Fluorescent RNA cytochemistry: tracking gene transcripts in living cells - PubMed (original) (raw)
Review
Fluorescent RNA cytochemistry: tracking gene transcripts in living cells
T Pederson. Nucleic Acids Res. 2001.
Abstract
The advent of jellyfish green fluorescent protein and its spectral variants, together with promising new fluorescent proteins from other classes of the Cnidarian phylum (coral and anemones), has greatly enhanced and promises to further boost the detection and localization of proteins in cell biology. It has been less widely appreciated that highly sensitive methods have also recently been developed for detecting the movement and localization in living cells of the very molecules that precede proteins in the gene expression pathway, i.e. RNAs. These approaches include the microinjection of fluorescent RNAs into living cells, the in vivo hybridization of fluorescent oligonucleotides to endogenous RNAs and the expression in cells of fluorescent RNA-binding proteins. This new field of 'fluorescent RNA cytochemistry' is summarized in this article, with emphasis on the biological insights it has already provided. These new techniques are likely to soon collaborate with other emerging approaches to advance the investigation of RNA birth, RNA-protein assembly and ribonucleoprotein particle transport in systems such as oocytes, embryos, neurons and other somatic cells, and may even permit the observation of viral replication and transcription pathways as they proceed in living cells, ushering in a new era of nucleic acids research in vivo.
Similar articles
- The molecular cytology of gene expression: fluorescent RNA as both a stain and tracer in vivo.
Pederson T. Pederson T. Eur J Histochem. 2004;48(1):57-64. Eur J Histochem. 2004. PMID: 15145776 Review. - Movement and localization of RNA in the cell nucleus.
Pederson T. Pederson T. FASEB J. 1999 Dec;13 Suppl 2:S238-42. doi: 10.1096/fasebj.13.9002.s238. FASEB J. 1999. PMID: 10619135 Review. - Visualizing nucleic acids in living cells by fluorescence in vivo hybridization.
Wiegant J, Brouwer AK, Tanke HJ, Dirks RW. Wiegant J, et al. Methods Mol Biol. 2010;659:239-46. doi: 10.1007/978-1-60761-789-1_17. Methods Mol Biol. 2010. PMID: 20809316 - Advances in fluorescent tracking of nucleic acids in living cells.
Dirks RW, Tanke HJ. Dirks RW, et al. Biotechniques. 2006 Apr;40(4):489-96. doi: 10.2144/000112121. Biotechniques. 2006. PMID: 16629396 Review. - Techniques for following the movement of single RNAs in living cells.
Urbinati CR, Long RM. Urbinati CR, et al. Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):601-9. doi: 10.1002/wrna.83. Epub 2011 Mar 16. Wiley Interdiscip Rev RNA. 2011. PMID: 21957047 Review.
Cited by
- Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis.
Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, Herschlag D, DeRisi JL, Vale RD. Shepard KA, et al. Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11429-34. doi: 10.1073/pnas.2033246100. Epub 2003 Sep 17. Proc Natl Acad Sci U S A. 2003. PMID: 13679573 Free PMC article. - Incorporation of the fluorescent ribonucleotide analogue tCTP by T7 RNA polymerase.
Stengel G, Urban M, Purse BW, Kuchta RD. Stengel G, et al. Anal Chem. 2010 Feb 1;82(3):1082-9. doi: 10.1021/ac902456n. Anal Chem. 2010. PMID: 20067253 Free PMC article. - The nucleolus.
Pederson T. Pederson T. Cold Spring Harb Perspect Biol. 2011 Mar 1;3(3):a000638. doi: 10.1101/cshperspect.a000638. Cold Spring Harb Perspect Biol. 2011. PMID: 21106648 Free PMC article. Review. - Single mRNA tracking in live cells.
Park HY, Buxbaum AR, Singer RH. Park HY, et al. Methods Enzymol. 2010;472:387-406. doi: 10.1016/S0076-6879(10)72003-6. Methods Enzymol. 2010. PMID: 20580973 Free PMC article. - Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells.
Molenaar C, Marras SA, Slats JC, Truffert JC, Lemaître M, Raap AK, Dirks RW, Tanke HJ. Molenaar C, et al. Nucleic Acids Res. 2001 Sep 1;29(17):E89-9. doi: 10.1093/nar/29.17.e89. Nucleic Acids Res. 2001. PMID: 11522845 Free PMC article.
References
- Bernard C. (1859) Leçon sur les Propriétés Physiologiques et les Altérations Pathologiques des Liquides de l’Organisme. Ballière, Paris. Vol. 2.
- Pliny, The Elder (77) Historia naturalis, 34:112. In Rackhorn,H., Jones,W.H.S. and Eichholz,D.E. (trans.), Harvard University Loeb Classical Library, Vol. IX:211, Harvard University Press, Cambridge, MA, 1956–1966.
- Majno G. (1975) The Healing Hand. Man and Wound in the Ancient World. Harvard University Press, Cambridge, MA, p. 345.
- Brachet J. (1957) Biochemical Cytology. Academic Press, New York, NY.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources