Vasilis Ntranos • UCSF Profiles (original) (raw)
- ApoE-Dependent Lipid Handling by Median Eminence Microglia Preserves Myelin Integrity and Metabolic Function. bioRxiv. 2026 Feb 19. McGrath ER, Folick A, Morrissette LJ, Brown Mayfield SM, Pham V, Pillutla SN, Choi MK, Cheang RT, Bolus WR, Schwendeman A, Ntranos V, Koliwad SK, Valdearcos M. PMID: 41756835; PMCID: PMC12934649.
View in: PubMed Mentions: - Fezf2 regulates differentiation of Aire-expressing and post-Aire mimetic epithelial populations maintaining thymic homeostasis. bioRxiv. 2026 Jan 01. Germino J, Liu X, Wang Y, Balolong J, Tang V, Sun IH, Nie Y, Tsyporin J, Proekt I, Rattay K, Ntranos V, Anderson MS, Chen B, Gardner JM, Miller CN. PMID: 41509310; PMCID: PMC12776557.
View in: PubMed Mentions: - Leveraging protein language models to identify complex trait associations with previously inaccessible classes of functional rare variants. Cell Genom. 2026 Feb 11; 6(2):101068. Jang SK, Wang Z, Border R, Tuan D, Wei A, An U, Sankararaman S, Ntranos V, Flint J, Zaitlen N. PMID: 41265447; PMCID: PMC12903449.
View in: PubMed Mentions: - Phenotypic pleiotropy of missense variants in human B cell confinement receptor P2RY8. Cell Genom. 2025 Nov 12; 5(11):100981. LaFlam TN, Billesbølle CB, Dinh T, Wolfreys FD, Lu E, Matteson T, An J, Xu Y, Singhal A, Brandes N, Ntranos V, Manglik A, Cyster JG, Ye CJ. PMID: 40930105; PMCID: PMC12648108.
View in: PubMed Mentions: 2 Fields: - Uncovering differential tolerance to deletions versus substitutions with a protein language model. Cell Syst. 2025 Sep 17; 16(9):101373. Goldman G, Chati P, Ntranos V. PMID: 40914157; PMCID: PMC12823221.
View in: PubMed Mentions: Fields:
Translation:Humans - Investigating the sources of variable impact of pathogenic variants in monogenic metabolic conditions. Nat Commun. 2025 Jun 05; 16(1):5223. Wei A, Border R, Fu B, Cullina S, Brandes N, Jang SK, Sankararaman S, Kenny EE, Udler MS, Ntranos V, Zaitlen N, Arboleda VA. PMID: 40473624; PMCID: PMC12141715.
View in: PubMed Mentions: 1 Fields:
Translation:Humans - RORγt eTACs mediate oral tolerance and Treg induction. J Exp Med. 2025 Aug 04; 222(8). Sun IH, Qualls AE, Yin HS, Wang J, Arvedson MP, Germino J, Horner NK, Zhong S, Du J, Valdearcos M, Ntranos V, Locksley RM, Ricardo-Gonzalez RR, Gardner JM. PMID: 40298935; PMCID: PMC12039581.
View in: PubMed Mentions: 2 Fields:
Translation:AnimalsCells - Phenotypic pleiotropy of missense variants in human B cell-confinement receptor P2RY8. bioRxiv. 2025 Mar 06. LaFlam TN, Billesbølle CB, Dinh T, Wolfreys FD, Lu E, Matteson T, An J, Xu Y, Singhal A, Brandes N, Ntranos V, Manglik A, Cyster JG, Ye CJ. PMID: 40093123; PMCID: PMC11908195.
View in: PubMed Mentions: - Method of moments framework for differential expression analysis of single-cell RNA sequencing data. Cell. 2024 Oct 31; 187(22):6393-6410.e16. Kim MC, Gate R, Lee DS, Tolopko A, Lu A, Gordon E, Shifrut E, Garcia-Nieto PE, Marson A, Ntranos V, Ye CJ. PMID: 39454576; PMCID: PMC11556465.
View in: PubMed Mentions: 15 Fields:
Translation:HumansAnimalsCells - nSMase2-mediated exosome secretion shapes the tumor microenvironment to immunologically support pancreatic cancer. bioRxiv. 2024 Sep 25. Hendley AM, Ashe S, Urano A, Ng M, Phu TA, Peng XL, Luan C, Finger AM, Jang GH, Kerper NR, Berrios DI, Jin D, Lee J, Riahi IR, Gbenedio OM, Chung C, Roose JP, Yeh JJ, Gallinger S, Biankin AV, O'Kane GM, Ntranos V, Chang DK, Dawson DW, Kim GE, Weaver VM, Raffai RL, Hebrok M. PMID: 39399775; PMCID: PMC11468832.
View in: PubMed Mentions: - Investigating the sources of variable impact of pathogenic variants in monogenic metabolic conditions. medRxiv. 2024 May 01. Wei A, Border R, Fu B, Cullina S, Brandes N, Jang SK, Sankararaman S, Kenny E, Udler MS, Ntranos V, Zaitlen N, Arboleda V. PMID: 37745486; PMCID: PMC10516069.
View in: PubMed Mentions: - Sox9 regulates alternative splicing and pancreatic beta cell function. Nat Commun. 2024 Jan 18; 15(1):588. Puri S, Maachi H, Nair G, Russ HA, Chen R, Pulimeno P, Cutts Z, Ntranos V, Hebrok M. PMID: 38238288; PMCID: PMC10796970.
View in: PubMed Mentions: 8 Fields:
Translation:HumansAnimalsCells - Ikaros is a principal regulator of Aire+ mTEC homeostasis, thymic mimetic cell diversity, and central tolerance. Sci Immunol. 2023 10 27; 8(88):eabq3109. Sin JH, Sucharov J, Kashyap S, Wang Y, Proekt I, Liu X, Parent AV, Gupta A, Kastner P, Chan S, Gardner JM, Ntranos V, Miller CN, Anderson MS, Schjerven H, Waterfield MR. PMID: 37889983; PMCID: PMC11433069.
View in: PubMed Mentions: 4 Fields:
Translation:HumansAnimals - Genome-wide prediction of disease variant effects with a deep protein language model. Nat Genet. 2023 09; 55(9):1512-1522. Brandes N, Goldman G, Wang CH, Ye CJ, Ntranos V. PMID: 37563329; PMCID: PMC10484790.
View in: PubMed Mentions: 171 Fields:
Translation:Humans - Alpha cell dysfunction in type 1 diabetes is independent of a senescence program. Front Endocrinol (Lausanne). 2022; 13:932516. Brawerman G, Ntranos V, Thompson PJ. PMID: 36277717; PMCID: PMC9586489.
View in: PubMed Mentions: 13 Fields:
Translation:HumansAnimalsCells - Single-cell multiomics defines tolerogenic extrathymic Aire-expressing populations with unique homology to thymic epithelium. Sci Immunol. 2021 Nov 12; 6(65):eabl5053. Wang J, Lareau CA, Bautista JL, Gupta AR, Sandor K, Germino J, Yin Y, Arvedson MP, Reeder GC, Cramer NT, Xie F, Ntranos V, Satpathy AT, Anderson MS, Gardner JM. PMID: 34767455; PMCID: PMC8855935.
View in: PubMed Mentions: 41 Fields:
Translation:Animals - A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. Nature. 2021 10; 598(7879):103-110. Yao Z, Liu H, Xie F, Fischer S, Adkins RS, Aldridge AI, Ament SA, Bartlett A, Behrens MM, Van den Berge K, Bertagnolli D, de Bézieux HR, Biancalani T, Booeshaghi AS, Bravo HC, Casper T, Colantuoni C, Crabtree J, Creasy H, Crichton K, Crow M, Dee N, Dougherty EL, Doyle WI, Dudoit S, Fang R, Felix V, Fong O, Giglio M, Goldy J, Hawrylycz M, Herb BR, Hertzano R, Hou X, Hu Q, Kancherla J, Kroll M, Lathia K, Li YE, Lucero JD, Luo C, Mahurkar A, McMillen D, Nadaf NM, Nery JR, Nguyen TN, Niu SY, Ntranos V, Orvis J, Osteen JK, Pham T, Pinto-Duarte A, Poirion O, Preissl S, Purdom E, Rimorin C, Risso D, Rivkin AC, Smith K, Street K, Sulc J, Svensson V, Tieu M, Torkelson A, Tung H, Vaishnav ED, Vanderburg CR, van Velthoven C, Wang X, White OR, Huang ZJ, Kharchenko PV, Pachter L, Ngai J, Regev A, Tasic B, Welch JD, Gillis J, Macosko EZ, Ren B, Ecker JR, Zeng H, Mukamel EA. PMID: 34616066; PMCID: PMC8494649.
View in: PubMed Mentions: 180 Fields:
Translation:AnimalsCells - View in: PubMed Mentions: 17 Fields:
Translation:AnimalsCells - Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla. Nat Commun. 2021 02 17; 12(1):1096. Bautista JL, Cramer NT, Miller CN, Chavez J, Berrios DI, Byrnes LE, Germino J, Ntranos V, Sneddon JB, Burt TD, Gardner JM, Ye CJ, Anderson MS, Parent AV. PMID: 33597545; PMCID: PMC7889611.
View in: PubMed Mentions: 102 Fields:
Translation:HumansAnimalsCells - Determining sequencing depth in a single-cell RNA-seq experiment. Nat Commun. 2020 02 07; 11(1):774. Zhang MJ, Ntranos V, Tse D. PMID: 32034137; PMCID: PMC7005864.
View in: PubMed Mentions: 64 Fields: - The barcode, UMI, set format and BUStools. Bioinformatics. 2019 11 01; 35(21):4472-4473. Melsted P, Ntranos V, Pachter L. PMID: 31073610.
View in: PubMed Mentions: 75 Fields: - Fumarates target the metabolic-epigenetic interplay of brain-homing T cells in multiple sclerosis. Brain. 2019 03 01; 142(3):647-661. Ntranos A, Ntranos V, Bonnefil V, Liu J, Kim-Schulze S, He Y, Zhu Y, Brandstadter R, Watson CT, Sharp AJ, Katz Sand I, Casaccia P. PMID: 30698680; PMCID: PMC6821213.
View in: PubMed Mentions: 9 Fields:
Translation:HumansCells - Targeted Elimination of Senescent Beta Cells Prevents Type 1 Diabetes. Cell Metab. 2019 05 07; 29(5):1045-1060.e10. Thompson PJ, Shah A, Ntranos V, Van Gool F, Atkinson M, Bhushan A. PMID: 30799288.
View in: PubMed Mentions: 187 Fields:
Translation:HumansAnimalsCells - Deterministic column subset selection for single-cell RNA-Seq. PLoS One. 2019; 14(1):e0210571. McCurdy SR, Ntranos V, Pachter L. PMID: 30682053; PMCID: PMC6347249.
View in: PubMed Mentions: 2 Fields: - A discriminative learning approach to differential expression analysis for single-cell RNA-seq. Nat Methods. 2019 02; 16(2):163-166. Ntranos V, Yi L, Melsted P, Pachter L. PMID: 30664774.
View in: PubMed Mentions: 90 Fields:
Translation:HumansCells - Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts. Genome Biol. 2016 05 26; 17(1):112. Ntranos V, Kamath GM, Zhang JM, Pachter L, Tse DN. PMID: 27230763; PMCID: PMC4881296.
View in: PubMed Mentions: 59 Fields:
Translation:HumansAnimalsCells
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
Start with: newest oldestInclude: line numbers double spacing all authors publication IDs