. PMID: 40034792; PMCID: PMC11875240.
View in: PubMed Mentions: - Pre-conception clinical risk factors differ between spontaneous and indicated preterm birth in a densely phenotyped EHR cohort. BMC Pregnancy Childbirth. 2025 Feb 12; 25(1):149. Costello JM, Takasuka H, Roger J, Yin O, Tang A, Oskotsky T, Sirota M, Capra JA. PMID: 39939846; PMCID: PMC11817080.
View in: PubMed Mentions: 4 Fields:
Translation:Humans - Real world perspectives on endometriosis disease phenotyping through surgery, omics, health data, and artificial intelligence. NPJ Womens Health. 2025; 3(1):8. Nezhat CR, Oskotsky TT, Robinson JF, Fisher SJ, Tsuei A, Liu B, Irwin JC, Gaudilliere B, Sirota M, Stevenson DK, Giudice LC. PMID: 39926583; PMCID: PMC11802455.
View in: PubMed Mentions: 9 - VMAP: Vaginal Microbiome Atlas during Pregnancy. JAMIA Open. 2024 Oct; 7(3):ooae099. Parraga-Leo A, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang AS, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob JL, Sirota M. PMID: 39345789; PMCID: PMC11430916.
View in: PubMed Mentions: 1 - Harnessing EHR data for health research. Nat Med. 2024 Jul; 30(7):1847-1855. Tang AS, Woldemariam SR, Miramontes S, Norgeot B, Oskotsky TT, Sirota M. PMID: 38965433.
View in: PubMed Mentions: 20 Fields:
Translation:Humans - A scalable platform for acquisition of high-fidelity human intracranial EEG with minimal clinical burden. PLoS One. 2024; 19(6):e0305009. Yamada L, Oskotsky T, Nuyujukian P, Stanford Comprehensive Epilepsy Center, Stanford Pediatric Epilepsy Center. PMID: 38870212; PMCID: PMC11175507.
View in: PubMed Mentions: Fields:
Translation:Humans - Alzheimer's disease as a women's health challenge: a call for action on integrative precision medicine approaches. NPJ Womens Health. 2024; 2(1):17. Miramontes S, Pereda Serras C, Woldemariam SR, Khan U, Li Y, Tang AS, Tsoy E, Oskotsky TT, Sirota M. PMID: 38778871; PMCID: PMC11106001.
View in: PubMed Mentions: 3 - Data-driven insights can transform women's reproductive health. NPJ Womens Health. 2024; 2(1):14. Oskotsky TT, Yin O, Khan U, Arnaout L, Sirota M. PMID: 38770215; PMCID: PMC11104016.
View in: PubMed Mentions: 2 - Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach. iScience. 2024 Apr 19; 27(4):109388. Oskotsky TT, Bhoja A, Bunis D, Le BL, Tang AS, Kosti I, Li C, Houshdaran S, Sen S, Vallvé-Juanico J, Wang W, Arthurs E, Govil A, Mahoney L, Lang L, Gaudilliere B, Stevenson DK, Irwin JC, Giudice LC, McAllister SL, Sirota M. PMID: 38510116; PMCID: PMC10952035.
View in: PubMed Mentions: 8 - Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights. Nat Aging. 2024 Mar; 4(3):379-395. Tang AS, Rankin KP, Cerono G, Miramontes S, Mills H, Roger J, Zeng B, Nelson C, Soman K, Woldemariam S, Li Y, Lee A, Bove R, Glymour M, Aghaeepour N, Oskotsky TT, Miller Z, Allen IE, Sanders SJ, Baranzini S, Sirota M. PMID: 38383858; PMCID: PMC10950787.
View in: PubMed Mentions: 30 Fields:
Translation:Humans - Discovery of sparse, reliable omic biomarkers with Stabl. Nat Biotechnol. 2024 Oct; 42(10):1581-1593. Hédou J, Maric I, Bellan G, Einhaus J, Gaudillière DK, Ladant FX, Verdonk F, Stelzer IA, Feyaerts D, Tsai AS, Ganio EA, Sabayev M, Gillard J, Amar J, Cambriel A, Oskotsky TT, Roldan A, Golob JL, Sirota M, Bonham TA, Sato M, Diop M, Durand X, Angst MS, Stevenson DK, Aghaeepour N, Montanari A, Gaudillière B. PMID: 38168992; PMCID: PMC11217152.
View in: PubMed Mentions: 32 Fields:
Translation:Humans - Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research. Cell Rep Med. 2024 01 16; 5(1):101350. Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Parraga-Leo A, Wibrand C, Minot SS, Oskotsky B, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S, Preterm Birth DREAM Community, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. PMID: 38134931; PMCID: PMC10829755.
View in: PubMed Mentions: 28 Fields:
Translation:Humans - MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies. Cell Rep Methods. 2023 11 20; 3(11):100639. Minot SS, Garb B, Roldan A, Tang AS, Oskotsky TT, Rosenthal C, Hoffman NG, Sirota M, Golob JL. PMID: 37939711; PMCID: PMC10694490.
View in: PubMed Mentions: 6 Fields: - Endometriosis in the era of precision medicine and impact on sexual and reproductive health across the lifespan and in diverse populations. FASEB J. 2023 09; 37(9):e23130. Giudice LC, Oskotsky TT, Falako S, Opoku-Anane J, Sirota M. PMID: 37641572; PMCID: PMC10503213.
View in: PubMed Mentions: 35 Fields:
Translation:Humans - Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients. PLoS Comput Biol. 2023 05; 19(5):e1011050. Sperry MM, Oskotsky TT, Maric I, Kaushal S, Takeda T, Horvath V, Powers RK, Rodas M, Furlong B, Soong M, Prabhala P, Goyal G, Carlson KE, Wong RJ, Kosti I, Le BL, Logue J, Hammond H, Frieman M, Stevenson DK, Ingber DE, Sirota M, Novak R. PMID: 37146076; PMCID: PMC10191356.
View in: PubMed Mentions: 8 Fields:
Translation:HumansCells - Similarities and differences in Alzheimer's dementia comorbidities in racialized populations identified from electronic medical records. Commun Med (Lond). 2023 Apr 08; 3(1):50. Woldemariam SR, Tang AS, Oskotsky TT, Yaffe K, Sirota M. PMID: 37031271; PMCID: PMC10082816.
View in: PubMed Mentions: 3 - Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study. Res Sq. 2023 Mar 31. Roger J, Xie F, Costello J, Tang A, Liu J, Oskotsky T, Woldemariam S, Kosti I, Le B, Snyder MP, Giudice LC, Torgerson D, Shaw GM, Stevenson DK, Rajkovic A, Glymour MM, Aghaeepour N, Cakmak H, Lathi RB, Sirota M. PMID: 36993325; PMCID: PMC10055527.
View in: PubMed Mentions: - Data-driven longitudinal characterization of neonatal health and morbidity. Sci Transl Med. 2023 02 15; 15(683):eadc9854. De Francesco D, Reiss JD, Roger J, Tang AS, Chang AL, Becker M, Phongpreecha T, Espinosa C, Morin S, Berson E, Thuraiappah M, Le BL, Ravindra NG, Payrovnaziri SN, Mataraso S, Kim Y, Xue L, Rosenstein MG, Oskotsky T, Maric I, Gaudilliere B, Carvalho B, Bateman BT, Angst MS, Prince LS, Blumenfeld YJ, Benitz WE, Fuerch JH, Shaw GM, Sylvester KG, Stevenson DK, Sirota M, Aghaeepour N. PMID: 36791208; PMCID: PMC10197092.
View in: PubMed Mentions: 18 Fields:
Translation:Humans - Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions. Sci Rep. 2022 06 07; 12(1):9396. Andrews SV, Yang IJ, Froehlich K, Oskotsky T, Sirota M. PMID: 35672357; PMCID: PMC9174475.
View in: PubMed Mentions: 14 Fields:
Translation:HumansCells - Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer's Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions. Front Aging Neurosci. 2022; 14:749991. Belonwu SA, Li Y, Bunis DG, Rao AA, Solsberg CW, Oskotsky T, Taubes AL, Grone B, Zalocusky KA, Fragiadakis GK, Huang Y, Sirota M. PMID: 35572130; PMCID: PMC9093608.
View in: PubMed Mentions: 5 - Deep phenotyping of Alzheimer's disease leveraging electronic medical records identifies sex-specific clinical associations. Nat Commun. 2022 02 03; 13(1):675. Tang AS, Oskotsky T, Havaldar S, Mantyh WG, Bicak M, Solsberg CW, Woldemariam S, Zeng B, Hu Z, Oskotsky B, Dubal D, Allen IE, Glicksberg BS, Sirota M. PMID: 35115528; PMCID: PMC8814236.
View in: PubMed Mentions: 20 Fields:
Translation:Humans - Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students. PLoS Comput Biol. 2022 01; 18(1):e1009719. Oskotsky T, Bajaj R, Burchard J, Cavazos T, Chen I, Connell WT, Eaneff S, Grant T, Kanungo I, Lindquist K, Myers-Turnbull D, Naing ZZC, Tang A, Vora B, Wang J, Karim I, Swadling C, Yang J, AI4ALL Student Cohort 2020, Lindstaedt B, Sirota M. PMID: 35100256; PMCID: PMC8830787.
View in: PubMed Mentions: 3 Fields:
Translation:Humans - Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Nat Aging. 2021 Dec; 1(12):1202. Taubes A, Nova P, Zalocusky KA, Kosti I, Bicak M, Zilberter MY, Hao Y, Yoon SY, Oskotsky T, Pineda S, Chen B, Aery Jones EA, Choudhary K, Grone B, Balestra ME, Chaudhry F, Paranjpe I, De Freitas J, Koutsodendris N, Chen N, Wang C, Chang W, An A, Glicksberg BS, Sirota M, Huang Y. PMID: 37117528.
View in: PubMed Mentions: 1 Fields: - Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants. JAMA Netw Open. 2021 11 01; 4(11):e2133090. Oskotsky T, Maric I, Tang A, Oskotsky B, Wong RJ, Aghaeepour N, Sirota M, Stevenson DK. PMID: 34779847; PMCID: PMC8593759.
View in: PubMed Mentions: 76 Fields:
Translation:HumansCells - Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer's Disease Across Two Brain Regions. Mol Neurobiol. 2022 Jan; 59(1):276-293. Belonwu SA, Li Y, Bunis D, Rao AA, Solsberg CW, Tang A, Fragiadakis GK, Dubal DB, Oskotsky T, Sirota M. PMID: 34669146; PMCID: PMC8786804.
View in: PubMed Mentions: 28 Fields:
Translation:HumansCells - Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease. Nat Aging. 2021 10; 1(10):932-947. Taubes A, Nova P, Zalocusky KA, Kosti I, Bicak M, Zilberter MY, Hao Y, Yoon SY, Oskotsky T, Pineda S, Chen B, Jones EAA, Choudhary K, Grone B, Balestra ME, Chaudhry F, Paranjpe I, De Freitas J, Koutsodendris N, Chen N, Wang C, Chang W, An A, Glicksberg BS, Sirota M, Huang Y. PMID: 36172600; PMCID: PMC9514594.
View in: PubMed Mentions: 52 Fields:
Translation:HumansAnimals - Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer's Disease. Front Aging Neurosci. 2021; 13:735611. Paranjpe MD, Belonwu S, Wang JK, Oskotsky T, Gupta A, Taubes A, Zalocusky KA, Paranjpe I, Glicksberg BS, Huang Y, Sirota M. PMID: 34658838; PMCID: PMC8515049.
View in: PubMed Mentions: 29 - Personalizing routine lab tests with machine learning. Nat Med. 2021 09; 27(9):1514-1515. Tang A, Oskotsky T, Sirota M. PMID: 34518677.
View in: PubMed Mentions: 2 Fields: - Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19. Sci Rep. 2021 06 10; 11(1):12310. Le BL, Andreoletti G, Oskotsky T, Vallejo-Gracia A, Rosales R, Yu K, Kosti I, Leon KE, Bunis DG, Li C, Kumar GR, White KM, García-Sastre A, Ott M, Sirota M. PMID: 34112877; PMCID: PMC8192542.
View in: PubMed Mentions: 29 Fields:
Translation:HumansCells - Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis. Front Immunol. 2021; 12:638066. Rychkov D, Neely J, Oskotsky T, Yu S, Perlmutter N, Nititham J, Carvidi A, Krueger M, Gross A, Criswell LA, Ashouri JF, Sirota M. PMID: 34177888; PMCID: PMC8223752.
View in: PubMed Mentions: 16 Fields:
Translation:HumansCells - Drugs in COVID-19 Clinical Trials: Predicting Transporter-Mediated Drug-Drug Interactions Using In Vitro Assays and Real-World Data. Clin Pharmacol Ther. 2021 07; 110(1):108-122. Yee SW, Vora B, Oskotsky T, Zou L, Jakobsen S, Enogieru OJ, Koleske ML, Kosti I, Rödin M, Sirota M, Giacomini KM. PMID: 33759449; PMCID: PMC8217266.
View in: PubMed Mentions: 13 Fields:
Translation:HumansCells - Decreased Mortality Rate Among COVID-19 Patients Prescribed Statins: Data From Electronic Health Records in the US. Front Med (Lausanne). 2021; 8:639804. Maric I, Oskotsky T, Kosti I, Le B, Wong RJ, Shaw GM, Sirota M, Stevenson DK. PMID: 33614688; PMCID: PMC7887302.
View in: PubMed Mentions: 11 - Sex differences in viral entry protein expression and host transcript responses to SARS-CoV-2. Res Sq. 2020 Dec 31. Sun M, Shankar R, Ko M, Chang CD, Yeh SJ, Li S, Liu K, Zhou G, Xing J, VanVelsen A, VanVelsen T, Paithankar S, Feng BY, Young K, Strug M, Turco L, Wang Z, Schadt E, Chen R, Li X, Oskotsky T, Sirota M, Glicksberg BS, Nadkarni GN, Moeser AJ, Li L, Kim S, Zhou J, Chen B. PMID: 33173861; PMCID: PMC7654875.
View in: PubMed Mentions: 1 - Deep posteromedial cortical rhythm in dissociation. Nature. 2020 10; 586(7827):87-94. Vesuna S, Kauvar IV, Richman E, Gore F, Oskotsky T, Sava-Segal C, Luo L, Malenka RC, Henderson JM, Nuyujukian P, Parvizi J, Deisseroth K. PMID: 32939091; PMCID: PMC7553818.
View in: PubMed Mentions: 118 Fields:
Translation:HumansAnimalsCells - Medical students and the electronic health record: 'an epic use of time'. Am J Med. 2014 Sep; 127(9):891-5. Chi J, Kugler J, Chu IM, Loftus PD, Evans KH, Oskotsky T, Basaviah P, Braddock CH. PMID: 24907594.
View in: PubMed Mentions: 17 Fields:
Translation:Humans
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