Purification and catalytic properties of human caspase family members - PubMed (original) (raw)
Purification and catalytic properties of human caspase family members
M Garcia-Calvo et al. Cell Death Differ. 1999 Apr.
Abstract
Members of the caspase family of cysteine proteases are known to be key mediators of mammalian inflammation and apoptosis. To better understand the catalytic properties of these enzymes, and to facilitate the identification of selective inhibitors, we have systematically purified and biochemically characterized ten homologues of human origin (caspases 1 - 10). The method used for production of most of these enzymes involves folding of active enzymes from their constituent subunits which are expressed separately in E. coli, followed by ion exchange chromatography. In cases where it was not possible to use this method (caspase-6 and -10), the enzymes were instead expressed as soluble proteins in E. coli, and partially purified by ion exchange chromatography. Based on the optimal tetrapeptide recognition motif for each enzyme, substrates with the general structure Ac-XEXD-AMC were used to develop continuous fluorometric assays. In some cases, enzymes with virtually identical tetrapeptide specificities have kcat/Km values for fluorogenic substrates that differ by more than 1000-fold. Using these assays, we have investigated the effects of a variety of environmental factors (e.g. pH, NaCl, Ca2+) on the activities of these enzymes. Some of these variables have a profound effect on the rate of catalysis, a finding that may have important biological implications.
Similar articles
- Malonate-assisted purification of human caspases.
Scheer JM, Wells JA, Romanowski MJ. Scheer JM, et al. Protein Expr Purif. 2005 May;41(1):148-53. doi: 10.1016/j.pep.2005.01.008. Protein Expr Purif. 2005. PMID: 15802232 - Synthesis, enzymatic evaluation, and docking studies of fluorogenic caspase 8 tetrapeptide substrates.
Reszka P, Schulz R, Methling K, Lalk M, Bednarski PJ. Reszka P, et al. ChemMedChem. 2010 Jan;5(1):103-17. doi: 10.1002/cmdc.200900356. ChemMedChem. 2010. PMID: 19918833 - Identification of early intermediates of caspase activation using selective inhibitors and activity-based probes.
Berger AB, Witte MD, Denault JB, Sadaghiani AM, Sexton KM, Salvesen GS, Bogyo M. Berger AB, et al. Mol Cell. 2006 Aug;23(4):509-21. doi: 10.1016/j.molcel.2006.06.021. Mol Cell. 2006. PMID: 16916639 - Caspase activation without death.
Zeuner A, Eramo A, Peschle C, De Maria R. Zeuner A, et al. Cell Death Differ. 1999 Nov;6(11):1075-80. doi: 10.1038/sj.cdd.4400596. Cell Death Differ. 1999. PMID: 10578176 Review. - Caspases as regulators of apoptosis and other cell functions.
Philchenkov AA. Philchenkov AA. Biochemistry (Mosc). 2003 Apr;68(4):365-76. doi: 10.1023/a:1023635510363. Biochemistry (Mosc). 2003. PMID: 12765517 Review.
Cited by
- Structure and function of the human apoptotic scramblase Xkr4.
Chakraborty S, Feng Z, Lee S, Alvarenga OE, Panda A, Bruni R, Khelashvili G, Gupta K, Accardi A. Chakraborty S, et al. bioRxiv [Preprint]. 2024 Aug 9:2024.08.07.607004. doi: 10.1101/2024.08.07.607004. bioRxiv. 2024. PMID: 39149361 Free PMC article. Preprint. - Caspases in Alzheimer's Disease: Mechanism of Activation, Role, and Potential Treatment.
Wójcik P, Jastrzębski MK, Zięba A, Matosiuk D, Kaczor AA. Wójcik P, et al. Mol Neurobiol. 2024 Jul;61(7):4834-4853. doi: 10.1007/s12035-023-03847-1. Epub 2023 Dec 23. Mol Neurobiol. 2024. PMID: 38135855 Free PMC article. Review. - Caspase-mediated LPS sensing and pyroptosis signaling in Hydra.
Chen S, Li S, Chen H, Gong Y, Yang D, Zhang Y, Liu Q. Chen S, et al. Sci Adv. 2023 Jul 21;9(29):eadh4054. doi: 10.1126/sciadv.adh4054. Epub 2023 Jul 21. Sci Adv. 2023. PMID: 37478191 Free PMC article. - Peptidyl-Resin Substrates as a Tool in the Analysis of Caspase Activity.
Bąchor R. Bąchor R. Molecules. 2022 Jun 26;27(13):4107. doi: 10.3390/molecules27134107. Molecules. 2022. PMID: 35807352 Free PMC article. - Exogenous Introduction of Initiator and Executioner Caspases Results in Different Apoptotic Outcomes.
Anson F, Thayumanavan S, Hardy JA. Anson F, et al. JACS Au. 2021 Jul 8;1(8):1240-1256. doi: 10.1021/jacsau.1c00261. eCollection 2021 Aug 23. JACS Au. 2021. PMID: 34467362 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous