Database resources of the National Center for Biotechnology Information - PubMed (original) (raw)

Database resources of the National Center for Biotechnology Information

D L Wheeler et al. Nucleic Acids Res. 2001.

Abstract

In addition to maintaining the GenBank nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides data analysis and retrieval resources that operate on the data in GenBank and a variety of other biological data made available through NCBI's Web site. NCBI data retrieval resources include Entrez, PubMed, LocusLink and the Taxonomy Browser. Data analysis resources include BLAST, Electronic PCR, OrfFinder, RefSeq, UniGene, HomoloGene, Database of Single Nucleotide Polymorphisms (dbSNP), Human Genome Sequencing, Human MapViewer, GeneMap'99, Human-Mouse Homology Map, Cancer Chromosome Aberration Project (CCAP), Entrez Genomes, Clusters of Orthologous Groups (COGs) database, Retroviral Genotyping Tools, Cancer Genome Anatomy Project (CGAP), SAGEmap, Gene Expression Omnibus (GEO), Online Mendelian Inheri-tance in Man (OMIM), the Molecular Modeling Database (MMDB) and the Conserved Domain Database (CDD). Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. All of the resources can be accessed through the NCBI home page at: http://www.ncbi.nlm.nih. gov.

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References

1. 1. Benson D.A., Karsch-Mizrachi,I., Lipman,D.J., Ostell,J., Rapp,B.A. and Wheeler,D.L. (2000) GenBank. Nucleic Acids Res., 28, 15–18. - PMC - PubMed
2. 1. Schuler G.D., Epstein,J.A., Ohkawa,H. and Kans,J.A. (1996) Entrez: molecular biology database and retrieval system. Methods Enzymol ., 266, 141–162. - PubMed
3. 1. Wang Y., Addess,K.J., Geer,L., Madej,T., Marchler-Bauer,A., Zimmerman,D. and Bryant,S.H. (2000) MMDB: 3D structure data in Entrez. Nucleic Acids Res., 28, 243–245. - PMC - PubMed
4. 1. Barker W.C., Garavelli,J.S., Huong,H., McGarvey,P.B., Orcutt,B.C., Srinivarsarao,G.Y., Xiao,C., Yeh,L.S., Ledley,R.S., Janda,J., Pfeiffer,F., Mewes,H.W., Tsugita,A. and Wu,K. (2000) The Protein Information Resource (PIR). Nucleic Acids Res., 28, 41–44. Updated article in this issue: Nucleic Acids Res. (2001), 29, 29–32. - PMC - PubMed
5. 1. Kriventseva, E.V., Fleischmann,W, Zdobnov,E.M. and Apweiler,R. (2001) CluSTr: a database of Clusters of SWISS-PROT and TrEMBL proteins. Nucleic Acids Res., 29, 33–36. - PMC - PubMed

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