Large-scale sequencing of plant genomes - PubMed (original) (raw)
Comparative Study
Large-scale sequencing of plant genomes
S Rounsley et al. Curr Opin Plant Biol. 1998 Apr.
Abstract
The large number of ESTs generated for Arabidopsis and rice in recent years now act as an important complement to whole genome sequencing projects. The Arabidopsis Genome Initiative has begun a coordinated effort to sequence the entire genome and, as a result, increasing numbers of large sequence entries can be found in the public databases. In addition, the mitochondrial genome of Arabidopsis has been completely sequenced. Genome sequencing studies and the public sequence databases have begun to influence the direction of diverse areas of research from physiology to evolution.
Similar articles
- [Plant genome sequencing: a prelude to the study of its expression].
Delseny M. Delseny M. J Soc Biol. 2002;196(4):297-301. J Soc Biol. 2002. PMID: 12645299 Review. French. - Comparative analysis of the Arabidopsis and rice expressed sequence tag (EST) sets.
Ewing R, Poirot O, Claverie JM. Ewing R, et al. In Silico Biol. 1999-2000;1(4):197-213. In Silico Biol. 1999. PMID: 11479934 - The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification.
Rounsley SD, Glodek A, Sutton G, Adams MD, Somerville CR, Venter JC, Kerlavage AR. Rounsley SD, et al. Plant Physiol. 1996 Nov;112(3):1177-83. doi: 10.1104/pp.112.3.1177. Plant Physiol. 1996. PMID: 8938416 Free PMC article. - Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.
Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J. Pavy N, et al. BMC Genomics. 2005 Oct 19;6:144. doi: 10.1186/1471-2164-6-144. BMC Genomics. 2005. PMID: 16236172 Free PMC article. - How can we deliver the large plant genomes? Strategies and perspectives.
Mayer K, Mewes HW. Mayer K, et al. Curr Opin Plant Biol. 2002 Apr;5(2):173-7. doi: 10.1016/s1369-5266(02)00235-2. Curr Opin Plant Biol. 2002. PMID: 11856615 Review.
Cited by
- Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.
Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C. Dantec LL, et al. Plant Mol Biol. 2004 Feb;54(3):461-70. doi: 10.1023/B:PLAN.0000036376.11710.6f. Plant Mol Biol. 2004. PMID: 15284499 - Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK Jr, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O. Haas BJ, et al. Nucleic Acids Res. 2003 Oct 1;31(19):5654-66. doi: 10.1093/nar/gkg770. Nucleic Acids Res. 2003. PMID: 14500829 Free PMC article. - Cost-effective high-throughput single-haplotype iterative mapping and sequencing for complex genomic structures.
Bellott DW, Cho TJ, Hughes JF, Skaletsky H, Page DC. Bellott DW, et al. Nat Protoc. 2018 Apr;13(4):787-809. doi: 10.1038/nprot.2018.019. Epub 2018 Mar 22. Nat Protoc. 2018. PMID: 29565902 Free PMC article. - Rapid EST isolation from chromosome 1R of rye.
Zhou RN, Shi R, Jiang SM, Yin WB, Wang HH, Chen YH, Hu J, Wang RR, Zhang XQ, Hu ZM. Zhou RN, et al. BMC Plant Biol. 2008 Mar 18;8:28. doi: 10.1186/1471-2229-8-28. BMC Plant Biol. 2008. PMID: 18366673 Free PMC article. - High gene density is conserved at syntenic loci of small and large grass genomes.
Feuillet C, Keller B. Feuillet C, et al. Proc Natl Acad Sci U S A. 1999 Jul 6;96(14):8265-70. doi: 10.1073/pnas.96.14.8265. Proc Natl Acad Sci U S A. 1999. PMID: 10393983 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources